General information for g8615.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Protein still life, isoforms C/SIF type 2.
Parent gene
- The parent gene g8615 is located on chr_2: 31808260..31839132 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8615 | g8615.t4 | isoform | g8615.t4 | 31796377 | 31839132 |
| chr_2 | g8615 | g8615.t4 | exon | g8615.t4.exon1 | 31796377 | 31796439 |
| chr_2 | g8615 | g8615.t4 | cds | g8615.t4.CDS1 | 31796377 | 31796439 |
| chr_2 | g8615 | g8615.t4 | exon | g8615.t4.exon2 | 31801895 | 31801988 |
| chr_2 | g8615 | g8615.t4 | cds | g8615.t4.CDS2 | 31801895 | 31801988 |
| chr_2 | g8615 | g8615.t4 | exon | g8615.t4.exon3 | 31802685 | 31802820 |
| chr_2 | g8615 | g8615.t4 | cds | g8615.t4.CDS3 | 31802685 | 31802820 |
| chr_2 | g8615 | g8615.t4 | exon | g8615.t4.exon4 | 31805033 | 31805226 |
| chr_2 | g8615 | g8615.t4 | cds | g8615.t4.CDS4 | 31805033 | 31805226 |
| chr_2 | g8615 | g8615.t4 | exon | g8615.t4.exon5 | 31805288 | 31805406 |
| chr_2 | g8615 | g8615.t4 | cds | g8615.t4.CDS5 | 31805288 | 31805406 |
| chr_2 | g8615 | g8615.t4 | exon | g8615.t4.exon6 | 31805649 | 31805982 |
| chr_2 | g8615 | g8615.t4 | cds | g8615.t4.CDS6 | 31805649 | 31805982 |
| chr_2 | g8615 | g8615.t4 | exon | g8615.t4.exon7 | 31806199 | 31806730 |
| chr_2 | g8615 | g8615.t4 | cds | g8615.t4.CDS7 | 31806199 | 31806730 |
| chr_2 | g8615 | g8615.t4 | exon | g8615.t4.exon8 | 31806799 | 31807184 |
| chr_2 | g8615 | g8615.t4 | cds | g8615.t4.CDS8 | 31806799 | 31807184 |
| chr_2 | g8615 | g8615.t4 | exon | g8615.t4.exon9 | 31807631 | 31807733 |
| chr_2 | g8615 | g8615.t4 | cds | g8615.t4.CDS9 | 31807631 | 31807733 |
| chr_2 | g8615 | g8615.t4 | exon | g8615.t4.exon10 | 31808260 | 31808337 |
| chr_2 | g8615 | g8615.t4 | cds | g8615.t4.CDS10 | 31808260 | 31808337 |
| chr_2 | g8615 | g8615.t4 | exon | g8615.t4.exon11 | 31808498 | 31808734 |
| chr_2 | g8615 | g8615.t4 | cds | g8615.t4.CDS11 | 31808498 | 31808734 |
| chr_2 | g8615 | g8615.t4 | exon | g8615.t4.exon12 | 31808970 | 31809099 |
| chr_2 | g8615 | g8615.t4 | cds | g8615.t4.CDS12 | 31808970 | 31809099 |
| chr_2 | g8615 | g8615.t4 | exon | g8615.t4.exon13 | 31826400 | 31829483 |
| chr_2 | g8615 | g8615.t4 | cds | g8615.t4.CDS13 | 31826400 | 31829483 |
| chr_2 | g8615 | g8615.t4 | exon | g8615.t4.exon14 | 31830867 | 31831012 |
| chr_2 | g8615 | g8615.t4 | cds | g8615.t4.CDS14 | 31830867 | 31831012 |
| chr_2 | g8615 | g8615.t4 | exon | g8615.t4.exon15 | 31831435 | 31831714 |
| chr_2 | g8615 | g8615.t4 | cds | g8615.t4.CDS15 | 31831435 | 31831714 |
| chr_2 | g8615 | g8615.t4 | exon | g8615.t4.exon16 | 31832636 | 31832767 |
| chr_2 | g8615 | g8615.t4 | cds | g8615.t4.CDS16 | 31832636 | 31832767 |
| chr_2 | g8615 | g8615.t4 | exon | g8615.t4.exon17 | 31833043 | 31833225 |
| chr_2 | g8615 | g8615.t4 | cds | g8615.t4.CDS17 | 31833043 | 31833225 |
| chr_2 | g8615 | g8615.t4 | exon | g8615.t4.exon18 | 31833285 | 31833485 |
| chr_2 | g8615 | g8615.t4 | cds | g8615.t4.CDS18 | 31833285 | 31833485 |
| chr_2 | g8615 | g8615.t4 | exon | g8615.t4.exon19 | 31833564 | 31833791 |
| chr_2 | g8615 | g8615.t4 | cds | g8615.t4.CDS19 | 31833564 | 31833791 |
| chr_2 | g8615 | g8615.t4 | exon | g8615.t4.exon20 | 31833856 | 31834042 |
| chr_2 | g8615 | g8615.t4 | cds | g8615.t4.CDS20 | 31833856 | 31834042 |
| chr_2 | g8615 | g8615.t4 | exon | g8615.t4.exon21 | 31834118 | 31834232 |
| chr_2 | g8615 | g8615.t4 | cds | g8615.t4.CDS21 | 31834118 | 31834232 |
| chr_2 | g8615 | g8615.t4 | exon | g8615.t4.exon22 | 31834300 | 31834451 |
| chr_2 | g8615 | g8615.t4 | cds | g8615.t4.CDS22 | 31834300 | 31834451 |
| chr_2 | g8615 | g8615.t4 | exon | g8615.t4.exon23 | 31834534 | 31834835 |
| chr_2 | g8615 | g8615.t4 | cds | g8615.t4.CDS23 | 31834534 | 31834835 |
| chr_2 | g8615 | g8615.t4 | exon | g8615.t4.exon24 | 31835151 | 31835345 |
| chr_2 | g8615 | g8615.t4 | cds | g8615.t4.CDS24 | 31835151 | 31835345 |
| chr_2 | g8615 | g8615.t4 | exon | g8615.t4.exon25 | 31835411 | 31835519 |
| chr_2 | g8615 | g8615.t4 | cds | g8615.t4.CDS25 | 31835411 | 31835519 |
| chr_2 | g8615 | g8615.t4 | exon | g8615.t4.exon26 | 31835676 | 31835993 |
| chr_2 | g8615 | g8615.t4 | cds | g8615.t4.CDS26 | 31835676 | 31835993 |
| chr_2 | g8615 | g8615.t4 | exon | g8615.t4.exon27 | 31836150 | 31836307 |
| chr_2 | g8615 | g8615.t4 | cds | g8615.t4.CDS27 | 31836150 | 31836307 |
| chr_2 | g8615 | g8615.t4 | exon | g8615.t4.exon28 | 31836367 | 31836988 |
| chr_2 | g8615 | g8615.t4 | cds | g8615.t4.CDS28 | 31836367 | 31836988 |
| chr_2 | g8615 | g8615.t4 | exon | g8615.t4.exon29 | 31837073 | 31837142 |
| chr_2 | g8615 | g8615.t4 | cds | g8615.t4.CDS29 | 31837073 | 31837142 |
| chr_2 | g8615 | g8615.t4 | exon | g8615.t4.exon30 | 31837233 | 31837336 |
| chr_2 | g8615 | g8615.t4 | cds | g8615.t4.CDS30 | 31837233 | 31837336 |
| chr_2 | g8615 | g8615.t4 | exon | g8615.t4.exon31 | 31837532 | 31839132 |
| chr_2 | g8615 | g8615.t4 | cds | g8615.t4.CDS31 | 31837532 | 31839132 |
| chr_2 | g8615 | g8615.t4 | TSS | g8615.t4 | NA | NA |
| chr_2 | g8615 | g8615.t4 | TTS | g8615.t4 | NA | NA |
Sequences
>g8615.t4 Gene=g8615 Length=10593
ATGGGAGCGAAAGGTAGTGTGGAAGCCGCAAAAATGAATGCAGATAACTGGGGTCATCTG
GAGCGCGGACGAAGTAGTCAGTACGGCGGCGGTTATCGTCACAATCAACGCTCACAATCA
TTAAATAGAGGACAGGCTCTTTCACGTGCAGAAGTCGGAGGACAATCGGGCTGCGCAAGT
TGTGCAATGGGAAACAAATTGAGCTGCTCGTGTGCGCCATTGATGCGTAAAGGTTATCGT
TATGAAGACTCACCGTGGCAAACATCTCGCCGTCGTGATGGGCATCTCCTGAGTGTATTT
AGGTTGTGGGCGGAAGTGTTTCATGTGGCTGCGAGTGGTGCTGGTCAAGTGAAATGGCAA
CAAGTGTCTGAGGATCTCGTGCCAGTCAACATCACATGCATACAGGATTCACCAGAATGT
GTGTTCCATATTACTGCTTATAATAGTCAAGTGGATAAAATTCTTGATGTTCGACTTGTT
CAACCTGGTACAAGAATTGGACAAGCATCAGAATGTTTCGTATATTGGAAAGATCCAATG
ACAAACGATACCTGGGGTCTAAATTTTACATCACCAATTGATGCGAAACAATTTAGGGAG
TGCTGTTCACCATCATTTAAATTCTCGCGCAAGGCATCATCAAGTTATTCACTAAAATTA
GATCCACCTGGAAAAGGCAAAGTGAAACCAAAACGTAAACCGTTAAGTACACCAGCAAGT
CCATCACGAGCACGTGAACCTCAATGTACTTGCATGACTGCTGAGCAATATGCTCGAATT
AAAGCACAAGATCCACGATATCGAGGCTCATCAACTTTACCTCGACCAACAACAAAAGCC
ACCGATACTGATTTAATGCGATCAGAAAAGCCTGTCACAACAGCATCAACGACATCACTT
TATGATAATGTAACATCAAGCAATCAAGGACAAGGACAAGAAACTTTACAACGTCAAAAA
TCAGACACGAGCACAATGACAAATATTTGTACAGCATCGGTTGGCACGCAGCAAAATCAT
GTTGGTTTACAAATAAGTCAGGATGATGCAAGTGATAAGAATGCACAACGTGAAGAGACT
TCAAAATCAGAAGGTACACAAGCTGGTGGAACATTACAAAATCAAAAGACAGCAGTAAAA
ACTTCAATTTCAACTGGAACGGGTACTCGCACTAAAGACTATAATGAGAATATTATGCAT
GAACATCAGATTACAAGTAGCAAACGTAACAAATCAAAGAGCACTGAAGATATGAATGTT
GATGCTGGAACACTCAAAAAGATGCTTAAACCACTTCATAACAACGAGAGTCCAGTGACA
TCACCTGAAATGGGTAGACGTCGCTACAATTACTACAATGCAGCTACAAACACAGCACCA
CATGGACATCAACATATTATACATAATAATCATTTCAATCATAATTCTATGTCACGTCAA
TCAAGCCAATCTTCACGTTTTTCTGGATCTCGATCATCACATGAGATTGGACGTGGATAT
CAACCACCACGTGGACTATATCTGGAATTGGAAAAGGAACGTTGCGGACTGGAAGGATCA
CCACCATCAGATAATGTAATGTTTGATAATCAATGTTATGCAACTACTCCAAGCTCAAGT
AATGGAAATTCTGATCAGGAACCTGGCGGCTATGGATCGGGAACTGGTCGACCAAGACAC
CATTCGCATCCTCATCAGCAGCAGCCAAATGTGACGCCAACACCGGGTTCACCGACATCA
CGTCTTTTACTCGAATATGAAATGCATTTGCGCAACACGCTGGCCAAAGGAATGGATGCA
GAATCATATAGTCTGCACACATTTGAAGCTCTATTATCACAAAGTATGGAAAATTTGGGA
TCATCCTCAAGTGCCAAATCTTCTACCCTACCTTTACCACATCGCTTAAATGTCGAGCAC
TCTTACATACCTAAAGAACGTGAACGTGATGGATATTATAGTGACCGCAATGAATTAATT
AGAGAAAGAGAACGCGAACGTGAGCGTGAACGTGGTTATTTAAGTGACCACAATTCAAGT
TATTCAACATCACGTTGCGCATCTTGCATTGGTGAATCTGCTCGTGCACAGTGGTTCCGT
CATTCGGGTGGCTGGCGCTCGGGTAGCTCAACACTTGGTTCGGGCACGAATTTGATCTCA
CAAAGCACAACTGGTCATCGACGTTCACCATGGGACTCATTGCCCTCGCTTAAACAGGAT
GGATCACTCAATGACTCAGGCTATAAAAGCAATCGCGCTGACTCGTTTGAACAACGAGGT
GTTTTTGATCGACAAGATAGCTTACGCTCAGATTATTTGAGTGATCGTGAAACTCGCTAT
GGAATTGTTCAGCAAGCATCAATAGATAGCACTGATTCCCGTTTGTGTTATCTTACTTCA
TCTGAGCAAACAGCTTCAACTGCATCATCAAATAATAATAGTGAATCAAACGATAAAAAT
AAATCACTAACACTCGATTGTTGTTGCGTCGTCGTTCAAATTACCCCTGGGGCAACGGGC
AAAGGATCGCAACAATCCGCAACTGTAGGCGATGGATCGAAAAAACATGGCGATGGGCTA
AGTAGTCGTGCGAATGGCGCGGCACCAATTTGTCGTTGCAGCAGTGCCGTTGCCAATCAT
ATTTCGTCACGATCAGATGATGCTGCTGCTTCCACTTCTTCAAATATTCCTGGTGGTGCA
ACAACTTCTACGCCATCAACGAGTCATAAATCCATGATGATGACTGGACAATCATTTGGT
GCCAAAAGTAGATCCGGTTCACTCGATCAACTGCTTTTCCTGACAGATCAACTCGCTGCA
CATACATTGCAGAGACAGGAAAACAGACATACGGGCCGTAGAGAAATTACAGCCGATGAT
TTATTTAATTATCTAAAAGACATCAATGGCGATCTTAAGTTTGTAGATAAAAAACGTTTA
GCTCAATTATTGTTACAAAATACTGAAGAAATGGTTGCACAACAACATCAATTACAACAG
CAGCAGCATCAGCAAAGTGTCACTGGTACCATACGAAAGCATACGCCAGTTAGTCGACAA
GAATCTGGTGGAGAGAAGCAGATTCATTTTGTCAATAATATCGGTCCAACACCACCGCCT
ACGAATCCAATCGATGCTCCAACAAAAAGCATTCTTCAAACATCGCGCAAGTCTAAATTT
AGTAGTGGAAATAAAGTTGAAATGCTTGATATTGCACAGCAGCAAAAAGAATTTAGTGAT
GAATGGCTTAATCGTTCTCATTCACAACGCATTTCATCGCGTTCTGTTGAAGTGTCTTCC
ACAATGCCAAAACCAGATCAAATTCAATCTAGCAAAAAGCATCATAAACATCATCAGCGG
CATTTTTCTGGTCCTGAAGATCTTGAAGCACTAAAAAAGGACATTGCACATTGGCTTGAA
CGACATCCATATAAGAAAGATGCTGCATTACTTGACCTTATTGAAACTGCTGCTAGACTT
AAACATGAAAAACATCAACATCCACAACAAGGCATAATGAAGCCAAAAACACTAATTAAA
AATGAATTTGCTGACATTATTCGTCCACCTTTGCCACAAAAGCAAAGATCACAGCAGCAG
CAACAGCCTCCTCCACTTCCAATGAAACAATTTCAACGACAAAAGTCAGCCGATGACCTG
CGTGTCCTTAAAAATAACATATTAGAATGGTTAACAAAACAACAGATTATGAATCAACAA
AGGTTACAATTACAACAGCAACAAATGGTGCCATTGAAAAGTGCCATAGTAGAGTCAAAA
GCAGGTGAGTCAGTCAAGTCACAGACGACAACTGCACCACCGCCATTGCCCCGTAAAACG
CACCAGAAGTTGCATAAACGTCATTCATTAGGTCCAAGTGATGAATCATCAGATTTTCAT
GAAATTCCACTTGATTGGATTCAAATTCCAATTGAAAAACTTAATAAAATGCGTGAAGTT
CAAAAGAGTTGTGCTGAAATTAGTCGTAAAGGAAGTGGCAAAGAACAAAAGTCCACACTT
CCATCATCGCATGAGCGAGCACATCATAGATCCGTTGAACGTAGGTTACGTCATTCAGCA
AGTGAAGTAGTTCAATCGAATGTAGATAGAAGTCATAAGATAATGCAACAGCAGCAACCG
CCAAGTCAAGTTCAATATCAATTAATTCAACATTCACAACAAATGCCTATGCAAGCTTCT
TCTTCTCAGCAGCAACAACAGCAAATTCAGCAGCAGCCACAATATCAAATAGTTCAACGC
TATCGCGAACCAACGAGAGTAGTAGCAGAACGTCATCATAGTCATGATCATCATAATGGC
CATCATTCGAGTGGTGAACAAAGAACATCGAAAAGGGATAAGCCCGCTAGGCATCATCGA
CAGACACAACGTTCTGCAACGACAAGTAATATGTTGCCAGGTCGACAACCAAGTAGTAGT
AGTCATGGAGGTGGCAGCAGTTCGCATCATAGCGTTGGAAGTGATCTTAAGGCAATTTAT
CAGTCAACAACTTCGCTTGTGCGTTGCGATGACCCTATGTGTCCACTGTTGCCTATTTGT
ACGGATCCAAACTGTTATTTGAATGCCAATTCACACTACGATACGCCACGACGTGCCTCA
TTACCACCGCGTTCAAATGAGATGCTACAGGATAGCGATATCTGTACAGATCCGCGTTGT
TGCGAGTCGCTTCCAATATGTACAGATCCTCGTTGCTGTGGCACGATTGCTCGCTCAAAA
TCAAAAGCCGCCATTGGCGTCAGTGCCCATCACAAATTCAAAAGCAATTCACTGCCGCGT
TGCGTTGAATCACAATCAACAAGACGCTCCGATCTCTTTTTATCGGGTTTATCAAAAGAC
GAATCGTACTCGTCACTCCCTAAATCTGCGACACTCTCGTCTGCCACTGCTCAAGCATCA
TCTGCACATAATAAGCCTATTACTGCTACTAACATAACTACAACAACTACTGCTAGTCAT
AGTAATAATAAAATAAATAATATTAATCATAGTCATAGTAAAACACGTGCACATCGCAAT
GGTAATAATAAGCTCATGAAATCGGCCTCGGCTGCGTCACTTAATTCACGCCGTCGTCGT
CATAAGACAGTTCATTTTGGCGAAAATTTGCTTCGCGAAGTTTGTCAAAATCGTCAGCTT
ATTAAACCGTTAACAGATCAGCCGTCCAATTCGTCGTCGACATTGCAGCCAAATATTCAA
ATGTTATATAATTTTGTAGAGGGTGTATTGAGTGCCTGGGTAGATGAAGAGGATGACGAT
AATATCAAATCGGGTCCCGATTCAGAACCTGAACGGGGTGCTATTTTAAAGCCCATGCAT
CGATGCAATAGGGCACGCTTACAAACAATTCGTCGTGTAGTTAATGAAGCGGCTGCTCTT
AAAGGCACTCTTAAACTTGGCAACTCACGCTATCGCCATCGACATTGGCGTGGCACAGCA
AAAGACTGTAATGAGCGATTTCTTCGGAAGATCAGCGACGATGATCGAATGAGTTTAACG
ACCGCAATATCTGATGAGGATGACGGTGAAAGCATCATGGCATCACCATATAAGGCAAAA
GCACAGGGTACAGCTTCAGCTTCATTTAATTGCACGGGTGCTGTACGAAAGGCAGGCTTT
TTATCAGTTAAAAAATGGCTATTGCGCAAAAAGCATCAAATTGAATTGGCTCGTAAACGC
GGCTGGAAGGGTTATTGGGTCTGTTTAAAAGGAACAACGTTGCTCTTCTATCCATGTGAT
TCGCGTGAGGGACGTTCAGTTGAAGCAGCACCAAAGCACTTAATCATAGTCGATGGCGCA
ATCATGCAGCCAATCCCCGAGCATCCCAAACGTGATTACATATTTTGCCTTAGCACCGCG
TTCGGAGATGCTTATTTGTTTCAAGCGCCATGTCAAGTGGAATTGGAAAATTGGGTCAAC
AGCATTCATTCAGCTTGTGCTGCAGCATTCGCACGTCATCGTGGCAAAACTGGAACATTG
CATTTACTACAAGAAGAAATTTTCCGTTTGGATAAAGCAATTGAATCGGATCACAAGCTG
AAACATATGGCTGATTTACAATCGAGTGTCGTCACCGACCAAGATACTAGAATTCAAATT
CAACAGCAGATTATTACATGGGAGGAAAATTTGGAACGCTTACATTGTGAGCAGTTCCGT
TTGCGTTGTTACATGGCTTCCTTACAATGTGGTGAATTACCAAATCCTAAATCATTGCTC
ACTCACGTCTCACGCCCTACAAAAAATACACTCAATAAGTTGGGCGTCTTTACGGTTTCA
TCATTCCATGCATTCATTTGTGCTCGTTCACCATCGCTTTTGAACAATTTGCTCGCAGGT
CGCGGTGCCACTAAACGTCGTCCACCGCTGTTATCACGTTCAAATAGCGGATCTAGTCGT
CGCTCTATGCAGATGAGCTCCCGTGATGATTCAGAAAAAAGTTATAACGTTCCACTACCA
GATAATAGCTATGTTACGGTATATTTACGTGAGAGTATGACAGTCGAAGAATTCTTGGCA
ACTGCATGTGTTAGAAAAAATCTTAATCCAATGGAACATTTTGTTCGTGTTAAGAAACGA
CGTGAAATGGAAGATCATAATTACTTTGTACCGCATCGAAATGATTTAATTGAAACTTAT
TTGCATACACATGAAATAGTCGAAGTTTGTGCAAAAATTTTATATCAAGTTGAACTTCAA
CGTTCAACATTAGAACAAATGTGGGGCTTCTCGGTCGAAGCTGAGCTAATTGAGAATGCC
GATCGTCAAGATGAATTATGTTGTTATGTTAGTCGTGTTGAGGATAAAAGTGTCGCTCTA
CAAAACGGTATTATTAAGGGAGATGAAATTATTGTTATCAATGGTGCCATTGTGTCCGAT
TTGGATATGATGTATTTAGAGAGTGTTTTGCAAGAAGAGCAAGCGTTATGCATGATGATG
AGATCATCACGAGTTGAACCACCAGATCTTACATGCATATTGCGTTCAACTGATGATATA
ATCGAATCTTTGGTATGTCCACCTCCACCAACTGATCCAGGCATGATGAGTGAAGAAATG
ATTACTGGATTAATTGTTCCTGCACCTAATTGGAAACGACCTGGCGTTGAACATCACGAT
TCTGTGACATCAGATCAGCAGCTCATTGACAGCAGTCGCCAAAAGGTGCAATCACGCACG
AGTAGCTTTGAGATAGAAAATTTGCTAAAGACGGCTGAGCAAGTGACAACATATTGCCGT
TCACCGCAAGAGACACGCAAATCGAGTCCCACTGGTTCTGTAACATCATCGGCAGCATCG
AACGCAGTCCTGACTCCATCACGTCAATTAACTGACGCAGAAAAATTGCGAAAAGTCATC
TTGGAATTAGTTGATACGGAACGAGCTTATGTTAAGCATTTGAACAATCTTCTTGAGCAC
TACTTGGAGCCATTGAAACGTGAAACTTTCCTCTCCAATGCTGAAATAACGGCTTTATTT
GGTAACATTCAGGAAATTGTCACATTCCAGCGTCAATTTTTACAAAATTTAGAAGAAGCC
TTAGAGATAGAGCCCGATTTCCACAGATTCGATCATTCTAGCCAATTCAGAAATGTTCTT
TTTGCTATTGGATCTGCATTTTTATACTACGTTAATCATTTCAAATTGTACTCTTCATTC
TGTGCAAGTCATAGTAAGGCACAGAAAGTTTTACATCCAAATGAAGGCAATCAAGCATTA
CAGGAATTTTTACTCTCTAAAAATCCAAGACAAGAACATAGCAGCACATTAGAATCATAT
CTCATAAAACCAATACAAAGAATTTTAAAATATCCCTTGTTGCTGCAGCAGTTGAAAAAT
CTAACTGATCCTTATGCAGAAGAGCATCAACATCTTATTGAAGCTTTAAAAGGAATGGAA
AAAGTTGCAGAACATATTAATGAAATGCAGCGAATTCATGAAGAATATGGTGCAATATTT
GATCATCTTTTTAGACAGCATCAAAAGTCTTGCAAACAACCAATTGATCTTAGTCCAGGT
GACTTGCTATATTATGGTGGAGTCGAATGGCTCAACATTTCGGACTTCCTTGGTAAAATT
AAAAAGGGATTAGAATTGCATGCCATGTGCTTTGTCTTCAAATCAGCAGTTGTCTTCCTA
TGTAAAGAGCGTCTTCGTCAAAAGAAAAAATTAATGGGCGTATCAAATAAAAATGCTCCC
AATGAGGTTGAAATTATTCGCTATCAAGTTCTAATTCCGGTCACTGAAGTGCAAGTTCGT
GCGTCCTCGGCAAAGGACATGGATTCGCATTTCCTTTGGGAATTAATTCATTTACGTTCG
CAACTACAACGACGCTCAGAAAAGGTCTATGTTTTATCAAATAGTACAGCTGACTTCCGA
AATGCATTCCTTAAAACAATTCGTCAAATCATTCGTGAAAGTGTTCGTAATATGTCGATT
CCAATTAAAGAACGTGGCAGTATCAGTTCAGTTTCTTCTGCTGGCGGTGGTCCACACTTT
TCTGGCAATTCACAAACATTAGAGCGACCAAAGCAGACATCGAGCATTCAGCAAGGCTCA
CAGACTCTTGGAAAGCCAAAGAAAAAGAATAATCAACGACTTAGTGCTGGTAATATCGAT
TATGACAATCTTCATGGTAGTTCACAAGAGCACGACTATGGTATGGAACAAGAAGAGGCA
CCACCAATCTTTAGAATCCGCAGTAAAACTGTTGGTGATGATGGCGGACCACCACCCGTC
CCAAAAAGAACGACATCAGAATTGACTACAGAAAAAGATCCGGGTATAAAATCAGAAGGT
GAAGATGAATCTCTTATGGGTCATAGATCGAAATCTTTGGGCCGAACACCTAATCATTTA
ACTTTAAGCACGACATCAACGCTCTCGGTTGGAAGTACTGGTAGCCAAGCGCGTTTGATT
CAATCTTCTCACGCGCCATCGCATTATCAGCCTGTTTTAATGAAAGATTTAGGTAAGACA
TCTTCAACCGATTCGGGAGAATCGATAAGTTTTCACACAGAAAAATCATCAGACTCAACC
TCGGGCGTTGACGTTAATGATGATAACTATCAGTTGACGGACGAGATTGTTGATAAGCAT
TTGGATGATTTGAAAAAGGAATGTTTGTCATATGAGACACGTGATGTGGCAAAGTTCATG
GAAAAGCTTAAGACGCAATCGGAATCTTTGGATGGCGGTGATGGCAGTCAAGATGAGAAG
AAGGCCGAGATTGTTGCATTGGAAAAGAAATCAGCTCGTCGTGAGTCAGAATCAAGAAAA
GAATTGGAAATAATGATGAAGCAAAAAGAAGAAAAAGGAAAACGAGACTCAACTTCATCA
ATTAAATCGCATAGAAAATCTTCATCATCATCACCGACATTGAGAAAACCAAAAACCATC
GATATGGATGCGACTTCACATTTGTCACCTACAAGACAACAAATTGACAGCAGTCAGGTA
CAAATTATTAAGATAAAATCGCCAAGTGGCAGTCGTAGACCATCACGTGAAGCATCGCGT
AATAATTCAGTTGAACGTTCACCCTCAAGGGAAATGCAACAACAGCAAACATTAAAGAAA
CCTGAAGGTGGTATTTTAAAGAAACCATCACCTAAATTTGGCAAAGCGAGTGAATATAAA
TTGTCAAATAGTTTAAGACCAGACAGTTTCATCAGTCCATTTAGCAGCTTTGAATCTAAA
AGCGACAAACTTTCACCATCATCTGAAATATTGCCAACATTCTGTGCAAAAGAAGCACAA
AAGCGTGCTTCATTATCTGACTATGAAAGAGATCCACAAGACTATCATCATCAGGCAATG
AAATCGAGATCTTTAGAAAGCAGCTTGGAGCATTTAAAATCAGCATTGAAGCATCAAAGC
AGCTATGAACAGCAACAACCATATTGTTTGTCACCAATGCATGATCCAAATCGATACTAT
AACTTGTCAGCTCAACATTCAATTGAATCAAATCGATCACCAGTTCGTTATTGTTCACCA
GTTCCACCACATTATTATAATGAACCATTTTATGAATATCCAAGACATAAAGCAAGACAA
CGTGAATCTCGTTCACTTGAACGACCTGATTTTTCACGTCAAAGTTCATCAGAATATGAA
AGATATTATGAGGAACCACCACCTTATTCTCATCATCATGATGAACAACGTACAAGACGT
CATAGTGTCTATGAACATCGTTCAATTCCCTATCATTACTATTCAATGTCACCCGATGAC
TATCTTATGTCGGCCTCTTCTCATTACGAACAACCATCAGCTTGTGTCGATTGCTATTAT
CAAACGTATCGACAACCATCGCATTTGCATCACTATACACAACAACCACCGCCCTTACCA
AAGCGCAATTCATCATCATCATCACAACAGCAGCAGCAACAATCTAAAAGTCCATCGCAA
TCACGTCAACGTCAATCGCGGTCTCGTAAAAAACTCTCGCGTCGAATGTCTTCCAATTAT
TTCAATAAATCCTTTGACGATGATGAAAATATGAATAGCAGCGGCACTTCATCCAACAAG
CCAATGCACGATAATGAAGAGATTCGTGTTTAA
>g8615.t4 Gene=g8615 Length=3530
MGAKGSVEAAKMNADNWGHLERGRSSQYGGGYRHNQRSQSLNRGQALSRAEVGGQSGCAS
CAMGNKLSCSCAPLMRKGYRYEDSPWQTSRRRDGHLLSVFRLWAEVFHVAASGAGQVKWQ
QVSEDLVPVNITCIQDSPECVFHITAYNSQVDKILDVRLVQPGTRIGQASECFVYWKDPM
TNDTWGLNFTSPIDAKQFRECCSPSFKFSRKASSSYSLKLDPPGKGKVKPKRKPLSTPAS
PSRAREPQCTCMTAEQYARIKAQDPRYRGSSTLPRPTTKATDTDLMRSEKPVTTASTTSL
YDNVTSSNQGQGQETLQRQKSDTSTMTNICTASVGTQQNHVGLQISQDDASDKNAQREET
SKSEGTQAGGTLQNQKTAVKTSISTGTGTRTKDYNENIMHEHQITSSKRNKSKSTEDMNV
DAGTLKKMLKPLHNNESPVTSPEMGRRRYNYYNAATNTAPHGHQHIIHNNHFNHNSMSRQ
SSQSSRFSGSRSSHEIGRGYQPPRGLYLELEKERCGLEGSPPSDNVMFDNQCYATTPSSS
NGNSDQEPGGYGSGTGRPRHHSHPHQQQPNVTPTPGSPTSRLLLEYEMHLRNTLAKGMDA
ESYSLHTFEALLSQSMENLGSSSSAKSSTLPLPHRLNVEHSYIPKERERDGYYSDRNELI
RERERERERERGYLSDHNSSYSTSRCASCIGESARAQWFRHSGGWRSGSSTLGSGTNLIS
QSTTGHRRSPWDSLPSLKQDGSLNDSGYKSNRADSFEQRGVFDRQDSLRSDYLSDRETRY
GIVQQASIDSTDSRLCYLTSSEQTASTASSNNNSESNDKNKSLTLDCCCVVVQITPGATG
KGSQQSATVGDGSKKHGDGLSSRANGAAPICRCSSAVANHISSRSDDAAASTSSNIPGGA
TTSTPSTSHKSMMMTGQSFGAKSRSGSLDQLLFLTDQLAAHTLQRQENRHTGRREITADD
LFNYLKDINGDLKFVDKKRLAQLLLQNTEEMVAQQHQLQQQQHQQSVTGTIRKHTPVSRQ
ESGGEKQIHFVNNIGPTPPPTNPIDAPTKSILQTSRKSKFSSGNKVEMLDIAQQQKEFSD
EWLNRSHSQRISSRSVEVSSTMPKPDQIQSSKKHHKHHQRHFSGPEDLEALKKDIAHWLE
RHPYKKDAALLDLIETAARLKHEKHQHPQQGIMKPKTLIKNEFADIIRPPLPQKQRSQQQ
QQPPPLPMKQFQRQKSADDLRVLKNNILEWLTKQQIMNQQRLQLQQQQMVPLKSAIVESK
AGESVKSQTTTAPPPLPRKTHQKLHKRHSLGPSDESSDFHEIPLDWIQIPIEKLNKMREV
QKSCAEISRKGSGKEQKSTLPSSHERAHHRSVERRLRHSASEVVQSNVDRSHKIMQQQQP
PSQVQYQLIQHSQQMPMQASSSQQQQQQIQQQPQYQIVQRYREPTRVVAERHHSHDHHNG
HHSSGEQRTSKRDKPARHHRQTQRSATTSNMLPGRQPSSSSHGGGSSSHHSVGSDLKAIY
QSTTSLVRCDDPMCPLLPICTDPNCYLNANSHYDTPRRASLPPRSNEMLQDSDICTDPRC
CESLPICTDPRCCGTIARSKSKAAIGVSAHHKFKSNSLPRCVESQSTRRSDLFLSGLSKD
ESYSSLPKSATLSSATAQASSAHNKPITATNITTTTTASHSNNKINNINHSHSKTRAHRN
GNNKLMKSASAASLNSRRRRHKTVHFGENLLREVCQNRQLIKPLTDQPSNSSSTLQPNIQ
MLYNFVEGVLSAWVDEEDDDNIKSGPDSEPERGAILKPMHRCNRARLQTIRRVVNEAAAL
KGTLKLGNSRYRHRHWRGTAKDCNERFLRKISDDDRMSLTTAISDEDDGESIMASPYKAK
AQGTASASFNCTGAVRKAGFLSVKKWLLRKKHQIELARKRGWKGYWVCLKGTTLLFYPCD
SREGRSVEAAPKHLIIVDGAIMQPIPEHPKRDYIFCLSTAFGDAYLFQAPCQVELENWVN
SIHSACAAAFARHRGKTGTLHLLQEEIFRLDKAIESDHKLKHMADLQSSVVTDQDTRIQI
QQQIITWEENLERLHCEQFRLRCYMASLQCGELPNPKSLLTHVSRPTKNTLNKLGVFTVS
SFHAFICARSPSLLNNLLAGRGATKRRPPLLSRSNSGSSRRSMQMSSRDDSEKSYNVPLP
DNSYVTVYLRESMTVEEFLATACVRKNLNPMEHFVRVKKRREMEDHNYFVPHRNDLIETY
LHTHEIVEVCAKILYQVELQRSTLEQMWGFSVEAELIENADRQDELCCYVSRVEDKSVAL
QNGIIKGDEIIVINGAIVSDLDMMYLESVLQEEQALCMMMRSSRVEPPDLTCILRSTDDI
IESLVCPPPPTDPGMMSEEMITGLIVPAPNWKRPGVEHHDSVTSDQQLIDSSRQKVQSRT
SSFEIENLLKTAEQVTTYCRSPQETRKSSPTGSVTSSAASNAVLTPSRQLTDAEKLRKVI
LELVDTERAYVKHLNNLLEHYLEPLKRETFLSNAEITALFGNIQEIVTFQRQFLQNLEEA
LEIEPDFHRFDHSSQFRNVLFAIGSAFLYYVNHFKLYSSFCASHSKAQKVLHPNEGNQAL
QEFLLSKNPRQEHSSTLESYLIKPIQRILKYPLLLQQLKNLTDPYAEEHQHLIEALKGME
KVAEHINEMQRIHEEYGAIFDHLFRQHQKSCKQPIDLSPGDLLYYGGVEWLNISDFLGKI
KKGLELHAMCFVFKSAVVFLCKERLRQKKKLMGVSNKNAPNEVEIIRYQVLIPVTEVQVR
ASSAKDMDSHFLWELIHLRSQLQRRSEKVYVLSNSTADFRNAFLKTIRQIIRESVRNMSI
PIKERGSISSVSSAGGGPHFSGNSQTLERPKQTSSIQQGSQTLGKPKKKNNQRLSAGNID
YDNLHGSSQEHDYGMEQEEAPPIFRIRSKTVGDDGGPPPVPKRTTSELTTEKDPGIKSEG
EDESLMGHRSKSLGRTPNHLTLSTTSTLSVGSTGSQARLIQSSHAPSHYQPVLMKDLGKT
SSTDSGESISFHTEKSSDSTSGVDVNDDNYQLTDEIVDKHLDDLKKECLSYETRDVAKFM
EKLKTQSESLDGGDGSQDEKKAEIVALEKKSARRESESRKELEIMMKQKEEKGKRDSTSS
IKSHRKSSSSSPTLRKPKTIDMDATSHLSPTRQQIDSSQVQIIKIKSPSGSRRPSREASR
NNSVERSPSREMQQQQTLKKPEGGILKKPSPKFGKASEYKLSNSLRPDSFISPFSSFESK
SDKLSPSSEILPTFCAKEAQKRASLSDYERDPQDYHHQAMKSRSLESSLEHLKSALKHQS
SYEQQQPYCLSPMHDPNRYYNLSAQHSIESNRSPVRYCSPVPPHYYNEPFYEYPRHKARQ
RESRSLERPDFSRQSSSEYERYYEEPPPYSHHHDEQRTRRHSVYEHRSIPYHYYSMSPDD
YLMSASSHYEQPSACVDCYYQTYRQPSHLHHYTQQPPPLPKRNSSSSSQQQQQQSKSPSQ
SRQRQSRSRKKLSRRMSSNYFNKSFDDDENMNSSGTSSNKPMHDNEEIRV
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 23 | g8615.t4 | CDD | cd01230 | PH1_Tiam1_2 | 1873 | 1998 | 1.13913E-79 |
| 24 | g8615.t4 | CDD | cd00992 | PDZ_signaling | 2234 | 2312 | 4.76705E-7 |
| 22 | g8615.t4 | CDD | cd00160 | RhoGEF | 2456 | 2647 | 3.25991E-54 |
| 21 | g8615.t4 | CDD | cd01255 | PH2_Tiam1_2 | 2650 | 2821 | 7.03159E-96 |
| 19 | g8615.t4 | Coils | Coil | Coil | 3092 | 3112 | - |
| 20 | g8615.t4 | Coils | Coil | Coil | 3530 | 3530 | - |
| 15 | g8615.t4 | Gene3D | G3DSA:2.30.29.30 | - | 97 | 211 | 2.3E-19 |
| 14 | g8615.t4 | Gene3D | G3DSA:2.30.29.30 | - | 1870 | 1996 | 8.7E-32 |
| 18 | g8615.t4 | Gene3D | G3DSA:2.30.42.10 | - | 2229 | 2324 | 1.5E-7 |
| 17 | g8615.t4 | Gene3D | G3DSA:1.20.900.10 | - | 2446 | 2648 | 2.7E-70 |
| 16 | g8615.t4 | Gene3D | G3DSA:2.30.29.30 | - | 2650 | 2812 | 4.3E-70 |
| 52 | g8615.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 217 | 324 | - |
| 68 | g8615.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 270 | 324 | - |
| 54 | g8615.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 345 | 388 | - |
| 34 | g8615.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 361 | 388 | - |
| 48 | g8615.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 475 | 495 | - |
| 50 | g8615.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 475 | 504 | - |
| 44 | g8615.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 536 | 577 | - |
| 47 | g8615.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 536 | 550 | - |
| 56 | g8615.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 712 | 753 | - |
| 70 | g8615.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 712 | 761 | - |
| 39 | g8615.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 840 | 861 | - |
| 63 | g8615.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 888 | 911 | - |
| 72 | g8615.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1080 | 1125 | - |
| 38 | g8615.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1085 | 1107 | - |
| 42 | g8615.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1192 | 1214 | - |
| 65 | g8615.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1192 | 1209 | - |
| 41 | g8615.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1260 | 1297 | - |
| 33 | g8615.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1261 | 1276 | - |
| 43 | g8615.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1325 | 1415 | - |
| 61 | g8615.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1325 | 1360 | - |
| 62 | g8615.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1361 | 1415 | - |
| 37 | g8615.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1429 | 1493 | - |
| 71 | g8615.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1429 | 1452 | - |
| 69 | g8615.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1462 | 1493 | - |
| 36 | g8615.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 2125 | 2154 | - |
| 64 | g8615.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 2129 | 2154 | - |
| 40 | g8615.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 2419 | 2441 | - |
| 66 | g8615.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 2827 | 2872 | - |
| 67 | g8615.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 2909 | 3028 | - |
| 58 | g8615.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 2926 | 2949 | - |
| 59 | g8615.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 2954 | 2988 | - |
| 49 | g8615.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 2996 | 3028 | - |
| 35 | g8615.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 3066 | 3122 | - |
| 60 | g8615.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 3066 | 3222 | - |
| 53 | g8615.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 3144 | 3169 | - |
| 32 | g8615.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 3170 | 3184 | - |
| 55 | g8615.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 3185 | 3200 | - |
| 73 | g8615.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 3261 | 3286 | - |
| 57 | g8615.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 3262 | 3286 | - |
| 74 | g8615.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 3356 | 3401 | - |
| 45 | g8615.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 3452 | 3530 | - |
| 51 | g8615.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 3452 | 3482 | - |
| 46 | g8615.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 3497 | 3521 | - |
| 5 | g8615.t4 | PANTHER | PTHR46001 | TIAM (MAMMALIAN TUMOR INVASION AND METASTASIS FACTOR) HOMOLOG | 136 | 615 | 0.0 |
| 7 | g8615.t4 | PANTHER | PTHR46001:SF3 | PROTEIN STILL LIFE, ISOFORM SIF TYPE 1 | 136 | 615 | 0.0 |
| 6 | g8615.t4 | PANTHER | PTHR46001 | TIAM (MAMMALIAN TUMOR INVASION AND METASTASIS FACTOR) HOMOLOG | 967 | 3020 | 0.0 |
| 8 | g8615.t4 | PANTHER | PTHR46001:SF3 | PROTEIN STILL LIFE, ISOFORM SIF TYPE 1 | 967 | 3020 | 0.0 |
| 3 | g8615.t4 | Pfam | PF00169 | PH domain | 1885 | 1986 | 2.0E-12 |
| 2 | g8615.t4 | Pfam | PF18385 | T-lymphoma invasion and metastasis CC-Ex domain | 2014 | 2109 | 6.9E-11 |
| 4 | g8615.t4 | Pfam | PF02196 | Raf-like Ras-binding domain | 2157 | 2227 | 2.2E-14 |
| 1 | g8615.t4 | Pfam | PF00621 | RhoGEF domain | 2459 | 2647 | 1.7E-42 |
| 31 | g8615.t4 | ProSitePatterns | PS00741 | Dbl homology (DH) domain signature. | 2597 | 2622 | - |
| 77 | g8615.t4 | ProSiteProfiles | PS50229 | WH1 domain profile. | 91 | 209 | 21.415 |
| 79 | g8615.t4 | ProSiteProfiles | PS50003 | PH domain profile. | 1874 | 1987 | 11.281 |
| 75 | g8615.t4 | ProSiteProfiles | PS50898 | Ras-binding domain (RBD) profile. | 2153 | 2220 | 19.905 |
| 78 | g8615.t4 | ProSiteProfiles | PS50106 | PDZ domain profile. | 2236 | 2312 | 10.094 |
| 76 | g8615.t4 | ProSiteProfiles | PS50010 | Dbl homology (DH) domain profile. | 2455 | 2649 | 35.119 |
| 30 | g8615.t4 | SMART | SM00461 | WH1_2 | 97 | 206 | 1.5E-40 |
| 28 | g8615.t4 | SMART | SM00233 | PH_update | 1875 | 1989 | 1.6E-14 |
| 29 | g8615.t4 | SMART | SM00455 | RBD_5 | 2153 | 2220 | 1.8E-15 |
| 25 | g8615.t4 | SMART | SM00228 | pdz_new | 2246 | 2324 | 4.3E-5 |
| 26 | g8615.t4 | SMART | SM00325 | RhoGEF_3 | 2459 | 2648 | 1.9E-57 |
| 27 | g8615.t4 | SMART | SM00233 | PH_update | 2691 | 2814 | 0.14 |
| 9 | g8615.t4 | SUPERFAMILY | SSF50729 | PH domain-like | 98 | 208 | 1.28E-22 |
| 11 | g8615.t4 | SUPERFAMILY | SSF50729 | PH domain-like | 1877 | 1985 | 1.81E-17 |
| 12 | g8615.t4 | SUPERFAMILY | SSF50156 | PDZ domain-like | 2232 | 2322 | 1.86E-7 |
| 13 | g8615.t4 | SUPERFAMILY | SSF48065 | DBL homology domain (DH-domain) | 2453 | 2660 | 3.93E-51 |
| 10 | g8615.t4 | SUPERFAMILY | SSF50729 | PH domain-like | 2655 | 2818 | 4.98E-63 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0090630 | activation of GTPase activity | BP |
| GO:0007165 | signal transduction | BP |
| GO:0005515 | protein binding | MF |
| GO:0007264 | small GTPase mediated signal transduction | BP |
| GO:0035556 | intracellular signal transduction | BP |
| GO:0005085 | guanyl-nucleotide exchange factor activity | MF |
KEGG
Orthology
- This transcript has been annotated with K05731 (T-lymphoma invasion and metastasis-inducing protein 1)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed