General information for g8628.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Copper-transporting ATPase 1.
Parent gene
- The parent gene g8628 is located on chr_2: 31923536..31924927 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8628 | g8628.t1 | isoform | g8628.t1 | 31917750 | 31923041 |
| chr_2 | g8628 | g8628.t1 | exon | g8628.t1.exon1 | 31917750 | 31917849 |
| chr_2 | g8628 | g8628.t1 | cds | g8628.t1.CDS1 | 31917750 | 31917849 |
| chr_2 | g8628 | g8628.t1 | exon | g8628.t1.exon2 | 31918612 | 31918835 |
| chr_2 | g8628 | g8628.t1 | cds | g8628.t1.CDS2 | 31918612 | 31918835 |
| chr_2 | g8628 | g8628.t1 | exon | g8628.t1.exon3 | 31918896 | 31919074 |
| chr_2 | g8628 | g8628.t1 | cds | g8628.t1.CDS3 | 31918896 | 31919074 |
| chr_2 | g8628 | g8628.t1 | exon | g8628.t1.exon4 | 31919131 | 31919413 |
| chr_2 | g8628 | g8628.t1 | cds | g8628.t1.CDS4 | 31919131 | 31919413 |
| chr_2 | g8628 | g8628.t1 | exon | g8628.t1.exon5 | 31919471 | 31919638 |
| chr_2 | g8628 | g8628.t1 | cds | g8628.t1.CDS5 | 31919471 | 31919638 |
| chr_2 | g8628 | g8628.t1 | exon | g8628.t1.exon6 | 31919706 | 31920239 |
| chr_2 | g8628 | g8628.t1 | cds | g8628.t1.CDS6 | 31919706 | 31920239 |
| chr_2 | g8628 | g8628.t1 | exon | g8628.t1.exon7 | 31920466 | 31922557 |
| chr_2 | g8628 | g8628.t1 | cds | g8628.t1.CDS7 | 31920466 | 31922557 |
| chr_2 | g8628 | g8628.t1 | exon | g8628.t1.exon8 | 31923001 | 31923041 |
| chr_2 | g8628 | g8628.t1 | cds | g8628.t1.CDS8 | 31923001 | 31923041 |
| chr_2 | g8628 | g8628.t1 | TSS | g8628.t1 | 31923330 | 31923330 |
| chr_2 | g8628 | g8628.t1 | TTS | g8628.t1 | NA | NA |
Sequences
>g8628.t1 Gene=g8628 Length=3621
ATGAATTCAAGGCAAGAAGAAAGGGAATTTTTACTACAACGTGATGCAATGGAAGAAGAT
CAAAGTCTTTTAGATTTTCATGATACTGGTTCAACCAGTATCAATATTTATGGAATGAAG
TGCCAAAATTGTGTTCGAAAAATTGAAGAAAATATGCAAAAAGAAATTGGAGTTTTGCAA
ATTAAAGTTTATTTAGAAGAGAAACGAGCACAAATAGAATATGATAAACATGTGACAAAT
CCATTAGCATTGACAGCAGCAATTAAAAAATTGGGATTTCATACAAATCCAGATGATTTG
AAGAAAATTAAAGAATCAACTGTTTTCATAAATGGAATGAAGTGTAATAATTGTGTGAAT
AAAATTGAATCTTCAATAAAAGAAAAGAAAGGAATTGAGAAAATAAGTGTCGATTTGGCT
AATAAAAGTGCAATAGTGAAATATGATGAGTCAGCGACTAATTTAAGTGAAATTTTATCT
CAAATAATTCAGTTGGGTTTTAAAGCCAGTGATTCGCCATTTGATGAGAACATTGAAACT
CAAAATGACTTAATTATAAATTTACCAGTGACTACAAACGGCAGTATCGAAAAAAATGAT
AAATTAATAAGAAAAGGACACTTTCATGTACAAGGAATGACTTGTGCGAGTTGTGTATCA
GCAATTGAAAAACATTGCATGAAACTCAAAGGAGTTGAGACTGTTTTAATTTCTCTACTC
GGTGCAAAAGCTGAAATTTCATATGATGAGAATTTAATTGATGAAAATGAAATTGCAGCA
TCTTTAAGTAGTTTAGGATTTCCAACAGAAGTCATTTATGAGCCAGAAGCAGGAATAAGT
AGTATAGAAATTGAAATTCATGGAATGAGTTGTTCTTCATGTGTTAATAAAATTGAACAA
GCTGTACTAAAAATTAATGGCGTGATAAAAGCTTCTGTAGCGTTAACAACTCAACGTGGT
AGATTTGAATATCATAATGAGCAAACAGGACCGCGTGAAATTTGTGAGAAAATTATCTCG
CTTGGATTTGAGGCGTCTGTGATAAGCAATCGAGATAAACTCTCGTATGGTTACTTGGAA
AATAAACGCGAGATTAAAAAATGGCGCGATACATTCCTCTTTTCACTTGCTTTTGGTGGT
CCATGTATGATCGCTATGGCTTATTTTATGTTAATGATGGAAATTGAAGGACATGAAAGT
ATGTGCTGTGTTGTCAGTGGCCTATCATTAGAGAATCTAGTCATGTTTGTTCTTTCAACT
CCTGTTCAATTTATTGGCGGATACCATTTTTATGTTCAAGCTTATCGTGCAATTAAGCAT
GGATCAAGTAATATGGATGTACTAATTAGTATGGCAACAATCATTAGCTATCTTTATTCA
GTAATTGTTTTAGCCATTGCAATGATTCAAAAGCATCATACTTCGCCATTAACATTTTTT
GATACACCAGCAATGCTTTTTATTTTTGTATCACTTGGTAGATGGCTTGAAAATATTGCA
AGAGGCAAAACAAGTGAAGCACTTTCAAAACTCATGTCATTAAAACCAATCGATGCAATT
ATCGTGCAATTGGGAAAAGATAAAGAAATTTTAAGTGAAAAATCAATATCAGTTGATTTA
ATTCAACGTGGTGACATTCTCAAAGTTATACCCGGAAGTAAAGTTCCAGTTGATGGAAAA
ATTATTTTTGGCTCGAGTTCATGTGATGAAAGTTTGATAACTGGTGAATCAATGCCAGTG
TTAAAGCGAGAAGGTTCAATTGTAATTGGTGGATCAATAAATCAAAATGGATTGATTTTA
ATGACTGCAACACATACAGGTGAAAACACGACATTAGCACAAATTGTAAAATTAGTTGAA
GAAGCACAAACGTCGAAAGCACCAATTCAACAATTAGCTGATAAAATCGCTGGATATTTT
GTTCCTCTTGTAATTTTAACATCGACTTTAACACTCTTTGGATGGTTGATTGCACTCAAC
ATAAATATGGATTGGCTGCCAAAAGCTGCTATGGAACATGGTGATTTCACAAATACAGAA
ATTATTTGGAGTTTCTCTTTCAAATGTGCGATTTCTGTGCTTGCTATTGCTTGTCCTTGT
GCACTTGGATTAGCTACTCCAACAGCTGTTATGGTTTCAACTGGCATTGGAGCATTAAAT
GGAATTTTAATAAAAGGGGCAAGTCCACTTGAGAATGCTCATAAAGTAAAGACAGTTGTA
TTTGACAAAACTGGCACAATAACACATGGGAAGCCTATGACTTCAAAGATTGTCATGTTT
GTAAAACAAGAAGTTTGTTCCTTAACACGAGCTTTAACCATAATAGGAAGTGCAGAAAGC
TCTTCAGAGCATCCGATTGCAAGAGCAATTGTCAGTTATATCAATGAGTTCCTTAAAATT
GATTCCTTTGGAAAATACTCAGATTTTACATCAGTTCCGGGTTGCGGAATACGATGTACA
GTGTCGAATTTAGAAAAGACTTTTGCAACAGCATTGAGATCAGAAAAAGTTATAAACTTT
GAAAATGCCTATGAGAGCAACAGATCAAATGAAAAAATTATTCAAACAATCAATAATGTC
ACATTCGAGGAACATTTACCAACGAATGTTAATAATTTATTACTCGAAAATGGATTGACA
AATGAAAATGAAAGCATTTCAACGCATAGCAAAGTGAAAGTACTTATTGGAAACCGCGAA
TGGATGCATAGAAATGGAATAACAATACCTTCAGATATCAATCAAATTTTACTTGCTGAA
GAATGTGTTGGACATACAGCAGTTTTATGCTCACTTAATGATAAATTAATTTGCATGATT
TCTGTTTCTGATATGATCAAGCCTGAAGCACAATTAGCAGTCTATACTCTTAAGAAAATG
AATATAAATGTCATCTTGTTGACTGGTGATAATAAAAATACAGCCAGTAGCATTGGTCAA
CAAGTTGGAATAAGAACAATTTATTCTGAAGTTCTTCCATCACATAAAGTAGCAAAAATA
CAAAAATTCCAAGAAAGTGGAATGAGAGTTGCGATGGTTGGTGATGGAGTCAATGACTCA
CCAGCTTTAGTACAAGCTGATGTTGGAATTGCTATTGGAAAAGGAACAGATGTTGCTGCT
GAAGCTGCAGATGTAGTGCTTATGAGAAATGATTTATTAGATGTTATTGCTTGCCTTGAT
TTATCACGTAAGACTGTTAGAAGAATTAGAATGAATTTCTTATTTGCCAGTATGTACAAT
TTACTTGGAATTCCTATTGCTGCTGGGGTATTTAGTCCTTTTGGAATTTTGTTAGAGCCA
TGGATGGCAGCTGCCGCAATGTGTGCAAGTTCGATTACTGTCGTATGCTCATCATTGATG
TTGAAATTCTATCGAAAGCCAACTGCAGCTTCACTCTCAACTCCTGAATTTAATAATTAT
CTTCAATCTCTCAGCGATTTGGACGATATTTCTGTTCATCGAGGACTTGATGACATTCCT
CGACCTGTTTTTAATAGATCAAACAGTTCAATTATCTCAAGAATATTTACATCACTCAGA
AGCAACAATTCAACGAAGGACTTGGACATTAAAACTCAACGCCTTTTATATGATGACGAA
GATTTGAATTTTCATGTATAA
>g8628.t1 Gene=g8628 Length=1206
MNSRQEEREFLLQRDAMEEDQSLLDFHDTGSTSINIYGMKCQNCVRKIEENMQKEIGVLQ
IKVYLEEKRAQIEYDKHVTNPLALTAAIKKLGFHTNPDDLKKIKESTVFINGMKCNNCVN
KIESSIKEKKGIEKISVDLANKSAIVKYDESATNLSEILSQIIQLGFKASDSPFDENIET
QNDLIINLPVTTNGSIEKNDKLIRKGHFHVQGMTCASCVSAIEKHCMKLKGVETVLISLL
GAKAEISYDENLIDENEIAASLSSLGFPTEVIYEPEAGISSIEIEIHGMSCSSCVNKIEQ
AVLKINGVIKASVALTTQRGRFEYHNEQTGPREICEKIISLGFEASVISNRDKLSYGYLE
NKREIKKWRDTFLFSLAFGGPCMIAMAYFMLMMEIEGHESMCCVVSGLSLENLVMFVLST
PVQFIGGYHFYVQAYRAIKHGSSNMDVLISMATIISYLYSVIVLAIAMIQKHHTSPLTFF
DTPAMLFIFVSLGRWLENIARGKTSEALSKLMSLKPIDAIIVQLGKDKEILSEKSISVDL
IQRGDILKVIPGSKVPVDGKIIFGSSSCDESLITGESMPVLKREGSIVIGGSINQNGLIL
MTATHTGENTTLAQIVKLVEEAQTSKAPIQQLADKIAGYFVPLVILTSTLTLFGWLIALN
INMDWLPKAAMEHGDFTNTEIIWSFSFKCAISVLAIACPCALGLATPTAVMVSTGIGALN
GILIKGASPLENAHKVKTVVFDKTGTITHGKPMTSKIVMFVKQEVCSLTRALTIIGSAES
SSEHPIARAIVSYINEFLKIDSFGKYSDFTSVPGCGIRCTVSNLEKTFATALRSEKVINF
ENAYESNRSNEKIIQTINNVTFEEHLPTNVNNLLLENGLTNENESISTHSKVKVLIGNRE
WMHRNGITIPSDINQILLAEECVGHTAVLCSLNDKLICMISVSDMIKPEAQLAVYTLKKM
NINVILLTGDNKNTASSIGQQVGIRTIYSEVLPSHKVAKIQKFQESGMRVAMVGDGVNDS
PALVQADVGIAIGKGTDVAAEAADVVLMRNDLLDVIACLDLSRKTVRRIRMNFLFASMYN
LLGIPIAAGVFSPFGILLEPWMAAAAMCASSITVVCSSLMLKFYRKPTAASLSTPEFNNY
LQSLSDLDDISVHRGLDDIPRPVFNRSNSSIISRIFTSLRSNNSTKDLDIKTQRLLYDDE
DLNFHV
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 56 | g8628.t1 | CDD | cd00371 | HMA | 34 | 94 | 2.00795E-14 |
| 53 | g8628.t1 | CDD | cd00371 | HMA | 110 | 170 | 1.06469E-14 |
| 55 | g8628.t1 | CDD | cd00371 | HMA | 210 | 270 | 6.90666E-12 |
| 54 | g8628.t1 | CDD | cd00371 | HMA | 283 | 346 | 1.30689E-14 |
| 52 | g8628.t1 | CDD | cd02094 | P-type_ATPase_Cu-like | 372 | 1123 | 0.0 |
| 29 | g8628.t1 | Gene3D | G3DSA:3.30.70.100 | - | 30 | 99 | 9.1E-16 |
| 32 | g8628.t1 | Gene3D | G3DSA:3.30.70.100 | - | 101 | 170 | 4.1E-17 |
| 30 | g8628.t1 | Gene3D | G3DSA:3.30.70.100 | - | 203 | 274 | 3.6E-19 |
| 31 | g8628.t1 | Gene3D | G3DSA:3.30.70.100 | - | 280 | 352 | 2.8E-19 |
| 33 | g8628.t1 | Gene3D | G3DSA:2.70.150.20 | - | 501 | 623 | 6.4E-45 |
| 34 | g8628.t1 | Gene3D | G3DSA:3.40.1110.10 | - | 749 | 942 | 1.3E-56 |
| 8 | g8628.t1 | PANTHER | PTHR43520:SF9 | COPPER-TRANSPORTING ATPASE 2 | 34 | 171 | 0.0 |
| 10 | g8628.t1 | PANTHER | PTHR43520 | ATP7, ISOFORM B | 34 | 171 | 0.0 |
| 7 | g8628.t1 | PANTHER | PTHR43520:SF9 | COPPER-TRANSPORTING ATPASE 2 | 191 | 1150 | 0.0 |
| 9 | g8628.t1 | PANTHER | PTHR43520 | ATP7, ISOFORM B | 191 | 1150 | 0.0 |
| 20 | g8628.t1 | PRINTS | PR00942 | Copper-transporting ATPase 1 signature | 42 | 60 | 4.1E-27 |
| 18 | g8628.t1 | PRINTS | PR00942 | Copper-transporting ATPase 1 signature | 60 | 77 | 4.1E-27 |
| 17 | g8628.t1 | PRINTS | PR00942 | Copper-transporting ATPase 1 signature | 372 | 393 | 4.1E-27 |
| 19 | g8628.t1 | PRINTS | PR00942 | Copper-transporting ATPase 1 signature | 408 | 428 | 4.1E-27 |
| 16 | g8628.t1 | PRINTS | PR00942 | Copper-transporting ATPase 1 signature | 428 | 453 | 4.1E-27 |
| 15 | g8628.t1 | PRINTS | PR00119 | P-type cation-transporting ATPase superfamily signature | 569 | 583 | 1.1E-25 |
| 14 | g8628.t1 | PRINTS | PR00119 | P-type cation-transporting ATPase superfamily signature | 740 | 754 | 1.1E-25 |
| 13 | g8628.t1 | PRINTS | PR00119 | P-type cation-transporting ATPase superfamily signature | 960 | 970 | 1.1E-25 |
| 12 | g8628.t1 | PRINTS | PR00119 | P-type cation-transporting ATPase superfamily signature | 1013 | 1032 | 1.1E-25 |
| 11 | g8628.t1 | PRINTS | PR00119 | P-type cation-transporting ATPase superfamily signature | 1036 | 1048 | 1.1E-25 |
| 2 | g8628.t1 | Pfam | PF00403 | Heavy-metal-associated domain | 35 | 94 | 9.5E-9 |
| 4 | g8628.t1 | Pfam | PF00403 | Heavy-metal-associated domain | 107 | 168 | 2.9E-15 |
| 1 | g8628.t1 | Pfam | PF00403 | Heavy-metal-associated domain | 208 | 267 | 4.8E-10 |
| 3 | g8628.t1 | Pfam | PF00403 | Heavy-metal-associated domain | 284 | 344 | 3.0E-11 |
| 5 | g8628.t1 | Pfam | PF00122 | E1-E2 ATPase | 532 | 715 | 6.3E-45 |
| 6 | g8628.t1 | Pfam | PF00702 | haloacid dehalogenase-like hydrolase | 736 | 1027 | 7.5E-50 |
| 38 | g8628.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 371 | - |
| 50 | g8628.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 372 | 393 | - |
| 41 | g8628.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 394 | 412 | - |
| 44 | g8628.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 413 | 435 | - |
| 35 | g8628.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 436 | 446 | - |
| 46 | g8628.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 447 | 469 | - |
| 43 | g8628.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 470 | 474 | - |
| 45 | g8628.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 475 | 496 | - |
| 36 | g8628.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 497 | 635 | - |
| 51 | g8628.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 636 | 661 | - |
| 42 | g8628.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 662 | 680 | - |
| 47 | g8628.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 681 | 705 | - |
| 39 | g8628.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 706 | 1072 | - |
| 49 | g8628.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1073 | 1095 | - |
| 40 | g8628.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1096 | 1100 | - |
| 48 | g8628.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1101 | 1121 | - |
| 37 | g8628.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1122 | 1206 | - |
| 66 | g8628.t1 | ProSitePatterns | PS01047 | Heavy-metal-associated domain. | 110 | 139 | - |
| 65 | g8628.t1 | ProSitePatterns | PS01047 | Heavy-metal-associated domain. | 286 | 315 | - |
| 67 | g8628.t1 | ProSitePatterns | PS00154 | E1-E2 ATPases phosphorylation site. | 742 | 748 | - |
| 76 | g8628.t1 | ProSiteProfiles | PS50846 | Heavy-metal-associated domain profile. | 31 | 97 | 18.656 |
| 75 | g8628.t1 | ProSiteProfiles | PS50846 | Heavy-metal-associated domain profile. | 105 | 171 | 19.318 |
| 77 | g8628.t1 | ProSiteProfiles | PS50846 | Heavy-metal-associated domain profile. | 205 | 271 | 18.968 |
| 74 | g8628.t1 | ProSiteProfiles | PS50846 | Heavy-metal-associated domain profile. | 281 | 347 | 19.685 |
| 78 | g8628.t1 | SFLD | SFLDF00027 | p-type atpase | 722 | 1065 | 0.0 |
| 79 | g8628.t1 | SFLD | SFLDG00002 | C1.7: P-type atpase like | 722 | 1065 | 0.0 |
| 24 | g8628.t1 | SUPERFAMILY | SSF55008 | HMA, heavy metal-associated domain | 30 | 97 | 1.57E-13 |
| 23 | g8628.t1 | SUPERFAMILY | SSF55008 | HMA, heavy metal-associated domain | 103 | 170 | 1.3E-16 |
| 25 | g8628.t1 | SUPERFAMILY | SSF55008 | HMA, heavy metal-associated domain | 206 | 272 | 1.26E-15 |
| 22 | g8628.t1 | SUPERFAMILY | SSF55008 | HMA, heavy metal-associated domain | 277 | 350 | 4.84E-17 |
| 26 | g8628.t1 | SUPERFAMILY | SSF81665 | Calcium ATPase, transmembrane domain M | 457 | 1112 | 5.89E-7 |
| 27 | g8628.t1 | SUPERFAMILY | SSF81653 | Calcium ATPase, transduction domain A | 534 | 619 | 1.57E-23 |
| 28 | g8628.t1 | SUPERFAMILY | SSF56784 | HAD-like | 738 | 1118 | 3.52E-51 |
| 21 | g8628.t1 | SUPERFAMILY | SSF81660 | Metal cation-transporting ATPase, ATP-binding domain N | 769 | 823 | 2.68E-6 |
| 72 | g8628.t1 | TIGRFAM | TIGR00003 | TIGR00003: copper ion binding protein | 34 | 94 | 4.3E-9 |
| 69 | g8628.t1 | TIGRFAM | TIGR00003 | TIGR00003: copper ion binding protein | 107 | 168 | 2.4E-11 |
| 71 | g8628.t1 | TIGRFAM | TIGR00003 | TIGR00003: copper ion binding protein | 206 | 267 | 2.3E-10 |
| 70 | g8628.t1 | TIGRFAM | TIGR00003 | TIGR00003: copper ion binding protein | 282 | 345 | 1.2E-10 |
| 73 | g8628.t1 | TIGRFAM | TIGR01525 | ATPase-IB_hvy: heavy metal translocating P-type ATPase | 445 | 1121 | 4.7E-189 |
| 68 | g8628.t1 | TIGRFAM | TIGR01494 | ATPase_P-type: HAD ATPase, P-type, family IC | 920 | 1090 | 9.4E-41 |
| 62 | g8628.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 371 | 393 | - |
| 58 | g8628.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 413 | 435 | - |
| 59 | g8628.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 447 | 469 | - |
| 64 | g8628.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 479 | 496 | - |
| 63 | g8628.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 636 | 658 | - |
| 60 | g8628.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 681 | 703 | - |
| 61 | g8628.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1073 | 1095 | - |
| 57 | g8628.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1099 | 1121 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0046872 | metal ion binding | MF |
| GO:0019829 | ATPase-coupled cation transmembrane transporter activity | MF |
| GO:0005507 | copper ion binding | MF |
| GO:0000166 | nucleotide binding | MF |
| GO:0016021 | integral component of membrane | CC |
| GO:0006812 | cation transport | BP |
KEGG
Orthology
- This transcript has been annotated with K17686 (P-type Cu+ transporter)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
