General information for g8615.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Protein still life, isoforms C/SIF type 2.
Parent gene
- The parent gene g8615 is located on chr_2: 31808260..31839132 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8615 | g8615.t3 | isoform | g8615.t3 | 31796377 | 31839132 |
| chr_2 | g8615 | g8615.t3 | exon | g8615.t3.exon1 | 31796377 | 31796439 |
| chr_2 | g8615 | g8615.t3 | cds | g8615.t3.CDS1 | 31796377 | 31796439 |
| chr_2 | g8615 | g8615.t3 | exon | g8615.t3.exon2 | 31801895 | 31801988 |
| chr_2 | g8615 | g8615.t3 | cds | g8615.t3.CDS2 | 31801895 | 31801988 |
| chr_2 | g8615 | g8615.t3 | exon | g8615.t3.exon3 | 31802685 | 31802820 |
| chr_2 | g8615 | g8615.t3 | cds | g8615.t3.CDS3 | 31802685 | 31802820 |
| chr_2 | g8615 | g8615.t3 | exon | g8615.t3.exon4 | 31805042 | 31805226 |
| chr_2 | g8615 | g8615.t3 | cds | g8615.t3.CDS4 | 31805042 | 31805226 |
| chr_2 | g8615 | g8615.t3 | exon | g8615.t3.exon5 | 31805288 | 31805406 |
| chr_2 | g8615 | g8615.t3 | cds | g8615.t3.CDS5 | 31805288 | 31805406 |
| chr_2 | g8615 | g8615.t3 | exon | g8615.t3.exon6 | 31805649 | 31805982 |
| chr_2 | g8615 | g8615.t3 | cds | g8615.t3.CDS6 | 31805649 | 31805982 |
| chr_2 | g8615 | g8615.t3 | exon | g8615.t3.exon7 | 31806199 | 31806730 |
| chr_2 | g8615 | g8615.t3 | cds | g8615.t3.CDS7 | 31806199 | 31806730 |
| chr_2 | g8615 | g8615.t3 | exon | g8615.t3.exon8 | 31806796 | 31807184 |
| chr_2 | g8615 | g8615.t3 | cds | g8615.t3.CDS8 | 31806796 | 31807184 |
| chr_2 | g8615 | g8615.t3 | exon | g8615.t3.exon9 | 31807631 | 31807733 |
| chr_2 | g8615 | g8615.t3 | cds | g8615.t3.CDS9 | 31807631 | 31807733 |
| chr_2 | g8615 | g8615.t3 | exon | g8615.t3.exon10 | 31808260 | 31808337 |
| chr_2 | g8615 | g8615.t3 | cds | g8615.t3.CDS10 | 31808260 | 31808337 |
| chr_2 | g8615 | g8615.t3 | exon | g8615.t3.exon11 | 31808498 | 31808734 |
| chr_2 | g8615 | g8615.t3 | cds | g8615.t3.CDS11 | 31808498 | 31808734 |
| chr_2 | g8615 | g8615.t3 | exon | g8615.t3.exon12 | 31808970 | 31809099 |
| chr_2 | g8615 | g8615.t3 | cds | g8615.t3.CDS12 | 31808970 | 31809099 |
| chr_2 | g8615 | g8615.t3 | exon | g8615.t3.exon13 | 31826400 | 31829483 |
| chr_2 | g8615 | g8615.t3 | cds | g8615.t3.CDS13 | 31826400 | 31829483 |
| chr_2 | g8615 | g8615.t3 | exon | g8615.t3.exon14 | 31830867 | 31831012 |
| chr_2 | g8615 | g8615.t3 | cds | g8615.t3.CDS14 | 31830867 | 31831012 |
| chr_2 | g8615 | g8615.t3 | exon | g8615.t3.exon15 | 31831435 | 31831714 |
| chr_2 | g8615 | g8615.t3 | cds | g8615.t3.CDS15 | 31831435 | 31831714 |
| chr_2 | g8615 | g8615.t3 | exon | g8615.t3.exon16 | 31832636 | 31832767 |
| chr_2 | g8615 | g8615.t3 | cds | g8615.t3.CDS16 | 31832636 | 31832767 |
| chr_2 | g8615 | g8615.t3 | exon | g8615.t3.exon17 | 31833043 | 31833225 |
| chr_2 | g8615 | g8615.t3 | cds | g8615.t3.CDS17 | 31833043 | 31833225 |
| chr_2 | g8615 | g8615.t3 | exon | g8615.t3.exon18 | 31833285 | 31833485 |
| chr_2 | g8615 | g8615.t3 | cds | g8615.t3.CDS18 | 31833285 | 31833485 |
| chr_2 | g8615 | g8615.t3 | exon | g8615.t3.exon19 | 31833564 | 31833791 |
| chr_2 | g8615 | g8615.t3 | cds | g8615.t3.CDS19 | 31833564 | 31833791 |
| chr_2 | g8615 | g8615.t3 | exon | g8615.t3.exon20 | 31833856 | 31834042 |
| chr_2 | g8615 | g8615.t3 | cds | g8615.t3.CDS20 | 31833856 | 31834042 |
| chr_2 | g8615 | g8615.t3 | exon | g8615.t3.exon21 | 31834118 | 31834232 |
| chr_2 | g8615 | g8615.t3 | cds | g8615.t3.CDS21 | 31834118 | 31834232 |
| chr_2 | g8615 | g8615.t3 | exon | g8615.t3.exon22 | 31834300 | 31834451 |
| chr_2 | g8615 | g8615.t3 | cds | g8615.t3.CDS22 | 31834300 | 31834451 |
| chr_2 | g8615 | g8615.t3 | exon | g8615.t3.exon23 | 31834534 | 31834835 |
| chr_2 | g8615 | g8615.t3 | cds | g8615.t3.CDS23 | 31834534 | 31834835 |
| chr_2 | g8615 | g8615.t3 | exon | g8615.t3.exon24 | 31835151 | 31835345 |
| chr_2 | g8615 | g8615.t3 | cds | g8615.t3.CDS24 | 31835151 | 31835345 |
| chr_2 | g8615 | g8615.t3 | exon | g8615.t3.exon25 | 31835411 | 31835519 |
| chr_2 | g8615 | g8615.t3 | cds | g8615.t3.CDS25 | 31835411 | 31835519 |
| chr_2 | g8615 | g8615.t3 | exon | g8615.t3.exon26 | 31835676 | 31835993 |
| chr_2 | g8615 | g8615.t3 | cds | g8615.t3.CDS26 | 31835676 | 31835993 |
| chr_2 | g8615 | g8615.t3 | exon | g8615.t3.exon27 | 31836150 | 31836307 |
| chr_2 | g8615 | g8615.t3 | cds | g8615.t3.CDS27 | 31836150 | 31836307 |
| chr_2 | g8615 | g8615.t3 | exon | g8615.t3.exon28 | 31836367 | 31836988 |
| chr_2 | g8615 | g8615.t3 | cds | g8615.t3.CDS28 | 31836367 | 31836988 |
| chr_2 | g8615 | g8615.t3 | exon | g8615.t3.exon29 | 31837073 | 31837142 |
| chr_2 | g8615 | g8615.t3 | cds | g8615.t3.CDS29 | 31837073 | 31837142 |
| chr_2 | g8615 | g8615.t3 | exon | g8615.t3.exon30 | 31837233 | 31837336 |
| chr_2 | g8615 | g8615.t3 | cds | g8615.t3.CDS30 | 31837233 | 31837336 |
| chr_2 | g8615 | g8615.t3 | exon | g8615.t3.exon31 | 31837532 | 31839132 |
| chr_2 | g8615 | g8615.t3 | cds | g8615.t3.CDS31 | 31837532 | 31839132 |
| chr_2 | g8615 | g8615.t3 | TSS | g8615.t3 | NA | NA |
| chr_2 | g8615 | g8615.t3 | TTS | g8615.t3 | NA | NA |
Sequences
>g8615.t3 Gene=g8615 Length=10587
ATGGGAGCGAAAGGTAGTGTGGAAGCCGCAAAAATGAATGCAGATAACTGGGGTCATCTG
GAGCGCGGACGAAGTAGTCAGTACGGCGGCGGTTATCGTCACAATCAACGCTCACAATCA
TTAAATAGAGGACAGGCTCTTTCACGTGCAGAAGTCGGAGGACAATCGGGCTGCGCAAGT
TGTGCAATGGGAAACAAATTGAGCTGCTCGTGTGCGCCATTGATGCGTAAAGGTTATCGT
TATGAAGACTCACCGTGGCAAACATCTCGCCGTCGTGATGGGCATCTCCTGAGGTTGTGG
GCGGAAGTGTTTCATGTGGCTGCGAGTGGTGCTGGTCAAGTGAAATGGCAACAAGTGTCT
GAGGATCTCGTGCCAGTCAACATCACATGCATACAGGATTCACCAGAATGTGTGTTCCAT
ATTACTGCTTATAATAGTCAAGTGGATAAAATTCTTGATGTTCGACTTGTTCAACCTGGT
ACAAGAATTGGACAAGCATCAGAATGTTTCGTATATTGGAAAGATCCAATGACAAACGAT
ACCTGGGGTCTAAATTTTACATCACCAATTGATGCGAAACAATTTAGGGAGTGCTGTTCA
CCATCATTTAAATTCTCGCGCAAGGCATCATCAAGTTATTCACTAAAATTAGATCCACCT
GGAAAAGGCAAAGTGAAACCAAAACGTAAACCGTTAAGTACACCAGCAAGTCCATCACGA
GCACGTGAACCTCAATGTACTTGCATGACTGCTGAGCAATATGCTCGAATTAAAGCACAA
GATCCACGATATCGAGGCTCATCAACTTTACCTCGACCAACAACAAAAGCCACCGATACT
GATTTAATGCGATCAGAAAAGCCTGTCACAACAGCATCAACGACATCACTTTATGATAAT
GTAACATCAAGCAATCAAGGACAAGGACAAGAAACTTTACAACGTCAAAAATCAGACACG
AGCACAATGACAAATATTTGTACAGCATCGGTTGGCACGCAGCAAAATCATGTTGGTTTA
CAAATAAGTCAGGATGATGCAAGTGATAAGAATGCACAACGTGAAGAGACTTCAAAATCA
GAAGGTACACAAGCTGGTGGAACATTACAAAATCAAAAGACAGCAGTAAAAACTTCAATT
TCAACTGGAACGGGTACTCGCACTAAAGACTATAATGAGAATATTATGCATGAACATCAG
ATTACAAGTAGCAAACGTAACAAATCAAAGAGCACTGAAGATATGAATGTTGATGCTGGA
ACACTCAAAAAGATGCTTAAACCACTTCATAACAACGAGAGTCCAGTGACATCACCTGAA
ATGGGTAGACGTCGCTACAATTACTACAATGCAGCTACAAACACAGCACCACATGGACAT
CAACATATTATACATAATAATCATTTCAATCATAATTCTATGTCACGTCAATCAAGCCAA
TCTTCACGTTTTTCTGGATCTCGTAGATCATCACATGAGATTGGACGTGGATATCAACCA
CCACGTGGACTATATCTGGAATTGGAAAAGGAACGTTGCGGACTGGAAGGATCACCACCA
TCAGATAATGTAATGTTTGATAATCAATGTTATGCAACTACTCCAAGCTCAAGTAATGGA
AATTCTGATCAGGAACCTGGCGGCTATGGATCGGGAACTGGTCGACCAAGACACCATTCG
CATCCTCATCAGCAGCAGCCAAATGTGACGCCAACACCGGGTTCACCGACATCACGTCTT
TTACTCGAATATGAAATGCATTTGCGCAACACGCTGGCCAAAGGAATGGATGCAGAATCA
TATAGTCTGCACACATTTGAAGCTCTATTATCACAAAGTATGGAAAATTTGGGATCATCC
TCAAGTGCCAAATCTTCTACCCTACCTTTACCACATCGCTTAAATGTCGAGCACTCTTAC
ATACCTAAAGAACGTGAACGTGATGGATATTATAGTGACCGCAATGAATTAATTAGAGAA
AGAGAACGCGAACGTGAGCGTGAACGTGGTTATTTAAGTGACCACAATTCAAGTTATTCA
ACATCACGTTGCGCATCTTGCATTGGTGAATCTGCTCGTGCACAGTGGTTCCGTCATTCG
GGTGGCTGGCGCTCGGGTAGCTCAACACTTGGTTCGGGCACGAATTTGATCTCACAAAGC
ACAACTGGTCATCGACGTTCACCATGGGACTCATTGCCCTCGCTTAAACAGGATGGATCA
CTCAATGACTCAGGCTATAAAAGCAATCGCGCTGACTCGTTTGAACAACGAGGTGTTTTT
GATCGACAAGATAGCTTACGCTCAGATTATTTGAGTGATCGTGAAACTCGCTATGGAATT
GTTCAGCAAGCATCAATAGATAGCACTGATTCCCGTTTGTGTTATCTTACTTCATCTGAG
CAAACAGCTTCAACTGCATCATCAAATAATAATAGTGAATCAAACGATAAAAATAAATCA
CTAACACTCGATTGTTGTTGCGTCGTCGTTCAAATTACCCCTGGGGCAACGGGCAAAGGA
TCGCAACAATCCGCAACTGTAGGCGATGGATCGAAAAAACATGGCGATGGGCTAAGTAGT
CGTGCGAATGGCGCGGCACCAATTTGTCGTTGCAGCAGTGCCGTTGCCAATCATATTTCG
TCACGATCAGATGATGCTGCTGCTTCCACTTCTTCAAATATTCCTGGTGGTGCAACAACT
TCTACGCCATCAACGAGTCATAAATCCATGATGATGACTGGACAATCATTTGGTGCCAAA
AGTAGATCCGGTTCACTCGATCAACTGCTTTTCCTGACAGATCAACTCGCTGCACATACA
TTGCAGAGACAGGAAAACAGACATACGGGCCGTAGAGAAATTACAGCCGATGATTTATTT
AATTATCTAAAAGACATCAATGGCGATCTTAAGTTTGTAGATAAAAAACGTTTAGCTCAA
TTATTGTTACAAAATACTGAAGAAATGGTTGCACAACAACATCAATTACAACAGCAGCAG
CATCAGCAAAGTGTCACTGGTACCATACGAAAGCATACGCCAGTTAGTCGACAAGAATCT
GGTGGAGAGAAGCAGATTCATTTTGTCAATAATATCGGTCCAACACCACCGCCTACGAAT
CCAATCGATGCTCCAACAAAAAGCATTCTTCAAACATCGCGCAAGTCTAAATTTAGTAGT
GGAAATAAAGTTGAAATGCTTGATATTGCACAGCAGCAAAAAGAATTTAGTGATGAATGG
CTTAATCGTTCTCATTCACAACGCATTTCATCGCGTTCTGTTGAAGTGTCTTCCACAATG
CCAAAACCAGATCAAATTCAATCTAGCAAAAAGCATCATAAACATCATCAGCGGCATTTT
TCTGGTCCTGAAGATCTTGAAGCACTAAAAAAGGACATTGCACATTGGCTTGAACGACAT
CCATATAAGAAAGATGCTGCATTACTTGACCTTATTGAAACTGCTGCTAGACTTAAACAT
GAAAAACATCAACATCCACAACAAGGCATAATGAAGCCAAAAACACTAATTAAAAATGAA
TTTGCTGACATTATTCGTCCACCTTTGCCACAAAAGCAAAGATCACAGCAGCAGCAACAG
CCTCCTCCACTTCCAATGAAACAATTTCAACGACAAAAGTCAGCCGATGACCTGCGTGTC
CTTAAAAATAACATATTAGAATGGTTAACAAAACAACAGATTATGAATCAACAAAGGTTA
CAATTACAACAGCAACAAATGGTGCCATTGAAAAGTGCCATAGTAGAGTCAAAAGCAGGT
GAGTCAGTCAAGTCACAGACGACAACTGCACCACCGCCATTGCCCCGTAAAACGCACCAG
AAGTTGCATAAACGTCATTCATTAGGTCCAAGTGATGAATCATCAGATTTTCATGAAATT
CCACTTGATTGGATTCAAATTCCAATTGAAAAACTTAATAAAATGCGTGAAGTTCAAAAG
AGTTGTGCTGAAATTAGTCGTAAAGGAAGTGGCAAAGAACAAAAGTCCACACTTCCATCA
TCGCATGAGCGAGCACATCATAGATCCGTTGAACGTAGGTTACGTCATTCAGCAAGTGAA
GTAGTTCAATCGAATGTAGATAGAAGTCATAAGATAATGCAACAGCAGCAACCGCCAAGT
CAAGTTCAATATCAATTAATTCAACATTCACAACAAATGCCTATGCAAGCTTCTTCTTCT
CAGCAGCAACAACAGCAAATTCAGCAGCAGCCACAATATCAAATAGTTCAACGCTATCGC
GAACCAACGAGAGTAGTAGCAGAACGTCATCATAGTCATGATCATCATAATGGCCATCAT
TCGAGTGGTGAACAAAGAACATCGAAAAGGGATAAGCCCGCTAGGCATCATCGACAGACA
CAACGTTCTGCAACGACAAGTAATATGTTGCCAGGTCGACAACCAAGTAGTAGTAGTCAT
GGAGGTGGCAGCAGTTCGCATCATAGCGTTGGAAGTGATCTTAAGGCAATTTATCAGTCA
ACAACTTCGCTTGTGCGTTGCGATGACCCTATGTGTCCACTGTTGCCTATTTGTACGGAT
CCAAACTGTTATTTGAATGCCAATTCACACTACGATACGCCACGACGTGCCTCATTACCA
CCGCGTTCAAATGAGATGCTACAGGATAGCGATATCTGTACAGATCCGCGTTGTTGCGAG
TCGCTTCCAATATGTACAGATCCTCGTTGCTGTGGCACGATTGCTCGCTCAAAATCAAAA
GCCGCCATTGGCGTCAGTGCCCATCACAAATTCAAAAGCAATTCACTGCCGCGTTGCGTT
