Gene loci information

Transcript annotation

  • This transcript has been annotated as (Lyso)-N-acylphosphatidylethanolamine lipase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g8636 g8636.t1 TTS g8636.t1 31954682 31954682
chr_2 g8636 g8636.t1 isoform g8636.t1 31954731 31956471
chr_2 g8636 g8636.t1 exon g8636.t1.exon1 31954731 31955168
chr_2 g8636 g8636.t1 cds g8636.t1.CDS1 31954731 31955168
chr_2 g8636 g8636.t1 exon g8636.t1.exon2 31955222 31955464
chr_2 g8636 g8636.t1 cds g8636.t1.CDS2 31955222 31955464
chr_2 g8636 g8636.t1 exon g8636.t1.exon3 31955519 31955646
chr_2 g8636 g8636.t1 cds g8636.t1.CDS3 31955519 31955646
chr_2 g8636 g8636.t1 exon g8636.t1.exon4 31955708 31955842
chr_2 g8636 g8636.t1 cds g8636.t1.CDS4 31955708 31955842
chr_2 g8636 g8636.t1 exon g8636.t1.exon5 31955904 31955986
chr_2 g8636 g8636.t1 cds g8636.t1.CDS5 31955904 31955986
chr_2 g8636 g8636.t1 exon g8636.t1.exon6 31956428 31956471
chr_2 g8636 g8636.t1 cds g8636.t1.CDS6 31956428 31956471
chr_2 g8636 g8636.t1 TSS g8636.t1 31956578 31956578

Sequences

>g8636.t1 Gene=g8636 Length=1071
ATGGTTAATGACAAAACTGTGATTGAATATGAACAATTGGGAAGAGAGGCATTATTTGGA
CTTTTTGTAAAATGGAATTCACATTCACCCGAAGCACTTGCTTCTTCAGAAGACAAAATT
TTCTCGAAAATAAAAAAGCCATTCAGAAGGTATCACGTTGATATTGGAAAATGTGTTGGG
AAAAATGACAAAATTTGGACATTTGAGATGAATGAAAAATCAGAAAATATTCCAATTGTT
CTCTTACATGGCTTTGGTGCAGGAATGGCATTTTGGGCACTAAATCTAGAAGCACTTGGT
ACAAATAATCCAGTGTATGCTTTTGATATATTAGGCTTAGCTCGCTCATCCCGTCCTATC
TTTTCAAATGATCCAGCTGAAATTGAAGAACAATTCGTGTTATCAATTGAAAAATGGAGA
GAAGCAATGAAAATTGATAAAATGATTTTAGTCGCACATAGTTGGGGTGGCTTTTTAGCT
TCATCTTATTCATTAAAATATGCAGAAAGAGTTGAGCATCTTTTATTAGTTGATCCATGG
GGACTTGATGAACATCCTGATATGGACAATTTTCCTTTATGGAAACTTACAGTTGCCTAT
GCAGTTCGTCTTTTGGATGGATGTTTTACTATGATTCGAGTATTTGGACCGTTTGGTGAT
TATTTAATCAAAAATGTACGACCAGATTTATTGCAAAAGTACAATTCAGTTTGTGAACCA
TCAGTGTTTTCTGATTATATTTATCACTGTGTTAATCATTGGCAGCCTACAGGAGAAGTT
GCATTTCATAAAATGACACGTGTTGGTCCATGGCCTATCAATCCAGTTGGAGAAAGACTC
AAAGAATTAGACAAAAACCTTCCACTAACTTTTCTTTACGGATCAAATTCATGGACGAGT
AAAGCTTATGGTTATATTTTAAAAGATCACAGAAAAGAATCATATACTGAAATAAAAATC
ATACCTGAAGCAGGACATCATCTTTATACAGATAATTCTGATGAATTTCATAAAGCTGTG
CTTGAAGCATCTCAGATTTTAAGATCAAATTTAATGAAGAAAGACATGTGA

>g8636.t1 Gene=g8636 Length=356
MVNDKTVIEYEQLGREALFGLFVKWNSHSPEALASSEDKIFSKIKKPFRRYHVDIGKCVG
KNDKIWTFEMNEKSENIPIVLLHGFGAGMAFWALNLEALGTNNPVYAFDILGLARSSRPI
FSNDPAEIEEQFVLSIEKWREAMKIDKMILVAHSWGGFLASSYSLKYAERVEHLLLVDPW
GLDEHPDMDNFPLWKLTVAYAVRLLDGCFTMIRVFGPFGDYLIKNVRPDLLQKYNSVCEP
SVFSDYIYHCVNHWQPTGEVAFHKMTRVGPWPINPVGERLKELDKNLPLTFLYGSNSWTS
KAYGYILKDHRKESYTEIKIIPEAGHHLYTDNSDEFHKAVLEASQILRSNLMKKDM

Protein features from InterProScan

Transcript Database ID Name Start End E.value
5 g8636.t1 Gene3D G3DSA:3.40.50.1820 - 23 345 0
2 g8636.t1 PANTHER PTHR42886:SF34 1-ACYLGLYCEROL-3-PHOSPHATE O-ACYLTRANSFERASE ABHD5 19 344 0
3 g8636.t1 PANTHER PTHR42886 RE40534P-RELATED 19 344 0
1 g8636.t1 Pfam PF00561 alpha/beta hydrolase fold 78 329 0
4 g8636.t1 SUPERFAMILY SSF53474 alpha/beta-Hydrolases 64 341 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed