General information for g8602.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Band 3 anion transport protein.
Parent gene
- The parent gene g8602 is located on chr_2: 31710822..31711792 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8602 | g8602.t3 | isoform | g8602.t3 | 31699853 | 31702724 |
| chr_2 | g8602 | g8602.t3 | exon | g8602.t3.exon1 | 31699853 | 31700597 |
| chr_2 | g8602 | g8602.t3 | TTS | g8602.t3 | 31699857 | 31699857 |
| chr_2 | g8602 | g8602.t3 | cds | g8602.t3.CDS1 | 31700523 | 31700597 |
| chr_2 | g8602 | g8602.t3 | exon | g8602.t3.exon2 | 31700652 | 31700880 |
| chr_2 | g8602 | g8602.t3 | cds | g8602.t3.CDS2 | 31700652 | 31700880 |
| chr_2 | g8602 | g8602.t3 | exon | g8602.t3.exon3 | 31701069 | 31701263 |
| chr_2 | g8602 | g8602.t3 | cds | g8602.t3.CDS3 | 31701069 | 31701263 |
| chr_2 | g8602 | g8602.t3 | exon | g8602.t3.exon4 | 31701321 | 31701457 |
| chr_2 | g8602 | g8602.t3 | cds | g8602.t3.CDS4 | 31701321 | 31701457 |
| chr_2 | g8602 | g8602.t3 | exon | g8602.t3.exon5 | 31701523 | 31701702 |
| chr_2 | g8602 | g8602.t3 | cds | g8602.t3.CDS5 | 31701523 | 31701702 |
| chr_2 | g8602 | g8602.t3 | exon | g8602.t3.exon6 | 31701763 | 31701836 |
| chr_2 | g8602 | g8602.t3 | cds | g8602.t3.CDS6 | 31701763 | 31701836 |
| chr_2 | g8602 | g8602.t3 | exon | g8602.t3.exon7 | 31701906 | 31702019 |
| chr_2 | g8602 | g8602.t3 | cds | g8602.t3.CDS7 | 31701906 | 31702019 |
| chr_2 | g8602 | g8602.t3 | exon | g8602.t3.exon8 | 31702107 | 31702724 |
| chr_2 | g8602 | g8602.t3 | cds | g8602.t3.CDS8 | 31702107 | 31702638 |
| chr_2 | g8602 | g8602.t3 | TSS | g8602.t3 | NA | NA |
Sequences
>g8602.t3 Gene=g8602 Length=2292
CCATCACATTTGGTGCATTGATTGGAAGCAAAACAAAAAATTTAATTGGAATTTCTGAGA
CTTTAATTTCTGCTTGTTTTGTTGGAATGATTTTCCATGCATTTGCATCACAACCTTTGG
TATTTGTTGGCACAACTGGTCCATTGATTCTCTTTGATGATGCTTTAATGCAATTTTGTG
ATTCGATTGGTTATAGCTTCCTCACAATTCGAGTTTATGTTGGTTGTTGGCTATCAATTA
TTGCCTTAACAATGGCTGCATTTGAAGGAAGTGTTTATGTGCGACTTTTTACGAGATTTA
CACAAGAAATTTTCTCTGCATTGATCACATTAATTTATCTTGTTGAAACCGCATTAAAAC
TTGTCAGTACATTCAAGCGACATCCATTGCATGCTGAATATGTTTATAAAAATATAACAG
AAGATATTGCAGTAGCAACAACAATGGGAGCAATTCCACATGGACTTGATAGTGAAAATG
AATTAGAATCAAAACTTGAAAACATTCAGACAACTGTTGCATCAGTTGTAAGCACTGCAT
TGGGAAATGTGACAAGTGAAAATTCAAATTTATTAATTCCATATGACAAAGATGGACCAT
TGAATCAACCAAATACTGCACTTTTCTGTTTGGTCCTCACATTGGGAACATTCACATCAG
CTTACAGTCTTAAAATCTTCCGCAATTCAAAATTCTTAGGACGAAATGCTCGTCGTGCTT
TGGGTGATTTTGGTGTGCCAATTTCAATTGCAATTTTTGTCACTATAACTTTGTTCGTTC
CTCAAGTTTTTACTGATAAATTAGCTGTACCCGATGGAATTTCACCAAGTGATCCAGATA
ATCGTGGCTGGATAATTCCATTAGGACCAGTTGAAGCTTGGATTCCTTTTGTTTGCCTCA
TTCCTGCATTACTTGTTTATATTTTGGTCTTTATGGAAACACAAATTTCTGAGTTAATTG
TTGGAAAGCCAGAACGTGGATTGAAGAAAGGAAATGGACTTCATTGGGATATTGTTCTTT
TATGCTTCTGTAATACAGTTTGTGGATTCTTTGGACTTCCATGGCATTGTGCTGCAACTG
TTCGTTCTGTGACCCACATTTCAGCTGTCACTATCATGTCAACAAATCATGCTCCAGGAG
ATTCACCAAAAATTGCTGATATTAAAGAACAAAGATTGTCAGGATTCTTTGTGTCTCTTA
TGATTGGATTGTCAATTTTCGCAGCACCACTGCTCAAAAAGATTCCAATGTCAGTTCTTT
TTGGTGTCTTCTTGTATATGGGAATTTGTTCAATGATTGGTGTACAGTTCTTTGAAAGAT
TAAGACTATTCTTTATGCCGGTCAAACATCATACACAAGAACCATATGTACGACGACTTC
CAACATGGAAAATGCATTTATTCACAACAGTTCAAGTGTTGGCTCTTGCACTTTTATGGG
GTGTAAAATCTTCGAAATTTTCACTAGCATTTCCATTTATTCTTATGTTGATGGTTCCAA
TTCGTCAGCAACTTGAGAAATTCTACACACCGATTGAACTTAGAGCGATTGATGGAACTC
AAACAACAAATGACACTGAAGATGAACCCGACTTTTATGAACAAGCTCCGCTCCCTGCGT
AAAAAAATTTCATCTCGAACATATTTAAAGTATACTTATTAAAAAAAATATGAAATCGAT
GGTGTCTATAGAAGAAATTTTTCTAGAAAAGCAACTTTATTGCCTAAAAATGTAATTATA
TCAGTACAATAGTGAAGTTTTTGTAAATAGTAAAAAATGACGATAATTACAAAATGAGAA
TTCTAATTGTTTTTCTTTAATTATTTTGACAATTGCAATTTAGAGAAATATAAATTGAGT
TATAAGAAATGAAAAAATTTTATTCAAAAATTTACTGAGATGACAAAAGTTTCAATTACA
TCGTCGCGGAAACTTCTGAGATGACTAAAATAATTTAATTTCTTATAACTTGATTAAAAA
ATAGCAATATAATAGAAAAAGTTAAGTAAGTAAAAAATCCTCGGCATAAAACTTAAAAAA
GAAATTGATTGAAATTCCCCAATAATATTTGTTAAATACTTAAGAACTTCTTGCATATCT
AAGATCGAAAACTTTGCAATTAAAATTTAAATTGTTAGAGAAACTTTGAAGCTTTAAAAA
TGATAAAAAAGAGAACAAAATTGATAGAGAAAAAATCGAAAATTTTATGAGAAAAAAAAC
TGTTATCAATTTTAAAATGATTCAAAAAATTCTAATAAAATTCTATTTTATTTATTAATA
ATAATAAGGAAA
>g8602.t3 Gene=g8602 Length=511
MIFHAFASQPLVFVGTTGPLILFDDALMQFCDSIGYSFLTIRVYVGCWLSIIALTMAAFE
GSVYVRLFTRFTQEIFSALITLIYLVETALKLVSTFKRHPLHAEYVYKNITEDIAVATTM
GAIPHGLDSENELESKLENIQTTVASVVSTALGNVTSENSNLLIPYDKDGPLNQPNTALF
CLVLTLGTFTSAYSLKIFRNSKFLGRNARRALGDFGVPISIAIFVTITLFVPQVFTDKLA
VPDGISPSDPDNRGWIIPLGPVEAWIPFVCLIPALLVYILVFMETQISELIVGKPERGLK
KGNGLHWDIVLLCFCNTVCGFFGLPWHCAATVRSVTHISAVTIMSTNHAPGDSPKIADIK
EQRLSGFFVSLMIGLSIFAAPLLKKIPMSVLFGVFLYMGICSMIGVQFFERLRLFFMPVK
HHTQEPYVRRLPTWKMHLFTTVQVLALALLWGVKSSKFSLAFPFILMLMVPIRQQLEKFY
TPIELRAIDGTQTTNDTEDEPDFYEQAPLPA
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g8602.t3 | PANTHER | PTHR11453:SF47 | ANION EXCHANGE PROTEIN | 1 | 500 | 8.7E-206 |
| 3 | g8602.t3 | PANTHER | PTHR11453 | ANION EXCHANGE PROTEIN | 1 | 500 | 8.7E-206 |
| 4 | g8602.t3 | PRINTS | PR01231 | HCO3- transporter superfamily signature | 62 | 74 | 3.8E-16 |
| 5 | g8602.t3 | PRINTS | PR01231 | HCO3- transporter superfamily signature | 83 | 95 | 3.8E-16 |
| 8 | g8602.t3 | PRINTS | PR01231 | HCO3- transporter superfamily signature | 214 | 223 | 3.8E-16 |
| 7 | g8602.t3 | PRINTS | PR01231 | HCO3- transporter superfamily signature | 279 | 288 | 3.8E-16 |
| 6 | g8602.t3 | PRINTS | PR01231 | HCO3- transporter superfamily signature | 293 | 306 | 3.8E-16 |
| 1 | g8602.t3 | Pfam | PF00955 | HCO3- transporter family | 1 | 442 | 3.5E-151 |
| 26 | g8602.t3 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 42 | - |
| 37 | g8602.t3 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 43 | 63 | - |
| 18 | g8602.t3 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 64 | 74 | - |
| 33 | g8602.t3 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 75 | 93 | - |
| 25 | g8602.t3 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 94 | 176 | - |
| 32 | g8602.t3 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 177 | 195 | - |
| 19 | g8602.t3 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 196 | 214 | - |
| 35 | g8602.t3 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 215 | 235 | - |
| 24 | g8602.t3 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 236 | 254 | - |
| 36 | g8602.t3 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 255 | 283 | - |
| 22 | g8602.t3 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 284 | 303 | - |
| 30 | g8602.t3 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 304 | 324 | - |
| 28 | g8602.t3 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 325 | 363 | - |
| 34 | g8602.t3 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 364 | 383 | - |
| 21 | g8602.t3 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 384 | 389 | - |
| 38 | g8602.t3 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 390 | 409 | - |
| 23 | g8602.t3 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 410 | 435 | - |
| 31 | g8602.t3 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 436 | 453 | - |
| 20 | g8602.t3 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 454 | 459 | - |
| 29 | g8602.t3 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 460 | 476 | - |
| 27 | g8602.t3 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 477 | 511 | - |
| 14 | g8602.t3 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 2 | 24 | - |
| 10 | g8602.t3 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 39 | 61 | - |
| 11 | g8602.t3 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 74 | 96 | - |
| 15 | g8602.t3 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 176 | 198 | - |
| 16 | g8602.t3 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 211 | 233 | - |
| 9 | g8602.t3 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 264 | 283 | - |
| 12 | g8602.t3 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 304 | 326 | - |
| 13 | g8602.t3 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 364 | 383 | - |
| 17 | g8602.t3 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 390 | 409 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016020 | membrane | CC |
| GO:0006820 | anion transport | BP |
| GO:0005452 | inorganic anion exchanger activity | MF |
| GO:0016021 | integral component of membrane | CC |
KEGG
Orthology
- This transcript has been annotated with K24194 (boron transporter)
Pathway
This gene does not belong to any pathways.
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