GAATCACAATCAACAAGACGCTCCGATCTCTTTTTATCGGGTTTATCAAAAGACGAATCG
TACTCGTCACTCCCTAAATCTGCGACACTCTCGTCTGCCACTGCTCAAGCATCATCTGCA
CATAATAAGCCTATTACTGCTACTAACATAACTACAACAACTACTGCTAGTCATAGTAAT
AATAAAATAAATAATATTAATCATAGTCATAGTAAAACACGTGCACATCGCAATGGTAAT
AATAAGCTCATGAAATCGGCCTCGGCTGCGTCACTTAATTCACGCCGTCGTCGTCATAAG
ACAGTTCATTTTGGCGAAAATTTGCTTCGCGAAGTTTGTCAAAATCGTCAGCTTATTAAA
CCGTTAACAGATCAGCCGTCCAATTCGTCGTCGACATTGCAGCCAAATATTCAAATGTTA
TATAATTTTGTAGAGGGTGTATTGAGTGCCTGGGTAGATGAAGAGGATGACGATAATATC
AAATCGGGTCCCGATTCAGAACCTGAACGGGGTGCTATTTTAAAGCCCATGCATCGATGC
AATAGGGCACGCTTACAAACAATTCGTCGTGTAGTTAATGAAGCGGCTGCTCTTAAAGGC
ACTCTTAAACTTGGCAACTCACGCTATCGCCATCGACATTGGCGTGGCACAGCAAAAGAC
TGTAATGAGCGATTTCTTCGGAAGATCAGCGACGATGATCGAATGAGTTTAACGACCGCA
ATATCTGATGAGGATGACGGTGAAAGCATCATGGCATCACCATATAAGGCAAAAGCACAG
GGTACAGCTTCAGCTTCATTTAATTGCACGGGTGCTGTACGAAAGGCAGGCTTTTTATCA
GTTAAAAAATGGCTATTGCGCAAAAAGCATCAAATTGAATTGGCTCGTAAACGCGGCTGG
AAGGGTTATTGGGTCTGTTTAAAAGGAACAACGTTGCTCTTCTATCCATGTGATTCGCGT
GAGGGACGTTCAGTTGAAGCAGCACCAAAGCACTTAATCATAGTCGATGGCGCAATCATG
CAGCCAATCCCCGAGCATCCCAAACGTGATTACATATTTTGCCTTAGCACCGCGTTCGGA
GATGCTTATTTGTTTCAAGCGCCATGTCAAGTGGAATTGGAAAATTGGGTCAACAGCATT
CATTCAGCTTGTGCTGCAGCATTCGCACGTCATCGTGGCAAAACTGGAACATTGCATTTA
CTACAAGAAGAAATTTTCCGTTTGGATAAAGCAATTGAATCGGATCACAAGCTGAAACAT
ATGGCTGATTTACAATCGAGTGTCGTCACCGACCAAGATACTAGAATTCAAATTCAACAG
CAGATTATTACATGGGAGGAAAATTTGGAACGCTTACATTGTGAGCAGTTCCGTTTGCGT
TGTTACATGGCTTCCTTACAATGTGGTGAATTACCAAATCCTAAATCATTGCTCACTCAC
GTCTCACGCCCTACAAAAAATACACTCAATAAGTTGGGCGTCTTTACGGTTTCATCATTC
CATGCATTCATTTGTGCTCGTTCACCATCGCTTTTGAACAATTTGCTCGCAGGTCGCGGT
GCCACTAAACGTCGTCCACCGCTGTTATCACGTTCAAATAGCGGATCTAGTCGTCGCTCT
ATGCAGATGAGCTCCCGTGATGATTCAGAAAAAAGTTATAACGTTCCACTACCAGATAAT
AGCTATGTTACGGTATATTTACGTGAGAGTATGACAGTCGAAGAATTCTTGGCAACTGCA
TGTGTTAGAAAAAATCTTAATCCAATGGAACATTTTGTTCGTGTTAAGAAACGACGTGAA
ATGGAAGATCATAATTACTTTGTACCGCATCGAAATGATTTAATTGAAACTTATTTGCAT
ACACATGAAATAGTCGAAGTTTGTGCAAAAATTTTATATCAAGTTGAACTTCAACGTTCA
ACATTAGAACAAATGTGGGGCTTCTCGGTCGAAGCTGAGCTAATTGAGAATGCCGATCGT
CAAGATGAATTATGTTGTTATGTTAGTCGTGTTGAGGATAAAAGTGTCGCTCTACAAAAC
GGTATTATTAAGGGAGATGAAATTATTGTTATCAATGGTGCCATTGTGTCCGATTTGGAT
ATGATGTATTTAGAGAGTGTTTTGCAAGAAGAGCAAGCGTTATGCATGATGATGAGATCA
TCACGAGTTGAACCACCAGATCTTACATGCATATTGCGTTCAACTGATGATATAATCGAA
TCTTTGGTATGTCCACCTCCACCAACTGATCCAGGCATGATGAGTGAAGAAATGATTACT
GGATTAATTGTTCCTGCACCTAATTGGAAACGACCTGGCGTTGAACATCACGATTCTGTG
ACATCAGATCAGCAGCTCATTGACAGCAGTCGCCAAAAGGTGCAATCACGCACGAGTAGC
TTTGAGATAGAAAATTTGCTAAAGACGGCTGAGCAAGTGACAACATATTGCCGTTCACCG
CAAGAGACACGCAAATCGAGTCCCACTGGTTCTGTAACATCATCGGCAGCATCGAACGCA
GTCCTGACTCCATCACGTCAATTAACTGACGCAGAAAAATTGCGAAAAGTCATCTTGGAA
TTAGTTGATACGGAACGAGCTTATGTTAAGCATTTGAACAATCTTCTTGAGCACTACTTG
GAGCCATTGAAACGTGAAACTTTCCTCTCCAATGCTGAAATAACGGCTTTATTTGGTAAC
ATTCAGGAAATTGTCACATTCCAGCGTCAATTTTTACAAAATTTAGAAGAAGCCTTAGAG
ATAGAGCCCGATTTCCACAGATTCGATCATTCTAGCCAATTCAGAAATGTTCTTTTTGCT
ATTGGATCTGCATTTTTATACTACGTTAATCATTTCAAATTGTACTCTTCATTCTGTGCA
AGTCATAGTAAGGCACAGAAAGTTTTACATCCAAATGAAGGCAATCAAGCATTACAGGAA
TTTTTACTCTCTAAAAATCCAAGACAAGAACATAGCAGCACATTAGAATCATATCTCATA
AAACCAATACAAAGAATTTTAAAATATCCCTTGTTGCTGCAGCAGTTGAAAAATCTAACT
GATCCTTATGCAGAAGAGCATCAACATCTTATTGAAGCTTTAAAAGGAATGGAAAAAGTT
GCAGAACATATTAATGAAATGCAGCGAATTCATGAAGAATATGGTGCAATATTTGATCAT
CTTTTTAGACAGCATCAAAAGTCTTGCAAACAACCAATTGATCTTAGTCCAGGTGACTTG
CTATATTATGGTGGAGTCGAATGGCTCAACATTTCGGACTTCCTTGGTAAAATTAAAAAG
GGATTAGAATTGCATGCCATGTGCTTTGTCTTCAAATCAGCAGTTGTCTTCCTATGTAAA
GAGCGTCTTCGTCAAAAGAAAAAATTAATGGGCGTATCAAATAAAAATGCTCCCAATGAG
GTTGAAATTATTCGCTATCAAGTTCTAATTCCGGTCACTGAAGTGCAAGTTCGTGCGTCC
TCGGCAAAGGACATGGATTCGCATTTCCTTTGGGAATTAATTCATTTACGTTCGCAACTA
CAACGACGCTCAGAAAAGGTCTATGTTTTATCAAATAGTACAGCTGACTTCCGAAATGCA
TTCCTTAAAACAATTCGTCAAATCATTCGTGAAAGTGTTCGTAATATGTCGATTCCAATT
AAAGAACGTGGCAGTATCAGTTCAGTTTCTTCTGCTGGCGGTGGTCCACACTTTTCTGGC
AATTCACAAACATTAGAGCGACCAAAGCAGACATCGAGCATTCAGCAAGGCTCACAGACT
CTTGGAAAGCCAAAGAAAAAGAATAATCAACGACTTAGTGCTGGTAATATCGATTATGAC
AATCTTCATGGTAGTTCACAAGAGCACGACTATGGTATGGAACAAGAAGAGGCACCACCA
ATCTTTAGAATCCGCAGTAAAACTGTTGGTGATGATGGCGGACCACCACCCGTCCCAAAA
AGAACGACATCAGAATTGACTACAGAAAAAGATCCGGGTATAAAATCAGAAGGTGAAGAT
GAATCTCTTATGGGTCATAGATCGAAATCTTTGGGCCGAACACCTAATCATTTAACTTTA
AGCACGACATCAACGCTCTCGGTTGGAAGTACTGGTAGCCAAGCGCGTTTGATTCAATCT
TCTCACGCGCCATCGCATTATCAGCCTGTTTTAATGAAAGATTTAGGTAAGACATCTTCA
ACCGATTCGGGAGAATCGATAAGTTTTCACACAGAAAAATCATCAGACTCAACCTCGGGC
GTTGACGTTAATGATGATAACTATCAGTTGACGGACGAGATTGTTGATAAGCATTTGGAT
GATTTGAAAAAGGAATGTTTGTCATATGAGACACGTGATGTGGCAAAGTTCATGGAAAAG
CTTAAGACGCAATCGGAATCTTTGGATGGCGGTGATGGCAGTCAAGATGAGAAGAAGGCC
GAGATTGTTGCATTGGAAAAGAAATCAGCTCGTCGTGAGTCAGAATCAAGAAAAGAATTG
GAAATAATGATGAAGCAAAAAGAAGAAAAAGGAAAACGAGACTCAACTTCATCAATTAAA
TCGCATAGAAAATCTTCATCATCATCACCGACATTGAGAAAACCAAAAACCATCGATATG
GATGCGACTTCACATTTGTCACCTACAAGACAACAAATTGACAGCAGTCAGGTACAAATT
ATTAAGATAAAATCGCCAAGTGGCAGTCGTAGACCATCACGTGAAGCATCGCGTAATAAT
TCAGTTGAACGTTCACCCTCAAGGGAAATGCAACAACAGCAAACATTAAAGAAACCTGAA
GGTGGTATTTTAAAGAAACCATCACCTAAATTTGGCAAAGCGAGTGAATATAAATTGTCA
AATAGTTTAAGACCAGACAGTTTCATCAGTCCATTTAGCAGCTTTGAATCTAAAAGCGAC
AAACTTTCACCATCATCTGAAATATTGCCAACATTCTGTGCAAAAGAAGCACAAAAGCGT
GCTTCATTATCTGACTATGAAAGAGATCCACAAGACTATCATCATCAGGCAATGAAATCG
AGATCTTTAGAAAGCAGCTTGGAGCATTTAAAATCAGCATTGAAGCATCAAAGCAGCTAT
GAACAGCAACAACCATATTGTTTGTCACCAATGCATGATCCAAATCGATACTATAACTTG
TCAGCTCAACATTCAATTGAATCAAATCGATCACCAGTTCGTTATTGTTCACCAGTTCCA
CCACATTATTATAATGAACCATTTTATGAATATCCAAGACATAAAGCAAGACAACGTGAA
TCTCGTTCACTTGAACGACCTGATTTTTCACGTCAAAGTTCATCAGAATATGAAAGATAT
TATGAGGAACCACCACCTTATTCTCATCATCATGATGAACAACGTACAAGACGTCATAGT
GTCTATGAACATCGTTCAATTCCCTATCATTACTATTCAATGTCACCCGATGACTATCTT
ATGTCGGCCTCTTCTCATTACGAACAACCATCAGCTTGTGTCGATTGCTATTATCAAACG
TATCGACAACCATCGCATTTGCATCACTATACACAACAACCACCGCCCTTACCAAAGCGC
AATTCATCATCATCATCACAACAGCAGCAGCAACAATCTAAAAGTCCATCGCAATCACGT
CAACGTCAATCGCGGTCTCGTAAAAAACTCTCGCGTCGAATGTCTTCCAATTATTTCAAT
AAATCCTTTGACGATGATGAAAATATGAATAGCAGCGGCACTTCATCCAACAAGCCAATG
CACGATAATGAAGAGATTCGTGTTTAA
>g8615.t3 Gene=g8615 Length=3528
MGAKGSVEAAKMNADNWGHLERGRSSQYGGGYRHNQRSQSLNRGQALSRAEVGGQSGCAS
CAMGNKLSCSCAPLMRKGYRYEDSPWQTSRRRDGHLLRLWAEVFHVAASGAGQVKWQQVS
EDLVPVNITCIQDSPECVFHITAYNSQVDKILDVRLVQPGTRIGQASECFVYWKDPMTND
TWGLNFTSPIDAKQFRECCSPSFKFSRKASSSYSLKLDPPGKGKVKPKRKPLSTPASPSR
AREPQCTCMTAEQYARIKAQDPRYRGSSTLPRPTTKATDTDLMRSEKPVTTASTTSLYDN
VTSSNQGQGQETLQRQKSDTSTMTNICTASVGTQQNHVGLQISQDDASDKNAQREETSKS
EGTQAGGTLQNQKTAVKTSISTGTGTRTKDYNENIMHEHQITSSKRNKSKSTEDMNVDAG
TLKKMLKPLHNNESPVTSPEMGRRRYNYYNAATNTAPHGHQHIIHNNHFNHNSMSRQSSQ
SSRFSGSRRSSHEIGRGYQPPRGLYLELEKERCGLEGSPPSDNVMFDNQCYATTPSSSNG
NSDQEPGGYGSGTGRPRHHSHPHQQQPNVTPTPGSPTSRLLLEYEMHLRNTLAKGMDAES
YSLHTFEALLSQSMENLGSSSSAKSSTLPLPHRLNVEHSYIPKERERDGYYSDRNELIRE
RERERERERGYLSDHNSSYSTSRCASCIGESARAQWFRHSGGWRSGSSTLGSGTNLISQS
TTGHRRSPWDSLPSLKQDGSLNDSGYKSNRADSFEQRGVFDRQDSLRSDYLSDRETRYGI
VQQASIDSTDSRLCYLTSSEQTASTASSNNNSESNDKNKSLTLDCCCVVVQITPGATGKG
SQQSATVGDGSKKHGDGLSSRANGAAPICRCSSAVANHISSRSDDAAASTSSNIPGGATT
STPSTSHKSMMMTGQSFGAKSRSGSLDQLLFLTDQLAAHTLQRQENRHTGRREITADDLF
NYLKDINGDLKFVDKKRLAQLLLQNTEEMVAQQHQLQQQQHQQSVTGTIRKHTPVSRQES
GGEKQIHFVNNIGPTPPPTNPIDAPTKSILQTSRKSKFSSGNKVEMLDIAQQQKEFSDEW
LNRSHSQRISSRSVEVSSTMPKPDQIQSSKKHHKHHQRHFSGPEDLEALKKDIAHWLERH
PYKKDAALLDLIETAARLKHEKHQHPQQGIMKPKTLIKNEFADIIRPPLPQKQRSQQQQQ
PPPLPMKQFQRQKSADDLRVLKNNILEWLTKQQIMNQQRLQLQQQQMVPLKSAIVESKAG
ESVKSQTTTAPPPLPRKTHQKLHKRHSLGPSDESSDFHEIPLDWIQIPIEKLNKMREVQK
SCAEISRKGSGKEQKSTLPSSHERAHHRSVERRLRHSASEVVQSNVDRSHKIMQQQQPPS
QVQYQLIQHSQQMPMQASSSQQQQQQIQQQPQYQIVQRYREPTRVVAERHHSHDHHNGHH
SSGEQRTSKRDKPARHHRQTQRSATTSNMLPGRQPSSSSHGGGSSSHHSVGSDLKAIYQS
TTSLVRCDDPMCPLLPICTDPNCYLNANSHYDTPRRASLPPRSNEMLQDSDICTDPRCCE
SLPICTDPRCCGTIARSKSKAAIGVSAHHKFKSNSLPRCVESQSTRRSDLFLSGLSKDES
YSSLPKSATLSSATAQASSAHNKPITATNITTTTTASHSNNKINNINHSHSKTRAHRNGN
NKLMKSASAASLNSRRRRHKTVHFGENLLREVCQNRQLIKPLTDQPSNSSSTLQPNIQML
YNFVEGVLSAWVDEEDDDNIKSGPDSEPERGAILKPMHRCNRARLQTIRRVVNEAAALKG
TLKLGNSRYRHRHWRGTAKDCNERFLRKISDDDRMSLTTAISDEDDGESIMASPYKAKAQ
GTASASFNCTGAVRKAGFLSVKKWLLRKKHQIELARKRGWKGYWVCLKGTTLLFYPCDSR
EGRSVEAAPKHLIIVDGAIMQPIPEHPKRDYIFCLSTAFGDAYLFQAPCQVELENWVNSI
HSACAAAFARHRGKTGTLHLLQEEIFRLDKAIESDHKLKHMADLQSSVVTDQDTRIQIQQ
QIITWEENLERLHCEQFRLRCYMASLQCGELPNPKSLLTHVSRPTKNTLNKLGVFTVSSF
HAFICARSPSLLNNLLAGRGATKRRPPLLSRSNSGSSRRSMQMSSRDDSEKSYNVPLPDN
SYVTVYLRESMTVEEFLATACVRKNLNPMEHFVRVKKRREMEDHNYFVPHRNDLIETYLH
THEIVEVCAKILYQVELQRSTLEQMWGFSVEAELIENADRQDELCCYVSRVEDKSVALQN
GIIKGDEIIVINGAIVSDLDMMYLESVLQEEQALCMMMRSSRVEPPDLTCILRSTDDIIE
SLVCPPPPTDPGMMSEEMITGLIVPAPNWKRPGVEHHDSVTSDQQLIDSSRQKVQSRTSS
FEIENLLKTAEQVTTYCRSPQETRKSSPTGSVTSSAASNAVLTPSRQLTDAEKLRKVILE
LVDTERAYVKHLNNLLEHYLEPLKRETFLSNAEITALFGNIQEIVTFQRQFLQNLEEALE
IEPDFHRFDHSSQFRNVLFAIGSAFLYYVNHFKLYSSFCASHSKAQKVLHPNEGNQALQE
FLLSKNPRQEHSSTLESYLIKPIQRILKYPLLLQQLKNLTDPYAEEHQHLIEALKGMEKV
AEHINEMQRIHEEYGAIFDHLFRQHQKSCKQPIDLSPGDLLYYGGVEWLNISDFLGKIKK
GLELHAMCFVFKSAVVFLCKERLRQKKKLMGVSNKNAPNEVEIIRYQVLIPVTEVQVRAS
SAKDMDSHFLWELIHLRSQLQRRSEKVYVLSNSTADFRNAFLKTIRQIIRESVRNMSIPI
KERGSISSVSSAGGGPHFSGNSQTLERPKQTSSIQQGSQTLGKPKKKNNQRLSAGNIDYD
NLHGSSQEHDYGMEQEEAPPIFRIRSKTVGDDGGPPPVPKRTTSELTTEKDPGIKSEGED
ESLMGHRSKSLGRTPNHLTLSTTSTLSVGSTGSQARLIQSSHAPSHYQPVLMKDLGKTSS
TDSGESISFHTEKSSDSTSGVDVNDDNYQLTDEIVDKHLDDLKKECLSYETRDVAKFMEK
LKTQSESLDGGDGSQDEKKAEIVALEKKSARRESESRKELEIMMKQKEEKGKRDSTSSIK
SHRKSSSSSPTLRKPKTIDMDATSHLSPTRQQIDSSQVQIIKIKSPSGSRRPSREASRNN
SVERSPSREMQQQQTLKKPEGGILKKPSPKFGKASEYKLSNSLRPDSFISPFSSFESKSD
KLSPSSEILPTFCAKEAQKRASLSDYERDPQDYHHQAMKSRSLESSLEHLKSALKHQSSY
EQQQPYCLSPMHDPNRYYNLSAQHSIESNRSPVRYCSPVPPHYYNEPFYEYPRHKARQRE
SRSLERPDFSRQSSSEYERYYEEPPPYSHHHDEQRTRRHSVYEHRSIPYHYYSMSPDDYL
MSASSHYEQPSACVDCYYQTYRQPSHLHHYTQQPPPLPKRNSSSSSQQQQQQSKSPSQSR
QRQSRSRKKLSRRMSSNYFNKSFDDDENMNSSGTSSNKPMHDNEEIRV
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 23 | g8615.t3 | CDD | cd01230 | PH1_Tiam1_2 | 1871 | 1996 | 1.13847E-79 |
| 24 | g8615.t3 | CDD | cd00992 | PDZ_signaling | 2232 | 2310 | 4.76433E-7 |
| 22 | g8615.t3 | CDD | cd00160 | RhoGEF | 2454 | 2645 | 3.28967E-54 |
| 21 | g8615.t3 | CDD | cd01255 | PH2_Tiam1_2 | 2648 | 2819 | 7.0275E-96 |
| 19 | g8615.t3 | Coils | Coil | Coil | 3090 | 3110 | - |
| 20 | g8615.t3 | Coils | Coil | Coil | 3528 | 3528 | - |
| 16 | g8615.t3 | Gene3D | G3DSA:2.30.29.30 | - | 91 | 208 | 8.0E-19 |
| 14 | g8615.t3 | Gene3D | G3DSA:2.30.29.30 | - | 1868 | 1994 | 8.7E-32 |
| 18 | g8615.t3 | Gene3D | G3DSA:2.30.42.10 | - | 2227 | 2322 | 1.5E-7 |
| 17 | g8615.t3 | Gene3D | G3DSA:1.20.900.10 | - | 2444 | 2646 | 2.7E-70 |
| 15 | g8615.t3 | Gene3D | G3DSA:2.30.29.30 | - | 2648 | 2810 | 4.3E-70 |
| 32 | g8615.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 214 | 321 | - |
| 66 | g8615.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 267 | 321 | - |
| 36 | g8615.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 342 | 385 | - |
| 60 | g8615.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 358 | 385 | - |
| 65 | g8615.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 472 | 488 | - |
| 67 | g8615.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 472 | 502 | - |
| 59 | g8615.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 534 | 575 | - |
| 74 | g8615.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 534 | 548 | - |
| 50 | g8615.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 710 | 759 | - |
| 70 | g8615.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 710 | 751 | - |
| 64 | g8615.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 838 | 859 | - |
| 37 | g8615.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 886 | 909 | - |
| 42 | g8615.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1078 | 1123 | - |
| 71 | g8615.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1083 | 1105 | - |
| 35 | g8615.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1190 | 1212 | - |
| 56 | g8615.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1190 | 1207 | - |
| 69 | g8615.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1258 | 1295 | - |
| 53 | g8615.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1259 | 1274 | - |
| 44 | g8615.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1323 | 1413 | - |
| 72 | g8615.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1323 | 1358 | - |
| 49 | g8615.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1359 | 1413 | - |
| 34 | g8615.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1427 | 1450 | - |
| 55 | g8615.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1427 | 1491 | - |
| 38 | g8615.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1460 | 1491 | - |
| 62 | g8615.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 2123 | 2152 | - |
| 40 | g8615.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 2127 | 2152 | - |
| 48 | g8615.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 2417 | 2439 | - |
| 63 | g8615.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 2825 | 2870 | - |
| 52 | g8615.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 2907 | 3026 | - |
| 73 | g8615.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 2924 | 2947 | - |
| 54 | g8615.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 2952 | 2986 | - |
| 47 | g8615.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 2994 | 3026 | - |
| 58 | g8615.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 3064 | 3120 | - |
| 68 | g8615.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 3064 | 3220 | - |
| 33 | g8615.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 3142 | 3167 | - |
| 46 | g8615.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 3168 | 3182 | - |
| 51 | g8615.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 3183 | 3198 | - |
| 43 | g8615.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 3259 | 3284 | - |
| 45 | g8615.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 3260 | 3284 | - |
| 41 | g8615.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 3354 | 3399 | - |
| 39 | g8615.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 3450 | 3528 | - |
| 61 | g8615.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 3450 | 3480 | - |
| 57 | g8615.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 3495 | 3519 | - |
| 6 | g8615.t3 | PANTHER | PTHR46001 | TIAM (MAMMALIAN TUMOR INVASION AND METASTASIS FACTOR) HOMOLOG | 133 | 615 | 0.0 |
| 8 | g8615.t3 | PANTHER | PTHR46001:SF3 | PROTEIN STILL LIFE, ISOFORM SIF TYPE 1 | 133 | 615 | 0.0 |
| 5 | g8615.t3 | PANTHER | PTHR46001 | TIAM (MAMMALIAN TUMOR INVASION AND METASTASIS FACTOR) HOMOLOG | 960 | 3017 | 0.0 |
| 7 | g8615.t3 | PANTHER | PTHR46001:SF3 | PROTEIN STILL LIFE, ISOFORM SIF TYPE 1 | 960 | 3017 | 0.0 |
| 3 | g8615.t3 | Pfam | PF00169 | PH domain | 1883 | 1984 | 2.0E-12 |
| 2 | g8615.t3 | Pfam | PF18385 | T-lymphoma invasion and metastasis CC-Ex domain | 2012 | 2107 | 6.9E-11 |
| 4 | g8615.t3 | Pfam | PF02196 | Raf-like Ras-binding domain | 2155 | 2225 | 2.2E-14 |
| 1 | g8615.t3 | Pfam | PF00621 | RhoGEF domain | 2457 | 2645 | 1.7E-42 |
| 31 | g8615.t3 | ProSitePatterns | PS00741 | Dbl homology (DH) domain signature. | 2595 | 2620 | - |
| 77 | g8615.t3 | ProSiteProfiles | PS50229 | WH1 domain profile. | 88 | 206 | 21.154 |
| 79 | g8615.t3 | ProSiteProfiles | PS50003 | PH domain profile. | 1872 | 1985 | 11.281 |
| 75 | g8615.t3 | ProSiteProfiles | PS50898 | Ras-binding domain (RBD) profile. | 2151 | 2218 | 19.905 |
| 78 | g8615.t3 | ProSiteProfiles | PS50106 | PDZ domain profile. | 2234 | 2310 | 10.094 |
| 76 | g8615.t3 | ProSiteProfiles | PS50010 | Dbl homology (DH) domain profile. | 2453 | 2647 | 35.119 |
| 30 | g8615.t3 | SMART | SM00461 | WH1_2 | 98 | 203 | 1.7E-37 |
| 27 | g8615.t3 | SMART | SM00233 | PH_update | 1873 | 1987 | 1.6E-14 |
| 29 | g8615.t3 | SMART | SM00455 | RBD_5 | 2151 | 2218 | 1.8E-15 |
| 25 | g8615.t3 | SMART | SM00228 | pdz_new | 2244 | 2322 | 4.3E-5 |
| 26 | g8615.t3 | SMART | SM00325 | RhoGEF_3 | 2457 | 2646 | 1.9E-57 |
| 28 | g8615.t3 | SMART | SM00233 | PH_update | 2689 | 2812 | 0.14 |
| 11 | g8615.t3 | SUPERFAMILY | SSF50729 | PH domain-like | 94 | 205 | 1.14E-22 |
| 9 | g8615.t3 | SUPERFAMILY | SSF50729 | PH domain-like | 1875 | 1983 | 1.81E-17 |
| 12 | g8615.t3 | SUPERFAMILY | SSF50156 | PDZ domain-like | 2230 | 2320 | 1.86E-7 |
| 13 | g8615.t3 | SUPERFAMILY | SSF48065 | DBL homology domain (DH-domain) | 2451 | 2658 | 3.93E-51 |
| 10 | g8615.t3 | SUPERFAMILY | SSF50729 | PH domain-like | 2653 | 2816 | 4.98E-63 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0090630 | activation of GTPase activity | BP |
| GO:0007165 | signal transduction | BP |
| GO:0005515 | protein binding | MF |
| GO:0007264 | small GTPase mediated signal transduction | BP |
| GO:0035556 | intracellular signal transduction | BP |
| GO:0005085 | guanyl-nucleotide exchange factor activity | MF |
KEGG
Orthology
- This transcript has been annotated with K05731 (T-lymphoma invasion and metastasis-inducing protein 1)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed