General information for g8615.t7
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Protein still life, isoform SIF type 1.
Parent gene
- The parent gene g8615 is located on chr_2: 31808260..31839132 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8615 | g8615.t7 | isoform | g8615.t7 | 31808260 | 31810191 |
| chr_2 | g8615 | g8615.t7 | exon | g8615.t7.exon1 | 31808260 | 31808795 |
| chr_2 | g8615 | g8615.t7 | cds | g8615.t7.CDS1 | 31808490 | 31808795 |
| chr_2 | g8615 | g8615.t7 | exon | g8615.t7.exon2 | 31809925 | 31810191 |
| chr_2 | g8615 | g8615.t7 | cds | g8615.t7.CDS2 | 31809925 | 31810008 |
| chr_2 | g8615 | g8615.t7 | TSS | g8615.t7 | NA | NA |
| chr_2 | g8615 | g8615.t7 | TTS | g8615.t7 | NA | NA |
Sequences
>g8615.t7 Gene=g8615 Length=803
TGACCGCAATGAATTAATTAGAGAAAGAGAACGCGAACGTGAGCGTGAACGTGGTTATTT
AAGTGACCACAATTCAAGGTAAGTAATTTTTTTCAATATAGTTTGCCTGCCACAATTGTT
GTGTCTTGTGTTGCCTTTACACCACCTATTTGCTGTTACTGTTATTTCTCTATGTTAATT
ATATTCAATTATTCCTTTGATTCACCCTCTTCTCTTCTCGATATGTATATATGAAAAGTT
ATTCAACATCACGTTGCGCATCTTGCATTGGTGAATCTGCTCGTGCACAGTGGTTCCGTC
ATTCGGGTGGCTGGCGCTCGGGTAGCTCAACACTTGGTTCGGGCACGAATTTGATCTCAC
AAAGCACAACTGGTCATCGACGTTCACCATGGGACTCATTGCCCTCGCTTAAACAGGATG
GATCACTCAATGACTCAGGCTATAAAAGCAATCGCGCTGACTCGTTTGAACAACGGTTAG
AACTTCCATCGTTTAACTTTTTAAACTTCATTTTCTTCACTCTCTGCTTGCTATCGATTG
AATTGGTAATTAACGTAGTTCCTCCTTCAACAATCTCCATTATCATCATTCGACACACAA
AATTCTTTCTTTCCAAATAAATATTCTCATCACTTTCTTATTCATGTTTATGTTTCATAA
ATTATGTAATCAATTTTCTTTTTCTATCACTCAAATTACTTGATTGAAGACACGAGTTAA
ATCCTTATAAAAACACTGGTCTATTTAATTTTATTTCAAAAAGATTCTGTAGGATTTTAA
TTTGTAAACAAAAATTTTGTAAT
>g8615.t7 Gene=g8615 Length=129
MKSYSTSRCASCIGESARAQWFRHSGGWRSGSSTLGSGTNLISQSTTGHRRSPWDSLPSL
KQDGSLNDSGYKSNRADSFEQRLELPSFNFLNFIFFTLCLLSIELVINVVPPSTISIIII
RHTKFFLSK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g8615.t7 | MobiDBLite | mobidb-lite | consensus disorder prediction | 29 | 68 | - |
| 4 | g8615.t7 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 92 | - |
| 5 | g8615.t7 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 93 | 120 | - |
| 3 | g8615.t7 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 121 | 129 | - |
| 1 | g8615.t7 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 88 | 110 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed