General information for g8615.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Protein still life, isoforms C/SIF type 2.
Parent gene
- The parent gene g8615 is located on chr_2: 31808260..31839132 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8615 | g8615.t1 | isoform | g8615.t1 | 31796377 | 31839132 |
| chr_2 | g8615 | g8615.t1 | exon | g8615.t1.exon1 | 31796377 | 31796439 |
| chr_2 | g8615 | g8615.t1 | cds | g8615.t1.CDS1 | 31796377 | 31796439 |
| chr_2 | g8615 | g8615.t1 | exon | g8615.t1.exon2 | 31801895 | 31801988 |
| chr_2 | g8615 | g8615.t1 | cds | g8615.t1.CDS2 | 31801895 | 31801988 |
| chr_2 | g8615 | g8615.t1 | exon | g8615.t1.exon3 | 31802685 | 31802820 |
| chr_2 | g8615 | g8615.t1 | cds | g8615.t1.CDS3 | 31802685 | 31802820 |
| chr_2 | g8615 | g8615.t1 | exon | g8615.t1.exon4 | 31805042 | 31805226 |
| chr_2 | g8615 | g8615.t1 | cds | g8615.t1.CDS4 | 31805042 | 31805226 |
| chr_2 | g8615 | g8615.t1 | exon | g8615.t1.exon5 | 31805288 | 31805406 |
| chr_2 | g8615 | g8615.t1 | cds | g8615.t1.CDS5 | 31805288 | 31805406 |
| chr_2 | g8615 | g8615.t1 | exon | g8615.t1.exon6 | 31805649 | 31805982 |
| chr_2 | g8615 | g8615.t1 | cds | g8615.t1.CDS6 | 31805649 | 31805982 |
| chr_2 | g8615 | g8615.t1 | exon | g8615.t1.exon7 | 31806199 | 31806730 |
| chr_2 | g8615 | g8615.t1 | cds | g8615.t1.CDS7 | 31806199 | 31806730 |
| chr_2 | g8615 | g8615.t1 | exon | g8615.t1.exon8 | 31806799 | 31807169 |
| chr_2 | g8615 | g8615.t1 | cds | g8615.t1.CDS8 | 31806799 | 31807169 |
| chr_2 | g8615 | g8615.t1 | exon | g8615.t1.exon9 | 31807631 | 31807733 |
| chr_2 | g8615 | g8615.t1 | cds | g8615.t1.CDS9 | 31807631 | 31807733 |
| chr_2 | g8615 | g8615.t1 | exon | g8615.t1.exon10 | 31808260 | 31808337 |
| chr_2 | g8615 | g8615.t1 | cds | g8615.t1.CDS10 | 31808260 | 31808337 |
| chr_2 | g8615 | g8615.t1 | exon | g8615.t1.exon11 | 31808498 | 31808734 |
| chr_2 | g8615 | g8615.t1 | cds | g8615.t1.CDS11 | 31808498 | 31808734 |
| chr_2 | g8615 | g8615.t1 | exon | g8615.t1.exon12 | 31808970 | 31809099 |
| chr_2 | g8615 | g8615.t1 | cds | g8615.t1.CDS12 | 31808970 | 31809099 |
| chr_2 | g8615 | g8615.t1 | exon | g8615.t1.exon13 | 31826400 | 31829483 |
| chr_2 | g8615 | g8615.t1 | cds | g8615.t1.CDS13 | 31826400 | 31829483 |
| chr_2 | g8615 | g8615.t1 | exon | g8615.t1.exon14 | 31830867 | 31831012 |
| chr_2 | g8615 | g8615.t1 | cds | g8615.t1.CDS14 | 31830867 | 31831012 |
| chr_2 | g8615 | g8615.t1 | exon | g8615.t1.exon15 | 31831435 | 31831714 |
| chr_2 | g8615 | g8615.t1 | cds | g8615.t1.CDS15 | 31831435 | 31831714 |
| chr_2 | g8615 | g8615.t1 | exon | g8615.t1.exon16 | 31832636 | 31832767 |
| chr_2 | g8615 | g8615.t1 | cds | g8615.t1.CDS16 | 31832636 | 31832767 |
| chr_2 | g8615 | g8615.t1 | exon | g8615.t1.exon17 | 31833043 | 31833225 |
| chr_2 | g8615 | g8615.t1 | cds | g8615.t1.CDS17 | 31833043 | 31833225 |
| chr_2 | g8615 | g8615.t1 | exon | g8615.t1.exon18 | 31833285 | 31833485 |
| chr_2 | g8615 | g8615.t1 | cds | g8615.t1.CDS18 | 31833285 | 31833485 |
| chr_2 | g8615 | g8615.t1 | exon | g8615.t1.exon19 | 31833564 | 31833791 |
| chr_2 | g8615 | g8615.t1 | cds | g8615.t1.CDS19 | 31833564 | 31833791 |
| chr_2 | g8615 | g8615.t1 | exon | g8615.t1.exon20 | 31833856 | 31834042 |
| chr_2 | g8615 | g8615.t1 | cds | g8615.t1.CDS20 | 31833856 | 31834042 |
| chr_2 | g8615 | g8615.t1 | exon | g8615.t1.exon21 | 31834118 | 31834232 |
| chr_2 | g8615 | g8615.t1 | cds | g8615.t1.CDS21 | 31834118 | 31834232 |
| chr_2 | g8615 | g8615.t1 | exon | g8615.t1.exon22 | 31834300 | 31834451 |
| chr_2 | g8615 | g8615.t1 | cds | g8615.t1.CDS22 | 31834300 | 31834451 |
| chr_2 | g8615 | g8615.t1 | exon | g8615.t1.exon23 | 31834534 | 31834835 |
| chr_2 | g8615 | g8615.t1 | cds | g8615.t1.CDS23 | 31834534 | 31834835 |
| chr_2 | g8615 | g8615.t1 | exon | g8615.t1.exon24 | 31835151 | 31835345 |
| chr_2 | g8615 | g8615.t1 | cds | g8615.t1.CDS24 | 31835151 | 31835345 |
| chr_2 | g8615 | g8615.t1 | exon | g8615.t1.exon25 | 31835411 | 31835519 |
| chr_2 | g8615 | g8615.t1 | cds | g8615.t1.CDS25 | 31835411 | 31835519 |
| chr_2 | g8615 | g8615.t1 | exon | g8615.t1.exon26 | 31835676 | 31835993 |
| chr_2 | g8615 | g8615.t1 | cds | g8615.t1.CDS26 | 31835676 | 31835993 |
| chr_2 | g8615 | g8615.t1 | exon | g8615.t1.exon27 | 31836150 | 31836307 |
| chr_2 | g8615 | g8615.t1 | cds | g8615.t1.CDS27 | 31836150 | 31836307 |
| chr_2 | g8615 | g8615.t1 | exon | g8615.t1.exon28 | 31836367 | 31836988 |
| chr_2 | g8615 | g8615.t1 | cds | g8615.t1.CDS28 | 31836367 | 31836988 |
| chr_2 | g8615 | g8615.t1 | exon | g8615.t1.exon29 | 31837073 | 31837142 |
| chr_2 | g8615 | g8615.t1 | cds | g8615.t1.CDS29 | 31837073 | 31837142 |
| chr_2 | g8615 | g8615.t1 | exon | g8615.t1.exon30 | 31837233 | 31837336 |
| chr_2 | g8615 | g8615.t1 | cds | g8615.t1.CDS30 | 31837233 | 31837336 |
| chr_2 | g8615 | g8615.t1 | exon | g8615.t1.exon31 | 31837532 | 31839132 |
| chr_2 | g8615 | g8615.t1 | cds | g8615.t1.CDS31 | 31837532 | 31839132 |
| chr_2 | g8615 | g8615.t1 | TSS | g8615.t1 | NA | NA |
| chr_2 | g8615 | g8615.t1 | TTS | g8615.t1 | NA | NA |
Sequences
>g8615.t1 Gene=g8615 Length=10569
ATGGGAGCGAAAGGTAGTGTGGAAGCCGCAAAAATGAATGCAGATAACTGGGGTCATCTG
GAGCGCGGACGAAGTAGTCAGTACGGCGGCGGTTATCGTCACAATCAACGCTCACAATCA
TTAAATAGAGGACAGGCTCTTTCACGTGCAGAAGTCGGAGGACAATCGGGCTGCGCAAGT
TGTGCAATGGGAAACAAATTGAGCTGCTCGTGTGCGCCATTGATGCGTAAAGGTTATCGT
TATGAAGACTCACCGTGGCAAACATCTCGCCGTCGTGATGGGCATCTCCTGAGGTTGTGG
GCGGAAGTGTTTCATGTGGCTGCGAGTGGTGCTGGTCAAGTGAAATGGCAACAAGTGTCT
GAGGATCTCGTGCCAGTCAACATCACATGCATACAGGATTCACCAGAATGTGTGTTCCAT
ATTACTGCTTATAATAGTCAAGTGGATAAAATTCTTGATGTTCGACTTGTTCAACCTGGT
ACAAGAATTGGACAAGCATCAGAATGTTTCGTATATTGGAAAGATCCAATGACAAACGAT
ACCTGGGGTCTAAATTTTACATCACCAATTGATGCGAAACAATTTAGGGAGTGCTGTTCA
CCATCATTTAAATTCTCGCGCAAGGCATCATCAAGTTATTCACTAAAATTAGATCCACCT
GGAAAAGGCAAAGTGAAACCAAAACGTAAACCGTTAAGTACACCAGCAAGTCCATCACGA
GCACGTGAACCTCAATGTACTTGCATGACTGCTGAGCAATATGCTCGAATTAAAGCACAA
GATCCACGATATCGAGGCTCATCAACTTTACCTCGACCAACAACAAAAGCCACCGATACT
GATTTAATGCGATCAGAAAAGCCTGTCACAACAGCATCAACGACATCACTTTATGATAAT
GTAACATCAAGCAATCAAGGACAAGGACAAGAAACTTTACAACGTCAAAAATCAGACACG
AGCACAATGACAAATATTTGTACAGCATCGGTTGGCACGCAGCAAAATCATGTTGGTTTA
CAAATAAGTCAGGATGATGCAAGTGATAAGAATGCACAACGTGAAGAGACTTCAAAATCA
GAAGGTACACAAGCTGGTGGAACATTACAAAATCAAAAGACAGCAGTAAAAACTTCAATT
TCAACTGGAACGGGTACTCGCACTAAAGACTATAATGAGAATATTATGCATGAACATCAG
ATTACAAGTAGCAAACGTAACAAATCAAAGAGCACTGAAGATATGAATGTTGATGCTGGA
ACACTCAAAAAGATGCTTAAACCACTTCATAACAACGAGAGTCCAGTGACATCACCTGAA
ATGGGTAGACGTCGCTACAATTACTACAATGCAGCTACAAACACAGCACCACATGGACAT
CAACATATTATACATAATAATCATTTCAATCATAATTCTATGTCACGTCAATCAAGCCAA
TCTTCACGTTTTTCTGGATCTCGATCATCACATGAGATTGGACGTGGATATCAACCACCA
CGTGGACTATATCTGGAATTGGAAAAGGAACGTTGCGGACTGGAAGGATCACCACCATCA
GATAATGTAATGTTTGATAATCAATGTTATGCAACTACTCCAAGCTCAAGTAATGGAAAT
TCTGATCAGGAACCTGGCGGCTATGGATCGGGAACTGGTCGACCAAGACACCATTCGCAT
CCTCATCAGCAGCAGCCAAATGTGACGCCAACACCGGGTTCACCGACATCACGTCTTTTA
CTCGAATATGAAATGCATTTGCGCAACACGCTGGCCAAAGGAATGGATGCAGAATCATAT
AGTCTGCACACATTTGAAGCTCTATTATCACAAAGATCATCCTCAAGTGCCAAATCTTCT
ACCCTACCTTTACCACATCGCTTAAATGTCGAGCACTCTTACATACCTAAAGAACGTGAA
CGTGATGGATATTATAGTGACCGCAATGAATTAATTAGAGAAAGAGAACGCGAACGTGAG
CGTGAACGTGGTTATTTAAGTGACCACAATTCAAGTTATTCAACATCACGTTGCGCATCT
TGCATTGGTGAATCTGCTCGTGCACAGTGGTTCCGTCATTCGGGTGGCTGGCGCTCGGGT
AGCTCAACACTTGGTTCGGGCACGAATTTGATCTCACAAAGCACAACTGGTCATCGACGT
TCACCATGGGACTCATTGCCCTCGCTTAAACAGGATGGATCACTCAATGACTCAGGCTAT
AAAAGCAATCGCGCTGACTCGTTTGAACAACGAGGTGTTTTTGATCGACAAGATAGCTTA
CGCTCAGATTATTTGAGTGATCGTGAAACTCGCTATGGAATTGTTCAGCAAGCATCAATA
GATAGCACTGATTCCCGTTTGTGTTATCTTACTTCATCTGAGCAAACAGCTTCAACTGCA
TCATCAAATAATAATAGTGAATCAAACGATAAAAATAAATCACTAACACTCGATTGTTGT
TGCGTCGTCGTTCAAATTACCCCTGGGGCAACGGGCAAAGGATCGCAACAATCCGCAACT
GTAGGCGATGGATCGAAAAAACATGGCGATGGGCTAAGTAGTCGTGCGAATGGCGCGGCA
CCAATTTGTCGTTGCAGCAGTGCCGTTGCCAATCATATTTCGTCACGATCAGATGATGCT
GCTGCTTCCACTTCTTCAAATATTCCTGGTGGTGCAACAACTTCTACGCCATCAACGAGT
CATAAATCCATGATGATGACTGGACAATCATTTGGTGCCAAAAGTAGATCCGGTTCACTC
GATCAACTGCTTTTCCTGACAGATCAACTCGCTGCACATACATTGCAGAGACAGGAAAAC
AGACATACGGGCCGTAGAGAAATTACAGCCGATGATTTATTTAATTATCTAAAAGACATC
AATGGCGATCTTAAGTTTGTAGATAAAAAACGTTTAGCTCAATTATTGTTACAAAATACT
GAAGAAATGGTTGCACAACAACATCAATTACAACAGCAGCAGCATCAGCAAAGTGTCACT
GGTACCATACGAAAGCATACGCCAGTTAGTCGACAAGAATCTGGTGGAGAGAAGCAGATT
CATTTTGTCAATAATATCGGTCCAACACCACCGCCTACGAATCCAATCGATGCTCCAACA
AAAAGCATTCTTCAAACATCGCGCAAGTCTAAATTTAGTAGTGGAAATAAAGTTGAAATG
CTTGATATTGCACAGCAGCAAAAAGAATTTAGTGATGAATGGCTTAATCGTTCTCATTCA
CAACGCATTTCATCGCGTTCTGTTGAAGTGTCTTCCACAATGCCAAAACCAGATCAAATT
CAATCTAGCAAAAAGCATCATAAACATCATCAGCGGCATTTTTCTGGTCCTGAAGATCTT
GAAGCACTAAAAAAGGACATTGCACATTGGCTTGAACGACATCCATATAAGAAAGATGCT
GCATTACTTGACCTTATTGAAACTGCTGCTAGACTTAAACATGAAAAACATCAACATCCA
CAACAAGGCATAATGAAGCCAAAAACACTAATTAAAAATGAATTTGCTGACATTATTCGT
CCACCTTTGCCACAAAAGCAAAGATCACAGCAGCAGCAACAGCCTCCTCCACTTCCAATG
AAACAATTTCAACGACAAAAGTCAGCCGATGACCTGCGTGTCCTTAAAAATAACATATTA
GAATGGTTAACAAAACAACAGATTATGAATCAACAAAGGTTACAATTACAACAGCAACAA
ATGGTGCCATTGAAAAGTGCCATAGTAGAGTCAAAAGCAGGTGAGTCAGTCAAGTCACAG
ACGACAACTGCACCACCGCCATTGCCCCGTAAAACGCACCAGAAGTTGCATAAACGTCAT
TCATTAGGTCCAAGTGATGAATCATCAGATTTTCATGAAATTCCACTTGATTGGATTCAA
ATTCCAATTGAAAAACTTAATAAAATGCGTGAAGTTCAAAAGAGTTGTGCTGAAATTAGT
CGTAAAGGAAGTGGCAAAGAACAAAAGTCCACACTTCCATCATCGCATGAGCGAGCACAT
CATAGATCCGTTGAACGTAGGTTACGTCATTCAGCAAGTGAAGTAGTTCAATCGAATGTA
GATAGAAGTCATAAGATAATGCAACAGCAGCAACCGCCAAGTCAAGTTCAATATCAATTA
ATTCAACATTCACAACAAATGCCTATGCAAGCTTCTTCTTCTCAGCAGCAACAACAGCAA
ATTCAGCAGCAGCCACAATATCAAATAGTTCAACGCTATCGCGAACCAACGAGAGTAGTA
GCAGAACGTCATCATAGTCATGATCATCATAATGGCCATCATTCGAGTGGTGAACAAAGA
ACATCGAAAAGGGATAAGCCCGCTAGGCATCATCGACAGACACAACGTTCTGCAACGACA
AGTAATATGTTGCCAGGTCGACAACCAAGTAGTAGTAGTCATGGAGGTGGCAGCAGTTCG
CATCATAGCGTTGGAAGTGATCTTAAGGCAATTTATCAGTCAACAACTTCGCTTGTGCGT
TGCGATGACCCTATGTGTCCACTGTTGCCTATTTGTACGGATCCAAACTGTTATTTGAAT
GCCAATTCACACTACGATACGCCACGACGTGCCTCATTACCACCGCGTTCAAATGAGATG
CTACAGGATAGCGATATCTGTACAGATCCGCGTTGTTGCGAGTCGCTTCCAATATGTACA
GATCCTCGTTGCTGTGGCACGATTGCTCGCTCAAAATCAAAAGCCGCCATTGGCGTCAGT
GCCCATCACAAATTCAAAAGCAATTCACTGCCGCGTTGCGTTGAATCACAATCAACAAGA
CGCTCCGATCTCTTTTTATCGGGTTTATCAAAAGACGAATCGTACTCGTCACTCCCTAAA
TCTGCGACACTCTCGTCTGCCACTGCTCAAGCATCATCTGCACATAATAAGCCTATTACT
GCTACTAACATAACTACAACAACTACTGCTAGTCATAGTAATAATAAAATAAATAATATT
AATCATAGTCATAGTAAAACACGTGCACATCGCAATGGTAATAATAAGCTCATGAAATCG
GCCTCGGCTGCGTCACTTAATTCACGCCGTCGTCGTCATAAGACAGTTCATTTTGGCGAA
AATTTGCTTCGCGAAGTTTGTCAAAATCGTCAGCTTATTAAACCGTTAACAGATCAGCCG
TCCAATTCGTCGTCGACATTGCAGCCAAATATTCAAATGTTATATAATTTTGTAGAGGGT
GTATTGAGTGCCTGGGTAGATGAAGAGGATGACGATAATATCAAATCGGGTCCCGATTCA
GAACCTGAACGGGGTGCTATTTTAAAGCCCATGCATCGATGCAATAGGGCACGCTTACAA
ACAATTCGTCGTGTAGTTAATGAAGCGGCTGCTCTTAAAGGCACTCTTAAACTTGGCAAC
TCACGCTATCGCCATCGACATTGGCGTGGCACAGCAAAAGACTGTAATGAGCGATTTCTT
CGGAAGATCAGCGACGATGATCGAATGAGTTTAACGACCGCAATATCTGATGAGGATGAC
GGTGAAAGCATCATGGCATCACCATATAAGGCAAAAGCACAGGGTACAGCTTCAGCTTCA
TTTAATTGCACGGGTGCTGTACGAAAGGCAGGCTTTTTATCAGTTAAAAAATGGCTATTG
CGCAAAAAGCATCAAATTGAATTGGCTCGTAAACGCGGCTGGAAGGGTTATTGGGTCTGT
TTAAAAGGAACAACGTTGCTCTTCTATCCATGTGATTCGCGTGAGGGACGTTCAGTTGAA
GCAGCACCAAAGCACTTAATCATAGTCGATGGCGCAATCATGCAGCCAATCCCCGAGCAT
CCCAAACGTGATTACATATTTTGCCTTAGCACCGCGTTCGGAGATGCTTATTTGTTTCAA
GCGCCATGTCAAGTGGAATTGGAAAATTGGGTCAACAGCATTCATTCAGCTTGTGCTGCA
GCATTCGCACGTCATCGTGGCAAAACTGGAACATTGCATTTACTACAAGAAGAAATTTTC
CGTTTGGATAAAGCAATTGAATCGGATCACAAGCTGAAACATATGGCTGATTTACAATCG
AGTGTCGTCACCGACCAAGATACTAGAATTCAAATTCAACAGCAGATTATTACATGGGAG
GAAAATTTGGAACGCTTACATTGTGAGCAGTTCCGTTTGCGTTGTTACATGGCTTCCTTA
CAATGTGGTGAATTACCAAATCCTAAATCATTGCTCACTCACGTCTCACGCCCTACAAAA
AATACACTCAATAAGTTGGGCGTCTTTACGGTTTCATCATTCCATGCATTCATTTGTGCT
CGTTCACCATCGCTTTTGAACAATTTGCTCGCAGGTCGCGGTGCCACTAAACGTCGTCCA
CCGCTGTTATCACGTTCAAATAGCGGATCTAGTCGTCGCTCTATGCAGATGAGCTCCCGT
GATGATTCAGAAAAAAGTTATAACGTTCCACTACCAGATAATAGCTATGTTACGGTATAT
TTACGTGAGAGTATGACAGTCGAAGAATTCTTGGCAACTGCATGTGTTAGAAAAAATCTT
AATCCAATGGAACATTTTGTTCGTGTTAAGAAACGACGTGAAATGGAAGATCATAATTAC
TTTGTACCGCATCGAAATGATTTAATTGAAACTTATTTGCATACACATGAAATAGTCGAA
GTTTGTGCAAAAATTTTATATCAAGTTGAACTTCAACGTTCAACATTAGAACAAATGTGG
GGCTTCTCGGTCGAAGCTGAGCTAATTGAGAATGCCGATCGTCAAGATGAATTATGTTGT
TATGTTAGTCGTGTTGAGGATAAAAGTGTCGCTCTACAAAACGGTATTATTAAGGGAGAT
GAAATTATTGTTATCAATGGTGCCATTGTGTCCGATTTGGATATGATGTATTTAGAGAGT
GTTTTGCAAGAAGAGCAAGCGTTATGCATGATGATGAGATCATCACGAGTTGAACCACCA
GATCTTACATGCATATTGCGTTCAACTGATGATATAATCGAATCTTTGGTATGTCCACCT
CCACCAACTGATCCAGGCATGATGAGTGAAGAAATGATTACTGGATTAATTGTTCCTGCA
CCTAATTGGAAACGACCTGGCGTTGAACATCACGATTCTGTGACATCAGATCAGCAGCTC
ATTGACAGCAGTCGCCAAAAGGTGCAATCACGCACGAGTAGCTTTGAGATAGAAAATTTG
CTAAAGACGGCTGAGCAAGTGACAACATATTGCCGTTCACCGCAAGAGACACGCAAATCG
AGTCCCACTGGTTCTGTAACATCATCGGCAGCATCGAACGCAGTCCTGACTCCATCACGT
CAATTAACTGACGCAGAAAAATTGCGAAAAGTCATCTTGGAATTAGTTGATACGGAACGA
GCTTATGTTAAGCATTTGAACAATCTTCTTGAGCACTACTTGGAGCCATTGAAACGTGAA
ACTTTCCTCTCCAATGCTGAAATAACGGCTTTATTTGGTAACATTCAGGAAATTGTCACA
TTCCAGCGTCAATTTTTACAAAATTTAGAAGAAGCCTTAGAGATAGAGCCCGATTTCCAC
AGATTCGATCATTCTAGCCAATTCAGAAATGTTCTTTTTGCTATTGGATCTGCATTTTTA
TACTACGTTAATCATTTCAAATTGTACTCTTCATTCTGTGCAAGTCATAGTAAGGCACAG
AAAGTTTTACATCCAAATGAAGGCAATCAAGCATTACAGGAATTTTTACTCTCTAAAAAT
CCAAGACAAGAACATAGCAGCACATTAGAATCATATCTCATAAAACCAATACAAAGAATT
TTAAAATATCCCTTGTTGCTGCAGCAGTTGAAAAATCTAACTGATCCTTATGCAGAAGAG
CATCAACATCTTATTGAAGCTTTAAAAGGAATGGAAAAAGTTGCAGAACATATTAATGAA
ATGCAGCGAATTCATGAAGAATATGGTGCAATATTTGATCATCTTTTTAGACAGCATCAA
AAGTCTTGCAAACAACCAATTGATCTTAGTCCAGGTGACTTGCTATATTATGGTGGAGTC
GAATGGCTCAACATTTCGGACTTCCTTGGTAAAATTAAAAAGGGATTAGAATTGCATGCC
ATGTGCTTTGTCTTCAAATCAGCAGTTGTCTTCCTATGTAAAGAGCGTCTTCGTCAAAAG
AAAAAATTAATGGGCGTATCAAATAAAAATGCTCCCAATGAGGTTGAAATTATTCGCTAT
CAAGTTCTAATTCCGGTCACTGAAGTGCAAGTTCGTGCGTCCTCGGCAAAGGACATGGAT
TCGCATTTCCTTTGGGAATTAATTCATTTACGTTCGCAACTACAACGACGCTCAGAAAAG
GTCTATGTTTTATCAAATAGTACAGCTGACTTCCGAAATGCATTCCTTAAAACAATTCGT
CAAATCATTCGTGAAAGTGTTCGTAATATGTCGATTCCAATTAAAGAACGTGGCAGTATC
AGTTCAGTTTCTTCTGCTGGCGGTGGTCCACACTTTTCTGGCAATTCACAAACATTAGAG
CGACCAAAGCAGACATCGAGCATTCAGCAAGGCTCACAGACTCTTGGAAAGCCAAAGAAA
AAGAATAATCAACGACTTAGTGCTGGTAATATCGATTATGACAATCTTCATGGTAGTTCA
CAAGAGCACGACTATGGTATGGAACAAGAAGAGGCACCACCAATCTTTAGAATCCGCAGT
AAAACTGTTGGTGATGATGGCGGACCACCACCCGTCCCAAAAAGAACGACATCAGAATTG
ACTACAGAAAAAGATCCGGGTATAAAATCAGAAGGTGAAGATGAATCTCTTATGGGTCAT
AGATCGAAATCTTTGGGCCGAACACCTAATCATTTAACTTTAAGCACGACATCAACGCTC
TCGGTTGGAAGTACTGGTAGCCAAGCGCGTTTGATTCAATCTTCTCACGCGCCATCGCAT
TATCAGCCTGTTTTAATGAAAGATTTAGGTAAGACATCTTCAACCGATTCGGGAGAATCG
ATAAGTTTTCACACAGAAAAATCATCAGACTCAACCTCGGGCGTTGACGTTAATGATGAT
AACTATCAGTTGACGGACGAGATTGTTGATAAGCATTTGGATGATTTGAAAAAGGAATGT
TTGTCATATGAGACACGTGATGTGGCAAAGTTCATGGAAAAGCTTAAGACGCAATCGGAA
TCTTTGGATGGCGGTGATGGCAGTCAAGATGAGAAGAAGGCCGAGATTGTTGCATTGGAA
AAGAAATCAGCTCGTCGTGAGTCAGAATCAAGAAAAGAATTGGAAATAATGATGAAGCAA
AAAGAAGAAAAAGGAAAACGAGACTCAACTTCATCAATTAAATCGCATAGAAAATCTTCA
TCATCATCACCGACATTGAGAAAACCAAAAACCATCGATATGGATGCGACTTCACATTTG
TCACCTACAAGACAACAAATTGACAGCAGTCAGGTACAAATTATTAAGATAAAATCGCCA
AGTGGCAGTCGTAGACCATCACGTGAAGCATCGCGTAATAATTCAGTTGAACGTTCACCC
TCAAGGGAAATGCAACAACAGCAAACATTAAAGAAACCTGAAGGTGGTATTTTAAAGAAA
CCATCACCTAAATTTGGCAAAGCGAGTGAATATAAATTGTCAAATAGTTTAAGACCAGAC
AGTTTCATCAGTCCATTTAGCAGCTTTGAATCTAAAAGCGACAAACTTTCACCATCATCT
GAAATATTGCCAACATTCTGTGCAAAAGAAGCACAAAAGCGTGCTTCATTATCTGACTAT
GAAAGAGATCCACAAGACTATCATCATCAGGCAATGAAATCGAGATCTTTAGAAAGCAGC
TTGGAGCATTTAAAATCAGCATTGAAGCATCAAAGCAGCTATGAACAGCAACAACCATAT
TGTTTGTCACCAATGCATGATCCAAATCGATACTATAACTTGTCAGCTCAACATTCAATT
GAATCAAATCGATCACCAGTTCGTTATTGTTCACCAGTTCCACCACATTATTATAATGAA
CCATTTTATGAATATCCAAGACATAAAGCAAGACAACGTGAATCTCGTTCACTTGAACGA
CCTGATTTTTCACGTCAAAGTTCATCAGAATATGAAAGATATTATGAGGAACCACCACCT
TATTCTCATCATCATGATGAACAACGTACAAGACGTCATAGTGTCTATGAACATCGTTCA
ATTCCCTATCATTACTATTCAATGTCACCCGATGACTATCTTATGTCGGCCTCTTCTCAT
TACGAACAACCATCAGCTTGTGTCGATTGCTATTATCAAACGTATCGACAACCATCGCAT
TTGCATCACTATACACAACAACCACCGCCCTTACCAAAGCGCAATTCATCATCATCATCA
CAACAGCAGCAGCAACAATCTAAAAGTCCATCGCAATCACGTCAACGTCAATCGCGGTCT
CGTAAAAAACTCTCGCGTCGAATGTCTTCCAATTATTTCAATAAATCCTTTGACGATGAT
GAAAATATGAATAGCAGCGGCACTTCATCCAACAAGCCAATGCACGATAATGAAGAGATT
CGTGTTTAA
>g8615.t1 Gene=g8615 Length=3522
MGAKGSVEAAKMNADNWGHLERGRSSQYGGGYRHNQRSQSLNRGQALSRAEVGGQSGCAS
CAMGNKLSCSCAPLMRKGYRYEDSPWQTSRRRDGHLLRLWAEVFHVAASGAGQVKWQQVS
EDLVPVNITCIQDSPECVFHITAYNSQVDKILDVRLVQPGTRIGQASECFVYWKDPMTND
TWGLNFTSPIDAKQFRECCSPSFKFSRKASSSYSLKLDPPGKGKVKPKRKPLSTPASPSR
AREPQCTCMTAEQYARIKAQDPRYRGSSTLPRPTTKATDTDLMRSEKPVTTASTTSLYDN
VTSSNQGQGQETLQRQKSDTSTMTNICTASVGTQQNHVGLQISQDDASDKNAQREETSKS
EGTQAGGTLQNQKTAVKTSISTGTGTRTKDYNENIMHEHQITSSKRNKSKSTEDMNVDAG
TLKKMLKPLHNNESPVTSPEMGRRRYNYYNAATNTAPHGHQHIIHNNHFNHNSMSRQSSQ
SSRFSGSRSSHEIGRGYQPPRGLYLELEKERCGLEGSPPSDNVMFDNQCYATTPSSSNGN
SDQEPGGYGSGTGRPRHHSHPHQQQPNVTPTPGSPTSRLLLEYEMHLRNTLAKGMDAESY
SLHTFEALLSQRSSSSAKSSTLPLPHRLNVEHSYIPKERERDGYYSDRNELIRERERERE
RERGYLSDHNSSYSTSRCASCIGESARAQWFRHSGGWRSGSSTLGSGTNLISQSTTGHRR
SPWDSLPSLKQDGSLNDSGYKSNRADSFEQRGVFDRQDSLRSDYLSDRETRYGIVQQASI
DSTDSRLCYLTSSEQTASTASSNNNSESNDKNKSLTLDCCCVVVQITPGATGKGSQQSAT
VGDGSKKHGDGLSSRANGAAPICRCSSAVANHISSRSDDAAASTSSNIPGGATTSTPSTS
HKSMMMTGQSFGAKSRSGSLDQLLFLTDQLAAHTLQRQENRHTGRREITADDLFNYLKDI
NGDLKFVDKKRLAQLLLQNTEEMVAQQHQLQQQQHQQSVTGTIRKHTPVSRQESGGEKQI
HFVNNIGPTPPPTNPIDAPTKSILQTSRKSKFSSGNKVEMLDIAQQQKEFSDEWLNRSHS
QRISSRSVEVSSTMPKPDQIQSSKKHHKHHQRHFSGPEDLEALKKDIAHWLERHPYKKDA
ALLDLIETAARLKHEKHQHPQQGIMKPKTLIKNEFADIIRPPLPQKQRSQQQQQPPPLPM
KQFQRQKSADDLRVLKNNILEWLTKQQIMNQQRLQLQQQQMVPLKSAIVESKAGESVKSQ
TTTAPPPLPRKTHQKLHKRHSLGPSDESSDFHEIPLDWIQIPIEKLNKMREVQKSCAEIS
RKGSGKEQKSTLPSSHERAHHRSVERRLRHSASEVVQSNVDRSHKIMQQQQPPSQVQYQL
IQHSQQMPMQASSSQQQQQQIQQQPQYQIVQRYREPTRVVAERHHSHDHHNGHHSSGEQR
TSKRDKPARHHRQTQRSATTSNMLPGRQPSSSSHGGGSSSHHSVGSDLKAIYQSTTSLVR
CDDPMCPLLPICTDPNCYLNANSHYDTPRRASLPPRSNEMLQDSDICTDPRCCESLPICT
DPRCCGTIARSKSKAAIGVSAHHKFKSNSLPRCVESQSTRRSDLFLSGLSKDESYSSLPK
SATLSSATAQASSAHNKPITATNITTTTTASHSNNKINNINHSHSKTRAHRNGNNKLMKS
ASAASLNSRRRRHKTVHFGENLLREVCQNRQLIKPLTDQPSNSSSTLQPNIQMLYNFVEG
VLSAWVDEEDDDNIKSGPDSEPERGAILKPMHRCNRARLQTIRRVVNEAAALKGTLKLGN
SRYRHRHWRGTAKDCNERFLRKISDDDRMSLTTAISDEDDGESIMASPYKAKAQGTASAS
FNCTGAVRKAGFLSVKKWLLRKKHQIELARKRGWKGYWVCLKGTTLLFYPCDSREGRSVE
AAPKHLIIVDGAIMQPIPEHPKRDYIFCLSTAFGDAYLFQAPCQVELENWVNSIHSACAA
AFARHRGKTGTLHLLQEEIFRLDKAIESDHKLKHMADLQSSVVTDQDTRIQIQQQIITWE
ENLERLHCEQFRLRCYMASLQCGELPNPKSLLTHVSRPTKNTLNKLGVFTVSSFHAFICA
RSPSLLNNLLAGRGATKRRPPLLSRSNSGSSRRSMQMSSRDDSEKSYNVPLPDNSYVTVY
LRESMTVEEFLATACVRKNLNPMEHFVRVKKRREMEDHNYFVPHRNDLIETYLHTHEIVE
VCAKILYQVELQRSTLEQMWGFSVEAELIENADRQDELCCYVSRVEDKSVALQNGIIKGD
EIIVINGAIVSDLDMMYLESVLQEEQALCMMMRSSRVEPPDLTCILRSTDDIIESLVCPP
PPTDPGMMSEEMITGLIVPAPNWKRPGVEHHDSVTSDQQLIDSSRQKVQSRTSSFEIENL
LKTAEQVTTYCRSPQETRKSSPTGSVTSSAASNAVLTPSRQLTDAEKLRKVILELVDTER
AYVKHLNNLLEHYLEPLKRETFLSNAEITALFGNIQEIVTFQRQFLQNLEEALEIEPDFH
RFDHSSQFRNVLFAIGSAFLYYVNHFKLYSSFCASHSKAQKVLHPNEGNQALQEFLLSKN
PRQEHSSTLESYLIKPIQRILKYPLLLQQLKNLTDPYAEEHQHLIEALKGMEKVAEHINE
MQRIHEEYGAIFDHLFRQHQKSCKQPIDLSPGDLLYYGGVEWLNISDFLGKIKKGLELHA
MCFVFKSAVVFLCKERLRQKKKLMGVSNKNAPNEVEIIRYQVLIPVTEVQVRASSAKDMD
SHFLWELIHLRSQLQRRSEKVYVLSNSTADFRNAFLKTIRQIIRESVRNMSIPIKERGSI
SSVSSAGGGPHFSGNSQTLERPKQTSSIQQGSQTLGKPKKKNNQRLSAGNIDYDNLHGSS
QEHDYGMEQEEAPPIFRIRSKTVGDDGGPPPVPKRTTSELTTEKDPGIKSEGEDESLMGH
RSKSLGRTPNHLTLSTTSTLSVGSTGSQARLIQSSHAPSHYQPVLMKDLGKTSSTDSGES
ISFHTEKSSDSTSGVDVNDDNYQLTDEIVDKHLDDLKKECLSYETRDVAKFMEKLKTQSE
SLDGGDGSQDEKKAEIVALEKKSARRESESRKELEIMMKQKEEKGKRDSTSSIKSHRKSS
SSSPTLRKPKTIDMDATSHLSPTRQQIDSSQVQIIKIKSPSGSRRPSREASRNNSVERSP
SREMQQQQTLKKPEGGILKKPSPKFGKASEYKLSNSLRPDSFISPFSSFESKSDKLSPSS
EILPTFCAKEAQKRASLSDYERDPQDYHHQAMKSRSLESSLEHLKSALKHQSSYEQQQPY
CLSPMHDPNRYYNLSAQHSIESNRSPVRYCSPVPPHYYNEPFYEYPRHKARQRESRSLER
PDFSRQSSSEYERYYEEPPPYSHHHDEQRTRRHSVYEHRSIPYHYYSMSPDDYLMSASSH
YEQPSACVDCYYQTYRQPSHLHHYTQQPPPLPKRNSSSSSQQQQQQSKSPSQSRQRQSRS
RKKLSRRMSSNYFNKSFDDDENMNSSGTSSNKPMHDNEEIRV
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 23 | g8615.t1 | CDD | cd01230 | PH1_Tiam1_2 | 1865 | 1990 | 1.20452E-79 |
| 24 | g8615.t1 | CDD | cd00992 | PDZ_signaling | 2226 | 2304 | 4.75615E-7 |
| 22 | g8615.t1 | CDD | cd00160 | RhoGEF | 2448 | 2639 | 3.28389E-54 |
| 21 | g8615.t1 | CDD | cd01255 | PH2_Tiam1_2 | 2642 | 2813 | 7.01523E-96 |
| 20 | g8615.t1 | Coils | Coil | Coil | 3084 | 3104 | - |
| 19 | g8615.t1 | Coils | Coil | Coil | 3522 | 3522 | - |
| 16 | g8615.t1 | Gene3D | G3DSA:2.30.29.30 | - | 91 | 208 | 7.9E-19 |
| 14 | g8615.t1 | Gene3D | G3DSA:2.30.29.30 | - | 1862 | 1988 | 8.7E-32 |
| 18 | g8615.t1 | Gene3D | G3DSA:2.30.42.10 | - | 2221 | 2316 | 1.5E-7 |
| 17 | g8615.t1 | Gene3D | G3DSA:1.20.900.10 | - | 2438 | 2640 | 2.7E-70 |
| 15 | g8615.t1 | Gene3D | G3DSA:2.30.29.30 | - | 2642 | 2804 | 4.2E-70 |
| 32 | g8615.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 214 | 321 | - |
| 66 | g8615.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 267 | 321 | - |
| 40 | g8615.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 342 | 385 | - |
| 63 | g8615.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 358 | 385 | - |
| 47 | g8615.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 472 | 492 | - |
| 64 | g8615.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 472 | 501 | - |
| 36 | g8615.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 533 | 574 | - |
| 57 | g8615.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 533 | 547 | - |
| 39 | g8615.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 704 | 753 | - |
| 52 | g8615.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 704 | 745 | - |
| 53 | g8615.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 832 | 853 | - |
| 61 | g8615.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 880 | 903 | - |
| 72 | g8615.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1072 | 1117 | - |
| 56 | g8615.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1077 | 1099 | - |
| 35 | g8615.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1184 | 1206 | - |
| 60 | g8615.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1184 | 1201 | - |
| 62 | g8615.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1252 | 1289 | - |
| 33 | g8615.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1253 | 1268 | - |
| 44 | g8615.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1317 | 1407 | - |
| 50 | g8615.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1317 | 1352 | - |
| 71 | g8615.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1353 | 1407 | - |
| 54 | g8615.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1421 | 1485 | - |
| 67 | g8615.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1421 | 1444 | - |
| 69 | g8615.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1454 | 1485 | - |
| 46 | g8615.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 2117 | 2146 | - |
| 68 | g8615.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 2121 | 2146 | - |
| 49 | g8615.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 2411 | 2433 | - |
| 65 | g8615.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 2819 | 2864 | - |
| 55 | g8615.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 2901 | 3020 | - |
| 58 | g8615.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 2918 | 2941 | - |
| 43 | g8615.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 2946 | 2980 | - |
| 48 | g8615.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 2988 | 3020 | - |
| 38 | g8615.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 3058 | 3114 | - |
| 70 | g8615.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 3058 | 3214 | - |
| 59 | g8615.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 3136 | 3161 | - |
| 51 | g8615.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 3162 | 3176 | - |
| 37 | g8615.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 3177 | 3192 | - |
| 45 | g8615.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 3253 | 3278 | - |
| 74 | g8615.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 3254 | 3278 | - |
| 41 | g8615.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 3348 | 3393 | - |
| 34 | g8615.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 3444 | 3474 | - |
| 42 | g8615.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 3444 | 3522 | - |
| 73 | g8615.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 3489 | 3513 | - |
| 5 | g8615.t1 | PANTHER | PTHR46001 | TIAM (MAMMALIAN TUMOR INVASION AND METASTASIS FACTOR) HOMOLOG | 135 | 553 | 0.0 |
| 7 | g8615.t1 | PANTHER | PTHR46001:SF3 | PROTEIN STILL LIFE, ISOFORM SIF TYPE 1 | 135 | 553 | 0.0 |
| 6 | g8615.t1 | PANTHER | PTHR46001 | TIAM (MAMMALIAN TUMOR INVASION AND METASTASIS FACTOR) HOMOLOG | 955 | 3011 | 0.0 |
| 8 | g8615.t1 | PANTHER | PTHR46001:SF3 | PROTEIN STILL LIFE, ISOFORM SIF TYPE 1 | 955 | 3011 | 0.0 |
| 3 | g8615.t1 | Pfam | PF00169 | PH domain | 1877 | 1978 | 2.0E-12 |
| 2 | g8615.t1 | Pfam | PF18385 | T-lymphoma invasion and metastasis CC-Ex domain | 2006 | 2101 | 6.9E-11 |
| 4 | g8615.t1 | Pfam | PF02196 | Raf-like Ras-binding domain | 2149 | 2219 | 2.2E-14 |
| 1 | g8615.t1 | Pfam | PF00621 | RhoGEF domain | 2451 | 2639 | 1.7E-42 |
| 31 | g8615.t1 | ProSitePatterns | PS00741 | Dbl homology (DH) domain signature. | 2589 | 2614 | - |
| 77 | g8615.t1 | ProSiteProfiles | PS50229 | WH1 domain profile. | 88 | 206 | 21.154 |
| 79 | g8615.t1 | ProSiteProfiles | PS50003 | PH domain profile. | 1866 | 1979 | 11.281 |
| 75 | g8615.t1 | ProSiteProfiles | PS50898 | Ras-binding domain (RBD) profile. | 2145 | 2212 | 19.905 |
| 78 | g8615.t1 | ProSiteProfiles | PS50106 | PDZ domain profile. | 2228 | 2304 | 10.094 |
| 76 | g8615.t1 | ProSiteProfiles | PS50010 | Dbl homology (DH) domain profile. | 2447 | 2641 | 35.119 |
| 30 | g8615.t1 | SMART | SM00461 | WH1_2 | 98 | 203 | 1.7E-37 |
| 28 | g8615.t1 | SMART | SM00233 | PH_update | 1867 | 1981 | 1.6E-14 |
| 29 | g8615.t1 | SMART | SM00455 | RBD_5 | 2145 | 2212 | 1.8E-15 |
| 25 | g8615.t1 | SMART | SM00228 | pdz_new | 2238 | 2316 | 4.3E-5 |
| 26 | g8615.t1 | SMART | SM00325 | RhoGEF_3 | 2451 | 2640 | 1.9E-57 |
| 27 | g8615.t1 | SMART | SM00233 | PH_update | 2683 | 2806 | 0.14 |
| 11 | g8615.t1 | SUPERFAMILY | SSF50729 | PH domain-like | 94 | 205 | 1.14E-22 |
| 10 | g8615.t1 | SUPERFAMILY | SSF50729 | PH domain-like | 1869 | 1977 | 1.81E-17 |
| 12 | g8615.t1 | SUPERFAMILY | SSF50156 | PDZ domain-like | 2224 | 2314 | 1.86E-7 |
| 13 | g8615.t1 | SUPERFAMILY | SSF48065 | DBL homology domain (DH-domain) | 2445 | 2652 | 3.93E-51 |
| 9 | g8615.t1 | SUPERFAMILY | SSF50729 | PH domain-like | 2647 | 2810 | 4.98E-63 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0090630 | activation of GTPase activity | BP |
| GO:0007165 | signal transduction | BP |
| GO:0005515 | protein binding | MF |
| GO:0007264 | small GTPase mediated signal transduction | BP |
| GO:0035556 | intracellular signal transduction | BP |
| GO:0005085 | guanyl-nucleotide exchange factor activity | MF |
KEGG
Orthology
- This transcript has been annotated with K05731 (T-lymphoma invasion and metastasis-inducing protein 1)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
