Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g862 g862.t1 isoform g862.t1 6556681 6557931
chr_3 g862 g862.t1 exon g862.t1.exon1 6556681 6557931
chr_3 g862 g862.t1 cds g862.t1.CDS1 6556681 6557931
chr_3 g862 g862.t1 TSS g862.t1 NA NA
chr_3 g862 g862.t1 TTS g862.t1 NA NA

Sequences

>g862.t1 Gene=g862 Length=1251
ATGGAACAACAAGTAAAATGCAATTTTTTCAAATTTAAATGGCATCACATAGGAGAAATA
TACACATGTCTTATTCAACATCAAGAAATAGGAAGTCAATCGAGTTTAAAACTTGTTGGT
GTTCATAGTTTTAATAAAAACAATGAAGATGTATTTGGAGCTTCTTTTAAAAACTGTAAA
ATATCAAACATTCCAAAAGGACTTATGAAAATTTTTCCTAACTTAACATGTATGGCTATT
TATGACTCCGAATTAAAAAGTATTTCACGTGATGATCTAAAAGAGTATAAAAATTTAAAA
TGTCTATTAGTGAATCGAAATAACATTGCATATTTACCTGGTGATTTATTTCAAGATTTA
AAAGAATTAGAAATTTTCTCTGCATTTGATTCAAAAATTGAATTGATTGAACCAAATATT
TTCGACAATTGCCATAATTTAAAGCATGTTAGTTTAACTAGGAATATTTGCATCAATAAA
CACTTTAATTTAGGTAATCCTATATTACATAATGCAACACTTGAAGAAATCAAAATTGAA
TTGCAAAATATTTATCCAGTATGGGGAGAAAAAGTGAAGATTTTCAACGGAGAAATCACA
TCTGAAATCTTAAAACTAATAAAAGAATTGGAAGAAAAAAAAGAAAGCAATAAAAATATT
AAAATTTTGGAGCAGAAACTATCTGAAATCAAGTTAAAGTTTAGCTACTTTGAAAATATA
ATGAGAAATGAAGAACTAAAAGATTTCACTATCAAAACTGAATTTGAAGAATTTAAAGCT
CACAAATTTGTGTTAGCAGCTCGTAGTCCAACTTTTGCTGATCTCATCATAGAGAATGTT
CATGCTGAATGTTTGAATTTACTTGATGTCTCAACTGATGTTTTTCGAGTCATTTTAGAT
TTCATTTACACTGATGAATTTCCTGAAAATATTGACATCAACTTTGGTGAGCTTTTTTTT
GCAAGTGAGCGATTAAAACTTGAAAATTTAAAAAAAATTGCTGCAAAGAAACTGTTGGAT
ACAACAAACACTGAAAACGCGTTAGAAATGTTGGAATTCAGCTTAAAAACTAACAACGAA
GAATTAAAGAAAAAATCATTTGAAGAAATCAAAAAATATTTAGACTTCATTAAATTAGAT
GAAAATTTAGCATTTGAACCAGAAAAACTCAAAAAGTTGATTGAAGTCCAAAAGGAAAAG
GAAAGATTTATGAGAGAATTTGAAGAAAGTGTTAAAAATATTCTTATATAA

>g862.t1 Gene=g862 Length=416
MEQQVKCNFFKFKWHHIGEIYTCLIQHQEIGSQSSLKLVGVHSFNKNNEDVFGASFKNCK
ISNIPKGLMKIFPNLTCMAIYDSELKSISRDDLKEYKNLKCLLVNRNNIAYLPGDLFQDL
KELEIFSAFDSKIELIEPNIFDNCHNLKHVSLTRNICINKHFNLGNPILHNATLEEIKIE
LQNIYPVWGEKVKIFNGEITSEILKLIKELEEKKESNKNIKILEQKLSEIKLKFSYFENI
MRNEELKDFTIKTEFEEFKAHKFVLAARSPTFADLIIENVHAECLNLLDVSTDVFRVILD
FIYTDEFPENIDINFGELFFASERLKLENLKKIAAKKLLDTTNTENALEMLEFSLKTNNE
ELKKKSFEEIKKYLDFIKLDENLAFEPEKLKKLIEVQKEKERFMREFEESVKNILI

Protein features from InterProScan

Transcript Database ID Name Start End E.value
9 g862.t1 CDD cd18186 BTB_POZ_ZBTB_KLHL-like 248 325 3.98296E-18
8 g862.t1 Coils Coil Coil 206 233 -
6 g862.t1 Gene3D G3DSA:3.80.10.10 Ribonuclease Inhibitor 3 176 6.7E-14
7 g862.t1 Gene3D G3DSA:3.30.710.10 Potassium Channel Kv1.1; Chain A 211 373 6.2E-28
2 g862.t1 PANTHER PTHR26379:SF309 OS02G0311150 PROTEIN 235 378 2.1E-18
3 g862.t1 PANTHER PTHR26379 BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 235 378 2.1E-18
1 g862.t1 Pfam PF00651 BTB/POZ domain 238 339 3.0E-17
11 g862.t1 ProSiteProfiles PS50097 BTB domain profile. 247 311 15.659
10 g862.t1 SMART SM00225 BTB_4 247 342 7.6E-15
4 g862.t1 SUPERFAMILY SSF52058 L domain-like 56 175 2.18E-14
5 g862.t1 SUPERFAMILY SSF54695 POZ domain 235 340 1.1E-19

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005515 protein binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed