General information for g8635.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Sulfide:quinone oxidoreductase, mitochondrial.
Parent gene
- The parent gene g8635 is located on chr_2: 31953556..31954204 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8635 | g8635.t4 | isoform | g8635.t4 | 31952105 | 31953888 |
| chr_2 | g8635 | g8635.t4 | exon | g8635.t4.exon1 | 31952105 | 31952314 |
| chr_2 | g8635 | g8635.t4 | TTS | g8635.t4 | 31952126 | 31952126 |
| chr_2 | g8635 | g8635.t4 | cds | g8635.t4.CDS1 | 31952266 | 31952314 |
| chr_2 | g8635 | g8635.t4 | exon | g8635.t4.exon2 | 31952374 | 31952819 |
| chr_2 | g8635 | g8635.t4 | cds | g8635.t4.CDS2 | 31952374 | 31952819 |
| chr_2 | g8635 | g8635.t4 | exon | g8635.t4.exon3 | 31952878 | 31953131 |
| chr_2 | g8635 | g8635.t4 | cds | g8635.t4.CDS3 | 31952878 | 31953131 |
| chr_2 | g8635 | g8635.t4 | exon | g8635.t4.exon4 | 31953191 | 31953569 |
| chr_2 | g8635 | g8635.t4 | cds | g8635.t4.CDS4 | 31953191 | 31953569 |
| chr_2 | g8635 | g8635.t4 | exon | g8635.t4.exon5 | 31953628 | 31953733 |
| chr_2 | g8635 | g8635.t4 | cds | g8635.t4.CDS5 | 31953628 | 31953733 |
| chr_2 | g8635 | g8635.t4 | exon | g8635.t4.exon6 | 31953797 | 31953888 |
| chr_2 | g8635 | g8635.t4 | cds | g8635.t4.CDS6 | 31953797 | 31953888 |
| chr_2 | g8635 | g8635.t4 | TSS | g8635.t4 | 31954203 | 31954203 |
Sequences
>g8635.t4 Gene=g8635 Length=1487
ATGAATACAATCAAATGTCTAAGCAATTTAAGAAGTGGTTCAGTTCTTGCAAGAAATTTT
TCAACATCTAATTTAAATTTCGCAAATCATAAATGTCGCGTGTTAGTGGTTGGTGGAGGA
TGCGGTGGAACAGCTGTTGCTGCAAAACTTGCTTATCGACTTGGAGCTGGACAAGTTACA
GTTCTTGAATCCTCTGATAAACATTATTATCAACCACTCTTCACTCTAATTGGTGGCGGC
ATGAAAAAACTTGAAGATTCCTATCGACCTATGAAAGATACTCTTTCATGTCTTACAACT
TGGGTTAAAGATCGTGCAGCTAAATTCAATCCAACGACAAATACTGTTGAAACTGAAAAT
GGAGACACAATCGAATATGATTATTTAGTTGTTGCAACAGGAATTGAAGTTAATTATGAA
GCCATTCCAGGATTAGTTGATGCTTTGAAAGTCCCTAAAGGGCCAGTTTGTTCAATTTAT
TCTCCACTATATGTCAATCGTGTGTATGACGCTTTCCAAAGTTTCAAAGGTGGAAATGCT
ATTTTCACTTTTCCTGCATCACCAGTTAAATGTCCAGGTGCTCCTCAGAAAATTTTATAC
ATTTTTGAACATTATACACGAAAGAATAAGAAAAGAAATGCAGCTAAACTTTATTACAAC
ACTTCTTTGCCAGTAATTTTTGGTGTTAAACATTATGCTGATGCATTGTGGAAAGTTGTT
GAGAAACGTGATATTAATGTCAATTTACGTACAAATCTTGTTGAAGTTCTTCCAAATGGA
AGAGAAGCAGTTTTCGAAAACTTGGATACAAAAGAGAGAAAGATAATGGATTTTAATCTT
CTTCATGTGACACCACCTATGAGACCACCACTTGTTCTTAGAGAAAATTCTGGCGATTTA
GTAAATGAAGCTGGCTTTGTTGAAGTCAATAGATATACAATGCAACATATGAAGTATAAA
AATATTTTTGCGCTTGGTGATTGCACCAATTCACCAAACAGTAAGACAGCAGCAGCAGCA
GCGGCACAATGTCAAGTTGTGTATAAAAATTTATCAGCTATTATGGAAGGAAGAGAAGTA
GAACGAAATTATGATGGATATGCATCATGTCCACTTGTCACTGGCTACAATACATGCATA
CTGGCAGAATTTGATTATAATTTACAACCTTTAGAATCATTTCCATTTGAACAAGCTAAA
GAACGTTGGTCAATGTTTGTGATGAAAAAAGACTTAATGCCACCTCTTTATTGGCATTTG
ATGATGAATGGTTTATGGAATGGTCCCTCATTCATTCGTAAGACATTTGACTTTTTTAAG
AACTAACTCAATACTCATGAGTTGAAGCTTGTCATTTATACTAAGCCTGTTTTAGGAATA
TATTTTTGATATATATTACATTTGTTTAAAAATGTTTTCTGTTTTCAATAAAAGTTCTAT
TCTATTTCATTTTTATGTCTATCGTGAGTCAAAGAATTTTCTTTTAA
>g8635.t4 Gene=g8635 Length=441
MNTIKCLSNLRSGSVLARNFSTSNLNFANHKCRVLVVGGGCGGTAVAAKLAYRLGAGQVT
VLESSDKHYYQPLFTLIGGGMKKLEDSYRPMKDTLSCLTTWVKDRAAKFNPTTNTVETEN
GDTIEYDYLVVATGIEVNYEAIPGLVDALKVPKGPVCSIYSPLYVNRVYDAFQSFKGGNA
IFTFPASPVKCPGAPQKILYIFEHYTRKNKKRNAAKLYYNTSLPVIFGVKHYADALWKVV
EKRDINVNLRTNLVEVLPNGREAVFENLDTKERKIMDFNLLHVTPPMRPPLVLRENSGDL
VNEAGFVEVNRYTMQHMKYKNIFALGDCTNSPNSKTAAAAAAQCQVVYKNLSAIMEGREV
ERNYDGYASCPLVTGYNTCILAEFDYNLQPLESFPFEQAKERWSMFVMKKDLMPPLYWHL
MMNGLWNGPSFIRKTFDFFKN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g8635.t4 | Gene3D | G3DSA:3.50.50.100 | - | 29 | 423 | 0.0e+00 |
| 3 | g8635.t4 | PANTHER | PTHR10632 | SULFIDE:QUINONE OXIDOREDUCTASE | 6 | 436 | 0.0e+00 |
| 6 | g8635.t4 | PRINTS | PR00368 | FAD-dependent pyridine nucleotide reductase signature | 34 | 53 | 2.7e-05 |
| 4 | g8635.t4 | PRINTS | PR00368 | FAD-dependent pyridine nucleotide reductase signature | 126 | 144 | 2.7e-05 |
| 5 | g8635.t4 | PRINTS | PR00368 | FAD-dependent pyridine nucleotide reductase signature | 307 | 329 | 2.7e-05 |
| 2 | g8635.t4 | Pfam | PF07992 | Pyridine nucleotide-disulphide oxidoreductase | 33 | 145 | 0.0e+00 |
| 1 | g8635.t4 | Pfam | PF07992 | Pyridine nucleotide-disulphide oxidoreductase | 232 | 341 | 0.0e+00 |
| 8 | g8635.t4 | SUPERFAMILY | SSF51905 | FAD/NAD(P)-binding domain | 33 | 357 | 0.0e+00 |
| 7 | g8635.t4 | SUPERFAMILY | SSF51905 | FAD/NAD(P)-binding domain | 155 | 286 | 0.0e+00 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0055114 | NA | NA |
| GO:0016491 | oxidoreductase activity | MF |
KEGG
Orthology
- This transcript has been annotated with K22470 (eukaryotic sulfide quinone oxidoreductase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
