General information for g8602.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Anion exchange protein 2.
Parent gene
- The parent gene g8602 is located on chr_2: 31710822..31711792 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8602 | g8602.t4 | isoform | g8602.t4 | 31703188 | 31706824 |
| chr_2 | g8602 | g8602.t4 | exon | g8602.t4.exon1 | 31703188 | 31703522 |
| chr_2 | g8602 | g8602.t4 | cds | g8602.t4.CDS1 | 31703190 | 31703522 |
| chr_2 | g8602 | g8602.t4 | exon | g8602.t4.exon2 | 31703583 | 31703804 |
| chr_2 | g8602 | g8602.t4 | cds | g8602.t4.CDS2 | 31703583 | 31703804 |
| chr_2 | g8602 | g8602.t4 | exon | g8602.t4.exon3 | 31705824 | 31705970 |
| chr_2 | g8602 | g8602.t4 | cds | g8602.t4.CDS3 | 31705824 | 31705970 |
| chr_2 | g8602 | g8602.t4 | exon | g8602.t4.exon4 | 31706114 | 31706244 |
| chr_2 | g8602 | g8602.t4 | cds | g8602.t4.CDS4 | 31706114 | 31706244 |
| chr_2 | g8602 | g8602.t4 | exon | g8602.t4.exon5 | 31706442 | 31706824 |
| chr_2 | g8602 | g8602.t4 | cds | g8602.t4.CDS5 | 31706442 | 31706667 |
| chr_2 | g8602 | g8602.t4 | TSS | g8602.t4 | NA | NA |
| chr_2 | g8602 | g8602.t4 | TTS | g8602.t4 | NA | NA |
Sequences
>g8602.t4 Gene=g8602 Length=1218
ACGACAATATCATTATAAAACTCGAAAATATTCATTACAAGAATATCAACCAGATGGTAA
TGGTGGAAGAAGAGTTTCAGTACAGCCAGAAGATGCAACATTAGAAGAACAAGATTTGGA
TACACTCACATCACATCGTTCAGAAGATCCAAAAGGCATGAGACGATTTAAAGTTCAACC
AGCGAATATTCAAAAGAAAGAAGGCGAACAATATTTGCAAAATATTATGGCAGCAAGTCG
AAAGCAACAATTTGACCACAGTCCACATGAAGTTTTTGTGCAACTTGATGAATTGCATGG
AATGGGTGAAGATCGTGAATGGAAAGAAACTGCTCGTTGGATCAAATATGAAGAAGATGT
TATGGAAGGCTCTGATCGATGGGGCAAACCACACGTTGCATCACTTTCGTTCCATTCTTT
GCTTAATTTGAGAAGATGCCTTGAAACTGGTGTTGTTCTTATGGATTTGGAAGAGAAGGA
TCTTCCTGGAGTTGCTTATCGTGTTGTTGAACAGATGGTAATAGAAGATTTGATTCATCC
TGATGACAAAGCATCAATTATGCGAGCACTCCTCCTTCGTCATCGACATGTTAATGACCA
CACTTATGGTGCTTTTCATTTTGGTTCGAAAAGAAAATATAGCAGCTATAGCAGTCTACA
GAATGTCAGTGAGGAAAGAAAGCGAAGTTTCTTTGGTAGTAGTGATGCCAATGGTAGTAA
TTTACCTAGAAATGGAAGTGCAGCTGACACAACAAAAACTGAAACAAAAATTGAAATGAA
GGAAGAAACAACCTACACGGCATCCCAAGAGGATCTTAAAAAATTGGAAAAAGATACAAT
TTTAAAAAGAATTCCTGCTAATGCTGAAGCTACGACAGTTTTGGTTGGTGCAGTTGATTT
TCTACAACAACCAACAATTGCCTTTGTTCGTTTAGCTGAAGGAATCATCATGCCAACAAT
CACAGAAGTTCCGATTCCAGTTCGTTTCCTTTTCATATTACTTGGACCTAAAACAGCTGG
CTTAGATTATCATGAAATTGGTCGATCAATTGCCACACTTATGTCAAATAGACATTTTCA
CGGTATTGCATATAAAGCTGATGATAGACGAGAACTTTTGTCAGCTATTAATGAATTTTT
GGATGATTCAATTGTCTTGCCGCCTGGTAAATGGGACAAAGAACATTTACTTCCATTTGA
AGAATTGAAAGCTAAAAA
>g8602.t4 Gene=g8602 Length=353
MRRFKVQPANIQKKEGEQYLQNIMAASRKQQFDHSPHEVFVQLDELHGMGEDREWKETAR
WIKYEEDVMEGSDRWGKPHVASLSFHSLLNLRRCLETGVVLMDLEEKDLPGVAYRVVEQM
VIEDLIHPDDKASIMRALLLRHRHVNDHTYGAFHFGSKRKYSSYSSLQNVSEERKRSFFG
SSDANGSNLPRNGSAADTTKTETKIEMKEETTYTASQEDLKKLEKDTILKRIPANAEATT
VLVGAVDFLQQPTIAFVRLAEGIIMPTITEVPIPVRFLFILLGPKTAGLDYHEIGRSIAT
LMSNRHFHGIAYKADDRRELLSAINEFLDDSIVLPPGKWDKEHLLPFEELKAK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g8602.t4 | Gene3D | G3DSA:3.40.930.10 | - | 33 | 353 | 8.6E-114 |
| 5 | g8602.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 179 | 199 | - |
| 2 | g8602.t4 | PANTHER | PTHR11453:SF47 | ANION EXCHANGE PROTEIN | 28 | 351 | 2.8E-118 |
| 3 | g8602.t4 | PANTHER | PTHR11453 | ANION EXCHANGE PROTEIN | 28 | 351 | 2.8E-118 |
| 1 | g8602.t4 | Pfam | PF07565 | Band 3 cytoplasmic domain | 67 | 341 | 1.7E-114 |
| 4 | g8602.t4 | SUPERFAMILY | SSF55804 | Phoshotransferase/anion transport protein | 38 | 345 | 2.62E-90 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016020 | membrane | CC |
| GO:0006820 | anion transport | BP |
| GO:0005452 | inorganic anion exchanger activity | MF |
| GO:0016021 | integral component of membrane | CC |
| GO:0008509 | anion transmembrane transporter activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
