General information for g8615.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Protein still life, isoforms C/SIF type 2.
Parent gene
- The parent gene g8615 is located on chr_2: 31808260..31839132 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8615 | g8615.t2 | isoform | g8615.t2 | 31796377 | 31839132 |
| chr_2 | g8615 | g8615.t2 | exon | g8615.t2.exon1 | 31796377 | 31796439 |
| chr_2 | g8615 | g8615.t2 | cds | g8615.t2.CDS1 | 31796377 | 31796439 |
| chr_2 | g8615 | g8615.t2 | exon | g8615.t2.exon2 | 31801895 | 31801988 |
| chr_2 | g8615 | g8615.t2 | cds | g8615.t2.CDS2 | 31801895 | 31801988 |
| chr_2 | g8615 | g8615.t2 | exon | g8615.t2.exon3 | 31802685 | 31802820 |
| chr_2 | g8615 | g8615.t2 | cds | g8615.t2.CDS3 | 31802685 | 31802820 |
| chr_2 | g8615 | g8615.t2 | exon | g8615.t2.exon4 | 31805042 | 31805226 |
| chr_2 | g8615 | g8615.t2 | cds | g8615.t2.CDS4 | 31805042 | 31805226 |
| chr_2 | g8615 | g8615.t2 | exon | g8615.t2.exon5 | 31805288 | 31805406 |
| chr_2 | g8615 | g8615.t2 | cds | g8615.t2.CDS5 | 31805288 | 31805406 |
| chr_2 | g8615 | g8615.t2 | exon | g8615.t2.exon6 | 31805649 | 31805982 |
| chr_2 | g8615 | g8615.t2 | cds | g8615.t2.CDS6 | 31805649 | 31805982 |
| chr_2 | g8615 | g8615.t2 | exon | g8615.t2.exon7 | 31806199 | 31806730 |
| chr_2 | g8615 | g8615.t2 | cds | g8615.t2.CDS7 | 31806199 | 31806730 |
| chr_2 | g8615 | g8615.t2 | exon | g8615.t2.exon8 | 31806799 | 31807184 |
| chr_2 | g8615 | g8615.t2 | cds | g8615.t2.CDS8 | 31806799 | 31807184 |
| chr_2 | g8615 | g8615.t2 | exon | g8615.t2.exon9 | 31807631 | 31807733 |
| chr_2 | g8615 | g8615.t2 | cds | g8615.t2.CDS9 | 31807631 | 31807733 |
| chr_2 | g8615 | g8615.t2 | exon | g8615.t2.exon10 | 31808260 | 31808337 |
| chr_2 | g8615 | g8615.t2 | cds | g8615.t2.CDS10 | 31808260 | 31808337 |
| chr_2 | g8615 | g8615.t2 | exon | g8615.t2.exon11 | 31808498 | 31808734 |
| chr_2 | g8615 | g8615.t2 | cds | g8615.t2.CDS11 | 31808498 | 31808734 |
| chr_2 | g8615 | g8615.t2 | exon | g8615.t2.exon12 | 31808970 | 31809099 |
| chr_2 | g8615 | g8615.t2 | cds | g8615.t2.CDS12 | 31808970 | 31809099 |
| chr_2 | g8615 | g8615.t2 | exon | g8615.t2.exon13 | 31826400 | 31829483 |
| chr_2 | g8615 | g8615.t2 | cds | g8615.t2.CDS13 | 31826400 | 31829483 |
| chr_2 | g8615 | g8615.t2 | exon | g8615.t2.exon14 | 31830867 | 31831012 |
| chr_2 | g8615 | g8615.t2 | cds | g8615.t2.CDS14 | 31830867 | 31831012 |
| chr_2 | g8615 | g8615.t2 | exon | g8615.t2.exon15 | 31831435 | 31831714 |
| chr_2 | g8615 | g8615.t2 | cds | g8615.t2.CDS15 | 31831435 | 31831714 |
| chr_2 | g8615 | g8615.t2 | exon | g8615.t2.exon16 | 31832636 | 31832767 |
| chr_2 | g8615 | g8615.t2 | cds | g8615.t2.CDS16 | 31832636 | 31832767 |
| chr_2 | g8615 | g8615.t2 | exon | g8615.t2.exon17 | 31833043 | 31833225 |
| chr_2 | g8615 | g8615.t2 | cds | g8615.t2.CDS17 | 31833043 | 31833225 |
| chr_2 | g8615 | g8615.t2 | exon | g8615.t2.exon18 | 31833285 | 31833485 |
| chr_2 | g8615 | g8615.t2 | cds | g8615.t2.CDS18 | 31833285 | 31833485 |
| chr_2 | g8615 | g8615.t2 | exon | g8615.t2.exon19 | 31833564 | 31833791 |
| chr_2 | g8615 | g8615.t2 | cds | g8615.t2.CDS19 | 31833564 | 31833791 |
| chr_2 | g8615 | g8615.t2 | exon | g8615.t2.exon20 | 31833856 | 31834042 |
| chr_2 | g8615 | g8615.t2 | cds | g8615.t2.CDS20 | 31833856 | 31834042 |
| chr_2 | g8615 | g8615.t2 | exon | g8615.t2.exon21 | 31834118 | 31834232 |
| chr_2 | g8615 | g8615.t2 | cds | g8615.t2.CDS21 | 31834118 | 31834232 |
| chr_2 | g8615 | g8615.t2 | exon | g8615.t2.exon22 | 31834300 | 31834451 |
| chr_2 | g8615 | g8615.t2 | cds | g8615.t2.CDS22 | 31834300 | 31834451 |
| chr_2 | g8615 | g8615.t2 | exon | g8615.t2.exon23 | 31834534 | 31834835 |
| chr_2 | g8615 | g8615.t2 | cds | g8615.t2.CDS23 | 31834534 | 31834835 |
| chr_2 | g8615 | g8615.t2 | exon | g8615.t2.exon24 | 31835151 | 31835345 |
| chr_2 | g8615 | g8615.t2 | cds | g8615.t2.CDS24 | 31835151 | 31835345 |
| chr_2 | g8615 | g8615.t2 | exon | g8615.t2.exon25 | 31835411 | 31835519 |
| chr_2 | g8615 | g8615.t2 | cds | g8615.t2.CDS25 | 31835411 | 31835519 |
| chr_2 | g8615 | g8615.t2 | exon | g8615.t2.exon26 | 31835676 | 31835993 |
| chr_2 | g8615 | g8615.t2 | cds | g8615.t2.CDS26 | 31835676 | 31835993 |
| chr_2 | g8615 | g8615.t2 | exon | g8615.t2.exon27 | 31836150 | 31836307 |
| chr_2 | g8615 | g8615.t2 | cds | g8615.t2.CDS27 | 31836150 | 31836307 |
| chr_2 | g8615 | g8615.t2 | exon | g8615.t2.exon28 | 31836367 | 31836988 |
| chr_2 | g8615 | g8615.t2 | cds | g8615.t2.CDS28 | 31836367 | 31836988 |
| chr_2 | g8615 | g8615.t2 | exon | g8615.t2.exon29 | 31837073 | 31837142 |
| chr_2 | g8615 | g8615.t2 | cds | g8615.t2.CDS29 | 31837073 | 31837142 |
| chr_2 | g8615 | g8615.t2 | exon | g8615.t2.exon30 | 31837233 | 31837336 |
| chr_2 | g8615 | g8615.t2 | cds | g8615.t2.CDS30 | 31837233 | 31837336 |
| chr_2 | g8615 | g8615.t2 | exon | g8615.t2.exon31 | 31837532 | 31839132 |
| chr_2 | g8615 | g8615.t2 | cds | g8615.t2.CDS31 | 31837532 | 31839132 |
| chr_2 | g8615 | g8615.t2 | TSS | g8615.t2 | NA | NA |
| chr_2 | g8615 | g8615.t2 | TTS | g8615.t2 | NA | NA |
Sequences
>g8615.t2 Gene=g8615 Length=10584
ATGGGAGCGAAAGGTAGTGTGGAAGCCGCAAAAATGAATGCAGATAACTGGGGTCATCTG
GAGCGCGGACGAAGTAGTCAGTACGGCGGCGGTTATCGTCACAATCAACGCTCACAATCA
TTAAATAGAGGACAGGCTCTTTCACGTGCAGAAGTCGGAGGACAATCGGGCTGCGCAAGT
TGTGCAATGGGAAACAAATTGAGCTGCTCGTGTGCGCCATTGATGCGTAAAGGTTATCGT
TATGAAGACTCACCGTGGCAAACATCTCGCCGTCGTGATGGGCATCTCCTGAGGTTGTGG
GCGGAAGTGTTTCATGTGGCTGCGAGTGGTGCTGGTCAAGTGAAATGGCAACAAGTGTCT
GAGGATCTCGTGCCAGTCAACATCACATGCATACAGGATTCACCAGAATGTGTGTTCCAT
ATTACTGCTTATAATAGTCAAGTGGATAAAATTCTTGATGTTCGACTTGTTCAACCTGGT
ACAAGAATTGGACAAGCATCAGAATGTTTCGTATATTGGAAAGATCCAATGACAAACGAT
ACCTGGGGTCTAAATTTTACATCACCAATTGATGCGAAACAATTTAGGGAGTGCTGTTCA
CCATCATTTAAATTCTCGCGCAAGGCATCATCAAGTTATTCACTAAAATTAGATCCACCT
GGAAAAGGCAAAGTGAAACCAAAACGTAAACCGTTAAGTACACCAGCAAGTCCATCACGA
GCACGTGAACCTCAATGTACTTGCATGACTGCTGAGCAATATGCTCGAATTAAAGCACAA
GATCCACGATATCGAGGCTCATCAACTTTACCTCGACCAACAACAAAAGCCACCGATACT
GATTTAATGCGATCAGAAAAGCCTGTCACAACAGCATCAACGACATCACTTTATGATAAT
GTAACATCAAGCAATCAAGGACAAGGACAAGAAACTTTACAACGTCAAAAATCAGACACG
AGCACAATGACAAATATTTGTACAGCATCGGTTGGCACGCAGCAAAATCATGTTGGTTTA
CAAATAAGTCAGGATGATGCAAGTGATAAGAATGCACAACGTGAAGAGACTTCAAAATCA
GAAGGTACACAAGCTGGTGGAACATTACAAAATCAAAAGACAGCAGTAAAAACTTCAATT
TCAACTGGAACGGGTACTCGCACTAAAGACTATAATGAGAATATTATGCATGAACATCAG
ATTACAAGTAGCAAACGTAACAAATCAAAGAGCACTGAAGATATGAATGTTGATGCTGGA
ACACTCAAAAAGATGCTTAAACCACTTCATAACAACGAGAGTCCAGTGACATCACCTGAA
ATGGGTAGACGTCGCTACAATTACTACAATGCAGCTACAAACACAGCACCACATGGACAT
CAACATATTATACATAATAATCATTTCAATCATAATTCTATGTCACGTCAATCAAGCCAA
TCTTCACGTTTTTCTGGATCTCGATCATCACATGAGATTGGACGTGGATATCAACCACCA
CGTGGACTATATCTGGAATTGGAAAAGGAACGTTGCGGACTGGAAGGATCACCACCATCA
GATAATGTAATGTTTGATAATCAATGTTATGCAACTACTCCAAGCTCAAGTAATGGAAAT
TCTGATCAGGAACCTGGCGGCTATGGATCGGGAACTGGTCGACCAAGACACCATTCGCAT
CCTCATCAGCAGCAGCCAAATGTGACGCCAACACCGGGTTCACCGACATCACGTCTTTTA
CTCGAATATGAAATGCATTTGCGCAACACGCTGGCCAAAGGAATGGATGCAGAATCATAT
AGTCTGCACACATTTGAAGCTCTATTATCACAAAGTATGGAAAATTTGGGATCATCCTCA
AGTGCCAAATCTTCTACCCTACCTTTACCACATCGCTTAAATGTCGAGCACTCTTACATA
CCTAAAGAACGTGAACGTGATGGATATTATAGTGACCGCAATGAATTAATTAGAGAAAGA
GAACGCGAACGTGAGCGTGAACGTGGTTATTTAAGTGACCACAATTCAAGTTATTCAACA
TCACGTTGCGCATCTTGCATTGGTGAATCTGCTCGTGCACAGTGGTTCCGTCATTCGGGT
GGCTGGCGCTCGGGTAGCTCAACACTTGGTTCGGGCACGAATTTGATCTCACAAAGCACA
ACTGGTCATCGACGTTCACCATGGGACTCATTGCCCTCGCTTAAACAGGATGGATCACTC
AATGACTCAGGCTATAAAAGCAATCGCGCTGACTCGTTTGAACAACGAGGTGTTTTTGAT
CGACAAGATAGCTTACGCTCAGATTATTTGAGTGATCGTGAAACTCGCTATGGAATTGTT
CAGCAAGCATCAATAGATAGCACTGATTCCCGTTTGTGTTATCTTACTTCATCTGAGCAA
ACAGCTTCAACTGCATCATCAAATAATAATAGTGAATCAAACGATAAAAATAAATCACTA
ACACTCGATTGTTGTTGCGTCGTCGTTCAAATTACCCCTGGGGCAACGGGCAAAGGATCG
CAACAATCCGCAACTGTAGGCGATGGATCGAAAAAACATGGCGATGGGCTAAGTAGTCGT
GCGAATGGCGCGGCACCAATTTGTCGTTGCAGCAGTGCCGTTGCCAATCATATTTCGTCA
CGATCAGATGATGCTGCTGCTTCCACTTCTTCAAATATTCCTGGTGGTGCAACAACTTCT
ACGCCATCAACGAGTCATAAATCCATGATGATGACTGGACAATCATTTGGTGCCAAAAGT
AGATCCGGTTCACTCGATCAACTGCTTTTCCTGACAGATCAACTCGCTGCACATACATTG
CAGAGACAGGAAAACAGACATACGGGCCGTAGAGAAATTACAGCCGATGATTTATTTAAT
TATCTAAAAGACATCAATGGCGATCTTAAGTTTGTAGATAAAAAACGTTTAGCTCAATTA
TTGTTACAAAATACTGAAGAAATGGTTGCACAACAACATCAATTACAACAGCAGCAGCAT
CAGCAAAGTGTCACTGGTACCATACGAAAGCATACGCCAGTTAGTCGACAAGAATCTGGT
GGAGAGAAGCAGATTCATTTTGTCAATAATATCGGTCCAACACCACCGCCTACGAATCCA
ATCGATGCTCCAACAAAAAGCATTCTTCAAACATCGCGCAAGTCTAAATTTAGTAGTGGA
AATAAAGTTGAAATGCTTGATATTGCACAGCAGCAAAAAGAATTTAGTGATGAATGGCTT
AATCGTTCTCATTCACAACGCATTTCATCGCGTTCTGTTGAAGTGTCTTCCACAATGCCA
AAACCAGATCAAATTCAATCTAGCAAAAAGCATCATAAACATCATCAGCGGCATTTTTCT
GGTCCTGAAGATCTTGAAGCACTAAAAAAGGACATTGCACATTGGCTTGAACGACATCCA
TATAAGAAAGATGCTGCATTACTTGACCTTATTGAAACTGCTGCTAGACTTAAACATGAA
AAACATCAACATCCACAACAAGGCATAATGAAGCCAAAAACACTAATTAAAAATGAATTT
GCTGACATTATTCGTCCACCTTTGCCACAAAAGCAAAGATCACAGCAGCAGCAACAGCCT
CCTCCACTTCCAATGAAACAATTTCAACGACAAAAGTCAGCCGATGACCTGCGTGTCCTT
AAAAATAACATATTAGAATGGTTAACAAAACAACAGATTATGAATCAACAAAGGTTACAA
TTACAACAGCAACAAATGGTGCCATTGAAAAGTGCCATAGTAGAGTCAAAAGCAGGTGAG
TCAGTCAAGTCACAGACGACAACTGCACCACCGCCATTGCCCCGTAAAACGCACCAGAAG
TTGCATAAACGTCATTCATTAGGTCCAAGTGATGAATCATCAGATTTTCATGAAATTCCA
CTTGATTGGATTCAAATTCCAATTGAAAAACTTAATAAAATGCGTGAAGTTCAAAAGAGT
TGTGCTGAAATTAGTCGTAAAGGAAGTGGCAAAGAACAAAAGTCCACACTTCCATCATCG
CATGAGCGAGCACATCATAGATCCGTTGAACGTAGGTTACGTCATTCAGCAAGTGAAGTA
GTTCAATCGAATGTAGATAGAAGTCATAAGATAATGCAACAGCAGCAACCGCCAAGTCAA
GTTCAATATCAATTAATTCAACATTCACAACAAATGCCTATGCAAGCTTCTTCTTCTCAG
CAGCAACAACAGCAAATTCAGCAGCAGCCACAATATCAAATAGTTCAACGCTATCGCGAA
CCAACGAGAGTAGTAGCAGAACGTCATCATAGTCATGATCATCATAATGGCCATCATTCG
AGTGGTGAACAAAGAACATCGAAAAGGGATAAGCCCGCTAGGCATCATCGACAGACACAA
CGTTCTGCAACGACAAGTAATATGTTGCCAGGTCGACAACCAAGTAGTAGTAGTCATGGA
GGTGGCAGCAGTTCGCATCATAGCGTTGGAAGTGATCTTAAGGCAATTTATCAGTCAACA
ACTTCGCTTGTGCGTTGCGATGACCCTATGTGTCCACTGTTGCCTATTTGTACGGATCCA
AACTGTTATTTGAATGCCAATTCACACTACGATACGCCACGACGTGCCTCATTACCACCG
CGTTCAAATGAGATGCTACAGGATAGCGATATCTGTACAGATCCGCGTTGTTGCGAGTCG
CTTCCAATATGTACAGATCCTCGTTGCTGTGGCACGATTGCTCGCTCAAAATCAAAAGCC
GCCATTGGCGTCAGTGCCCATCACAAATTCAAAAGCAATTCACTGCCGCGTTGCGTTGAA
TCACAATCAACAAGACGCTCCGATCTCTTTTTATCGGGTTTATCAAAAGACGAATCGTAC
TCGTCACTCCCTAAATCTGCGACACTCTCGTCTGCCACTGCTCAAGCATCATCTGCACAT
AATAAGCCTATTACTGCTACTAACATAACTACAACAACTACTGCTAGTCATAGTAATAAT
AAAATAAATAATATTAATCATAGTCATAGTAAAACACGTGCACATCGCAATGGTAATAAT
AAGCTCATGAAATCGGCCTCGGCTGCGTCACTTAATTCACGCCGTCGTCGTCATAAGACA
GTTCATTTTGGCGAAAATTTGCTTCGCGAAGTTTGTCAAAATCGTCAGCTTATTAAACCG
TTAACAGATCAGCCGTCCAATTCGTCGTCGACATTGCAGCCAAATATTCAAATGTTATAT
AATTTTGTAGAGGGTGTATTGAGTGCCTGGGTAGATGAAGAGGATGACGATAATATCAAA
TCGGGTCCCGATTCAGAACCTGAACGGGGTGCTATTTTAAAGCCCATGCATCGATGCAAT
AGGGCACGCTTACAAACAATTCGTCGTGTAGTTAATGAAGCGGCTGCTCTTAAAGGCACT
CTTAAACTTGGCAACTCACGCTATCGCCATCGACATTGGCGTGGCACAGCAAAAGACTGT
AATGAGCGATTTCTTCGGAAGATCAGCGACGATGATCGAATGAGTTTAACGACCGCAATA
TCTGATGAGGATGACGGTGAAAGCATCATGGCATCACCATATAAGGCAAAAGCACAGGGT
ACAGCTTCAGCTTCATTTAATTGCACGGGTGCTGTACGAAAGGCAGGCTTTTTATCAGTT
AAAAAATGGCTATTGCGCAAAAAGCATCAAATTGAATTGGCTCGTAAACGCGGCTGGAAG
GGTTATTGGGTCTGTTTAAAAGGAACAACGTTGCTCTTCTATCCATGTGATTCGCGTGAG
GGACGTTCAGTTGAAGCAGCACCAAAGCACTTAATCATAGTCGATGGCGCAATCATGCAG
CCAATCCCCGAGCATCCCAAACGTGATTACATATTTTGCCTTAGCACCGCGTTCGGAGAT
GCTTATTTGTTTCAAGCGCCATGTCAAGTGGAATTGGAAAATTGGGTCAACAGCATTCAT
TCAGCTTGTGCTGCAGCATTCGCACGTCATCGTGGCAAAACTGGAACATTGCATTTACTA
CAAGAAGAAATTTTCCGTTTGGATAAAGCAATTGAATCGGATCACAAGCTGAAACATATG
GCTGATTTACAATCGAGTGTCGTCACCGACCAAGATACTAGAATTCAAATTCAACAGCAG
ATTATTACATGGGAGGAAAATTTGGAACGCTTACATTGTGAGCAGTTCCGTTTGCGTTGT
TACATGGCTTCCTTACAATGTGGTGAATTACCAAATCCTAAATCATTGCTCACTCACGTC
TCACGCCCTACAAAAAATACACTCAATAAGTTGGGCGTCTTTACGGTTTCATCATTCCAT
GCATTCATTTGTGCTCGTTCACCATCGCTTTTGAACAATTTGCTCGCAGGTCGCGGTGCC
ACTAAACGTCGTCCACCGCTGTTATCACGTTCAAATAGCGGATCTAGTCGTCGCTCTATG
CAGATGAGCTCCCGTGATGATTCAGAAAAAAGTTATAACGTTCCACTACCAGATAATAGC
TATGTTACGGTATATTTACGTGAGAGTATGACAGTCGAAGAATTCTTGGCAACTGCATGT
GTTAGAAAAAATCTTAATCCAATGGAACATTTTGTTCGTGTTAAGAAACGACGTGAAATG
GAAGATCATAATTACTTTGTACCGCATCGAAATGATTTAATTGAAACTTATTTGCATACA
CATGAAATAGTCGAAGTTTGTGCAAAAATTTTATATCAAGTTGAACTTCAACGTTCAACA
TTAGAACAAATGTGGGGCTTCTCGGTCGAAGCTGAGCTAATTGAGAATGCCGATCGTCAA
GATGAATTATGTTGTTATGTTAGTCGTGTTGAGGATAAAAGTGTCGCTCTACAAAACGGT
ATTATTAAGGGAGATGAAATTATTGTTATCAATGGTGCCATTGTGTCCGATTTGGATATG
ATGTATTTAGAGAGTGTTTTGCAAGAAGAGCAAGCGTTATGCATGATGATGAGATCATCA
CGAGTTGAACCACCAGATCTTACATGCATATTGCGTTCAACTGATGATATAATCGAATCT
TTGGTATGTCCACCTCCACCAACTGATCCAGGCATGATGAGTGAAGAAATGATTACTGGA
TTAATTGTTCCTGCACCTAATTGGAAACGACCTGGCGTTGAACATCACGATTCTGTGACA
TCAGATCAGCAGCTCATTGACAGCAGTCGCCAAAAGGTGCAATCACGCACGAGTAGCTTT
GAGATAGAAAATTTGCTAAAGACGGCTGAGCAAGTGACAACATATTGCCGTTCACCGCAA
GAGACACGCAAATCGAGTCCCACTGGTTCTGTAACATCATCGGCAGCATCGAACGCAGTC
CTGACTCCATCACGTCAATTAACTGACGCAGAAAAATTGCGAAAAGTCATCTTGGAATTA
GTTGATACGGAACGAGCTTATGTTAAGCATTTGAACAATCTTCTTGAGCACTACTTGGAG
CCATTGAAACGTGAAACTTTCCTCTCCAATGCTGAAATAACGGCTTTATTTGGTAACATT
CAGGAAATTGTCACATTCCAGCGTCAATTTTTACAAAATTTAGAAGAAGCCTTAGAGATA
GAGCCCGATTTCCACAGATTCGATCATTCTAGCCAATTCAGAAATGTTCTTTTTGCTATT
GGATCTGCATTTTTATACTACGTTAATCATTTCAAATTGTACTCTTCATTCTGTGCAAGT
CATAGTAAGGCACAGAAAGTTTTACATCCAAATGAAGGCAATCAAGCATTACAGGAATTT
TTACTCTCTAAAAATCCAAGACAAGAACATAGCAGCACATTAGAATCATATCTCATAAAA
CCAATACAAAGAATTTTAAAATATCCCTTGTTGCTGCAGCAGTTGAAAAATCTAACTGAT
CCTTATGCAGAAGAGCATCAACATCTTATTGAAGCTTTAAAAGGAATGGAAAAAGTTGCA
GAACATATTAATGAAATGCAGCGAATTCATGAAGAATATGGTGCAATATTTGATCATCTT
TTTAGACAGCATCAAAAGTCTTGCAAACAACCAATTGATCTTAGTCCAGGTGACTTGCTA
TATTATGGTGGAGTCGAATGGCTCAACATTTCGGACTTCCTTGGTAAAATTAAAAAGGGA
TTAGAATTGCATGCCATGTGCTTTGTCTTCAAATCAGCAGTTGTCTTCCTATGTAAAGAG
CGTCTTCGTCAAAAGAAAAAATTAATGGGCGTATCAAATAAAAATGCTCCCAATGAGGTT
GAAATTATTCGCTATCAAGTTCTAATTCCGGTCACTGAAGTGCAAGTTCGTGCGTCCTCG
GCAAAGGACATGGATTCGCATTTCCTTTGGGAATTAATTCATTTACGTTCGCAACTACAA
CGACGCTCAGAAAAGGTCTATGTTTTATCAAATAGTACAGCTGACTTCCGAAATGCATTC
CTTAAAACAATTCGTCAAATCATTCGTGAAAGTGTTCGTAATATGTCGATTCCAATTAAA
GAACGTGGCAGTATCAGTTCAGTTTCTTCTGCTGGCGGTGGTCCACACTTTTCTGGCAAT
TCACAAACATTAGAGCGACCAAAGCAGACATCGAGCATTCAGCAAGGCTCACAGACTCTT
GGAAAGCCAAAGAAAAAGAATAATCAACGACTTAGTGCTGGTAATATCGATTATGACAAT
CTTCATGGTAGTTCACAAGAGCACGACTATGGTATGGAACAAGAAGAGGCACCACCAATC
TTTAGAATCCGCAGTAAAACTGTTGGTGATGATGGCGGACCACCACCCGTCCCAAAAAGA
ACGACATCAGAATTGACTACAGAAAAAGATCCGGGTATAAAATCAGAAGGTGAAGATGAA
TCTCTTATGGGTCATAGATCGAAATCTTTGGGCCGAACACCTAATCATTTAACTTTAAGC
ACGACATCAACGCTCTCGGTTGGAAGTACTGGTAGCCAAGCGCGTTTGATTCAATCTTCT
CACGCGCCATCGCATTATCAGCCTGTTTTAATGAAAGATTTAGGTAAGACATCTTCAACC
GATTCGGGAGAATCGATAAGTTTTCACACAGAAAAATCATCAGACTCAACCTCGGGCGTT
GACGTTAATGATGATAACTATCAGTTGACGGACGAGATTGTTGATAAGCATTTGGATGAT
TTGAAAAAGGAATGTTTGTCATATGAGACACGTGATGTGGCAAAGTTCATGGAAAAGCTT
AAGACGCAATCGGAATCTTTGGATGGCGGTGATGGCAGTCAAGATGAGAAGAAGGCCGAG
ATTGTTGCATTGGAAAAGAAATCAGCTCGTCGTGAGTCAGAATCAAGAAAAGAATTGGAA
ATAATGATGAAGCAAAAAGAAGAAAAAGGAAAACGAGACTCAACTTCATCAATTAAATCG
CATAGAAAATCTTCATCATCATCACCGACATTGAGAAAACCAAAAACCATCGATATGGAT
GCGACTTCACATTTGTCACCTACAAGACAACAAATTGACAGCAGTCAGGTACAAATTATT
AAGATAAAATCGCCAAGTGGCAGTCGTAGACCATCACGTGAAGCATCGCGTAATAATTCA
GTTGAACGTTCACCCTCAAGGGAAATGCAACAACAGCAAACATTAAAGAAACCTGAAGGT
GGTATTTTAAAGAAACCATCACCTAAATTTGGCAAAGCGAGTGAATATAAATTGTCAAAT
AGTTTAAGACCAGACAGTTTCATCAGTCCATTTAGCAGCTTTGAATCTAAAAGCGACAAA
CTTTCACCATCATCTGAAATATTGCCAACATTCTGTGCAAAAGAAGCACAAAAGCGTGCT
TCATTATCTGACTATGAAAGAGATCCACAAGACTATCATCATCAGGCAATGAAATCGAGA
TCTTTAGAAAGCAGCTTGGAGCATTTAAAATCAGCATTGAAGCATCAAAGCAGCTATGAA
CAGCAACAACCATATTGTTTGTCACCAATGCATGATCCAAATCGATACTATAACTTGTCA
GCTCAACATTCAATTGAATCAAATCGATCACCAGTTCGTTATTGTTCACCAGTTCCACCA
CATTATTATAATGAACCATTTTATGAATATCCAAGACATAAAGCAAGACAACGTGAATCT
CGTTCACTTGAACGACCTGATTTTTCACGTCAAAGTTCATCAGAATATGAAAGATATTAT
GAGGAACCACCACCTTATTCTCATCATCATGATGAACAACGTACAAGACGTCATAGTGTC
TATGAACATCGTTCAATTCCCTATCATTACTATTCAATGTCACCCGATGACTATCTTATG
TCGGCCTCTTCTCATTACGAACAACCATCAGCTTGTGTCGATTGCTATTATCAAACGTAT
CGACAACCATCGCATTTGCATCACTATACACAACAACCACCGCCCTTACCAAAGCGCAAT
TCATCATCATCATCACAACAGCAGCAGCAACAATCTAAAAGTCCATCGCAATCACGTCAA
CGTCAATCGCGGTCTCGTAAAAAACTCTCGCGTCGAATGTCTTCCAATTATTTCAATAAA
TCCTTTGACGATGATGAAAATATGAATAGCAGCGGCACTTCATCCAACAAGCCAATGCAC
GATAATGAAGAGATTCGTGTTTAA
>g8615.t2 Gene=g8615 Length=3527
MGAKGSVEAAKMNADNWGHLERGRSSQYGGGYRHNQRSQSLNRGQALSRAEVGGQSGCAS
CAMGNKLSCSCAPLMRKGYRYEDSPWQTSRRRDGHLLRLWAEVFHVAASGAGQVKWQQVS
EDLVPVNITCIQDSPECVFHITAYNSQVDKILDVRLVQPGTRIGQASECFVYWKDPMTND
TWGLNFTSPIDAKQFRECCSPSFKFSRKASSSYSLKLDPPGKGKVKPKRKPLSTPASPSR
AREPQCTCMTAEQYARIKAQDPRYRGSSTLPRPTTKATDTDLMRSEKPVTTASTTSLYDN
VTSSNQGQGQETLQRQKSDTSTMTNICTASVGTQQNHVGLQISQDDASDKNAQREETSKS
EGTQAGGTLQNQKTAVKTSISTGTGTRTKDYNENIMHEHQITSSKRNKSKSTEDMNVDAG
TLKKMLKPLHNNESPVTSPEMGRRRYNYYNAATNTAPHGHQHIIHNNHFNHNSMSRQSSQ
SSRFSGSRSSHEIGRGYQPPRGLYLELEKERCGLEGSPPSDNVMFDNQCYATTPSSSNGN
SDQEPGGYGSGTGRPRHHSHPHQQQPNVTPTPGSPTSRLLLEYEMHLRNTLAKGMDAESY
SLHTFEALLSQSMENLGSSSSAKSSTLPLPHRLNVEHSYIPKERERDGYYSDRNELIRER
ERERERERGYLSDHNSSYSTSRCASCIGESARAQWFRHSGGWRSGSSTLGSGTNLISQST
TGHRRSPWDSLPSLKQDGSLNDSGYKSNRADSFEQRGVFDRQDSLRSDYLSDRETRYGIV
QQASIDSTDSRLCYLTSSEQTASTASSNNNSESNDKNKSLTLDCCCVVVQITPGATGKGS
QQSATVGDGSKKHGDGLSSRANGAAPICRCSSAVANHISSRSDDAAASTSSNIPGGATTS
TPSTSHKSMMMTGQSFGAKSRSGSLDQLLFLTDQLAAHTLQRQENRHTGRREITADDLFN
YLKDINGDLKFVDKKRLAQLLLQNTEEMVAQQHQLQQQQHQQSVTGTIRKHTPVSRQESG
GEKQIHFVNNIGPTPPPTNPIDAPTKSILQTSRKSKFSSGNKVEMLDIAQQQKEFSDEWL
NRSHSQRISSRSVEVSSTMPKPDQIQSSKKHHKHHQRHFSGPEDLEALKKDIAHWLERHP
YKKDAALLDLIETAARLKHEKHQHPQQGIMKPKTLIKNEFADIIRPPLPQKQRSQQQQQP
PPLPMKQFQRQKSADDLRVLKNNILEWLTKQQIMNQQRLQLQQQQMVPLKSAIVESKAGE
SVKSQTTTAPPPLPRKTHQKLHKRHSLGPSDESSDFHEIPLDWIQIPIEKLNKMREVQKS
CAEISRKGSGKEQKSTLPSSHERAHHRSVERRLRHSASEVVQSNVDRSHKIMQQQQPPSQ
VQYQLIQHSQQMPMQASSSQQQQQQIQQQPQYQIVQRYREPTRVVAERHHSHDHHNGHHS
SGEQRTSKRDKPARHHRQTQRSATTSNMLPGRQPSSSSHGGGSSSHHSVGSDLKAIYQST
TSLVRCDDPMCPLLPICTDPNCYLNANSHYDTPRRASLPPRSNEMLQDSDICTDPRCCES
LPICTDPRCCGTIARSKSKAAIGVSAHHKFKSNSLPRCVESQSTRRSDLFLSGLSKDESY
SSLPKSATLSSATAQASSAHNKPITATNITTTTTASHSNNKINNINHSHSKTRAHRNGNN
KLMKSASAASLNSRRRRHKTVHFGENLLREVCQNRQLIKPLTDQPSNSSSTLQPNIQMLY
NFVEGVLSAWVDEEDDDNIKSGPDSEPERGAILKPMHRCNRARLQTIRRVVNEAAALKGT
LKLGNSRYRHRHWRGTAKDCNERFLRKISDDDRMSLTTAISDEDDGESIMASPYKAKAQG
TASASFNCTGAVRKAGFLSVKKWLLRKKHQIELARKRGWKGYWVCLKGTTLLFYPCDSRE
GRSVEAAPKHLIIVDGAIMQPIPEHPKRDYIFCLSTAFGDAYLFQAPCQVELENWVNSIH
SACAAAFARHRGKTGTLHLLQEEIFRLDKAIESDHKLKHMADLQSSVVTDQDTRIQIQQQ
IITWEENLERLHCEQFRLRCYMASLQCGELPNPKSLLTHVSRPTKNTLNKLGVFTVSSFH
AFICARSPSLLNNLLAGRGATKRRPPLLSRSNSGSSRRSMQMSSRDDSEKSYNVPLPDNS
YVTVYLRESMTVEEFLATACVRKNLNPMEHFVRVKKRREMEDHNYFVPHRNDLIETYLHT
HEIVEVCAKILYQVELQRSTLEQMWGFSVEAELIENADRQDELCCYVSRVEDKSVALQNG
IIKGDEIIVINGAIVSDLDMMYLESVLQEEQALCMMMRSSRVEPPDLTCILRSTDDIIES
LVCPPPPTDPGMMSEEMITGLIVPAPNWKRPGVEHHDSVTSDQQLIDSSRQKVQSRTSSF
EIENLLKTAEQVTTYCRSPQETRKSSPTGSVTSSAASNAVLTPSRQLTDAEKLRKVILEL
VDTERAYVKHLNNLLEHYLEPLKRETFLSNAEITALFGNIQEIVTFQRQFLQNLEEALEI
EPDFHRFDHSSQFRNVLFAIGSAFLYYVNHFKLYSSFCASHSKAQKVLHPNEGNQALQEF
LLSKNPRQEHSSTLESYLIKPIQRILKYPLLLQQLKNLTDPYAEEHQHLIEALKGMEKVA
EHINEMQRIHEEYGAIFDHLFRQHQKSCKQPIDLSPGDLLYYGGVEWLNISDFLGKIKKG
LELHAMCFVFKSAVVFLCKERLRQKKKLMGVSNKNAPNEVEIIRYQVLIPVTEVQVRASS
AKDMDSHFLWELIHLRSQLQRRSEKVYVLSNSTADFRNAFLKTIRQIIRESVRNMSIPIK
ERGSISSVSSAGGGPHFSGNSQTLERPKQTSSIQQGSQTLGKPKKKNNQRLSAGNIDYDN
LHGSSQEHDYGMEQEEAPPIFRIRSKTVGDDGGPPPVPKRTTSELTTEKDPGIKSEGEDE
SLMGHRSKSLGRTPNHLTLSTTSTLSVGSTGSQARLIQSSHAPSHYQPVLMKDLGKTSST
DSGESISFHTEKSSDSTSGVDVNDDNYQLTDEIVDKHLDDLKKECLSYETRDVAKFMEKL
KTQSESLDGGDGSQDEKKAEIVALEKKSARRESESRKELEIMMKQKEEKGKRDSTSSIKS
HRKSSSSSPTLRKPKTIDMDATSHLSPTRQQIDSSQVQIIKIKSPSGSRRPSREASRNNS
VERSPSREMQQQQTLKKPEGGILKKPSPKFGKASEYKLSNSLRPDSFISPFSSFESKSDK
LSPSSEILPTFCAKEAQKRASLSDYERDPQDYHHQAMKSRSLESSLEHLKSALKHQSSYE
QQQPYCLSPMHDPNRYYNLSAQHSIESNRSPVRYCSPVPPHYYNEPFYEYPRHKARQRES
RSLERPDFSRQSSSEYERYYEEPPPYSHHHDEQRTRRHSVYEHRSIPYHYYSMSPDDYLM
SASSHYEQPSACVDCYYQTYRQPSHLHHYTQQPPPLPKRNSSSSSQQQQQQSKSPSQSRQ
RQSRSRKKLSRRMSSNYFNKSFDDDENMNSSGTSSNKPMHDNEEIRV
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 23 | g8615.t2 | CDD | cd01230 | PH1_Tiam1_2 | 1870 | 1995 | 1.13815E-79 |
| 24 | g8615.t2 | CDD | cd00992 | PDZ_signaling | 2231 | 2309 | 4.76296E-7 |
| 22 | g8615.t2 | CDD | cd00160 | RhoGEF | 2453 | 2644 | 3.28871E-54 |
| 21 | g8615.t2 | CDD | cd01255 | PH2_Tiam1_2 | 2647 | 2818 | 7.02546E-96 |
| 20 | g8615.t2 | Coils | Coil | Coil | 3089 | 3109 | - |
| 19 | g8615.t2 | Coils | Coil | Coil | 3527 | 3527 | - |
| 16 | g8615.t2 | Gene3D | G3DSA:2.30.29.30 | - | 91 | 208 | 8.0E-19 |
| 15 | g8615.t2 | Gene3D | G3DSA:2.30.29.30 | - | 1867 | 1993 | 8.7E-32 |
| 18 | g8615.t2 | Gene3D | G3DSA:2.30.42.10 | - | 2226 | 2321 | 1.5E-7 |
| 17 | g8615.t2 | Gene3D | G3DSA:1.20.900.10 | - | 2443 | 2645 | 2.7E-70 |
| 14 | g8615.t2 | Gene3D | G3DSA:2.30.29.30 | - | 2647 | 2809 | 4.3E-70 |
| 33 | g8615.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 214 | 321 | - |
| 64 | g8615.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 267 | 321 | - |
| 37 | g8615.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 342 | 385 | - |
| 59 | g8615.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 358 | 385 | - |
| 47 | g8615.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 472 | 492 | - |
| 61 | g8615.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 472 | 501 | - |
| 35 | g8615.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 533 | 574 | - |
| 55 | g8615.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 533 | 547 | - |
| 57 | g8615.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 709 | 750 | - |
| 66 | g8615.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 709 | 758 | - |
| 68 | g8615.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 837 | 858 | - |
| 51 | g8615.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 885 | 908 | - |
| 52 | g8615.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1077 | 1121 | - |
| 69 | g8615.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1082 | 1104 | - |
| 40 | g8615.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1189 | 1211 | - |
| 60 | g8615.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1189 | 1206 | - |
| 36 | g8615.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1257 | 1294 | - |
| 73 | g8615.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1258 | 1273 | - |
| 49 | g8615.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1322 | 1412 | - |
| 74 | g8615.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1322 | 1357 | - |
| 34 | g8615.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1358 | 1412 | - |
| 48 | g8615.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1426 | 1490 | - |
| 62 | g8615.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1426 | 1449 | - |
| 70 | g8615.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1459 | 1490 | - |
| 44 | g8615.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 2122 | 2151 | - |
| 41 | g8615.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 2126 | 2151 | - |
| 39 | g8615.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 2416 | 2438 | - |
| 45 | g8615.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 2824 | 2869 | - |
| 53 | g8615.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 2906 | 3025 | - |
| 65 | g8615.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 2923 | 2946 | - |
| 56 | g8615.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 2951 | 2985 | - |
| 72 | g8615.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 2993 | 3025 | - |
| 54 | g8615.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 3063 | 3119 | - |
| 63 | g8615.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 3063 | 3219 | - |
| 46 | g8615.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 3141 | 3166 | - |
| 32 | g8615.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 3167 | 3181 | - |
| 43 | g8615.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 3182 | 3197 | - |
| 50 | g8615.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 3258 | 3306 | - |
| 42 | g8615.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 3259 | 3294 | - |
| 71 | g8615.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 3353 | 3398 | - |
| 38 | g8615.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 3449 | 3479 | - |
| 67 | g8615.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 3449 | 3527 | - |
| 58 | g8615.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 3494 | 3518 | - |
| 6 | g8615.t2 | PANTHER | PTHR46001 | TIAM (MAMMALIAN TUMOR INVASION AND METASTASIS FACTOR) HOMOLOG | 135 | 615 | 0.0 |
| 8 | g8615.t2 | PANTHER | PTHR46001:SF3 | PROTEIN STILL LIFE, ISOFORM SIF TYPE 1 | 135 | 615 | 0.0 |
| 5 | g8615.t2 | PANTHER | PTHR46001 | TIAM (MAMMALIAN TUMOR INVASION AND METASTASIS FACTOR) HOMOLOG | 964 | 3016 | 0.0 |
| 7 | g8615.t2 | PANTHER | PTHR46001:SF3 | PROTEIN STILL LIFE, ISOFORM SIF TYPE 1 | 964 | 3016 | 0.0 |
| 3 | g8615.t2 | Pfam | PF00169 | PH domain | 1882 | 1983 | 2.0E-12 |
| 2 | g8615.t2 | Pfam | PF18385 | T-lymphoma invasion and metastasis CC-Ex domain | 2011 | 2106 | 6.9E-11 |
| 4 | g8615.t2 | Pfam | PF02196 | Raf-like Ras-binding domain | 2154 | 2224 | 2.2E-14 |
| 1 | g8615.t2 | Pfam | PF00621 | RhoGEF domain | 2456 | 2644 | 1.7E-42 |
| 31 | g8615.t2 | ProSitePatterns | PS00741 | Dbl homology (DH) domain signature. | 2594 | 2619 | - |
| 77 | g8615.t2 | ProSiteProfiles | PS50229 | WH1 domain profile. | 88 | 206 | 21.154 |
| 79 | g8615.t2 | ProSiteProfiles | PS50003 | PH domain profile. | 1871 | 1984 | 11.281 |
| 75 | g8615.t2 | ProSiteProfiles | PS50898 | Ras-binding domain (RBD) profile. | 2150 | 2217 | 19.905 |
| 78 | g8615.t2 | ProSiteProfiles | PS50106 | PDZ domain profile. | 2233 | 2309 | 10.094 |
| 76 | g8615.t2 | ProSiteProfiles | PS50010 | Dbl homology (DH) domain profile. | 2452 | 2646 | 35.119 |
| 30 | g8615.t2 | SMART | SM00461 | WH1_2 | 98 | 203 | 1.7E-37 |
| 27 | g8615.t2 | SMART | SM00233 | PH_update | 1872 | 1986 | 1.6E-14 |
| 29 | g8615.t2 | SMART | SM00455 | RBD_5 | 2150 | 2217 | 1.8E-15 |
| 25 | g8615.t2 | SMART | SM00228 | pdz_new | 2243 | 2321 | 4.3E-5 |
| 26 | g8615.t2 | SMART | SM00325 | RhoGEF_3 | 2456 | 2645 | 1.9E-57 |
| 28 | g8615.t2 | SMART | SM00233 | PH_update | 2688 | 2811 | 0.14 |
| 10 | g8615.t2 | SUPERFAMILY | SSF50729 | PH domain-like | 94 | 205 | 1.14E-22 |
| 9 | g8615.t2 | SUPERFAMILY | SSF50729 | PH domain-like | 1874 | 1982 | 1.81E-17 |
| 12 | g8615.t2 | SUPERFAMILY | SSF50156 | PDZ domain-like | 2229 | 2319 | 1.86E-7 |
| 13 | g8615.t2 | SUPERFAMILY | SSF48065 | DBL homology domain (DH-domain) | 2450 | 2657 | 3.93E-51 |
| 11 | g8615.t2 | SUPERFAMILY | SSF50729 | PH domain-like | 2652 | 2815 | 4.98E-63 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0090630 | activation of GTPase activity | BP |
| GO:0007165 | signal transduction | BP |
| GO:0005515 | protein binding | MF |
| GO:0007264 | small GTPase mediated signal transduction | BP |
| GO:0035556 | intracellular signal transduction | BP |
| GO:0005085 | guanyl-nucleotide exchange factor activity | MF |
KEGG
Orthology
- This transcript has been annotated with K05731 (T-lymphoma invasion and metastasis-inducing protein 1)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed