Gene loci information

Transcript annotation

  • This transcript has been annotated as (Lyso)-N-acylphosphatidylethanolamine lipase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g8636 g8636.t5 TTS g8636.t5 31954682 31954682
chr_2 g8636 g8636.t5 isoform g8636.t5 31954731 31955842
chr_2 g8636 g8636.t5 exon g8636.t5.exon1 31954731 31955168
chr_2 g8636 g8636.t5 cds g8636.t5.CDS1 31954731 31955168
chr_2 g8636 g8636.t5 exon g8636.t5.exon2 31955222 31955464
chr_2 g8636 g8636.t5 cds g8636.t5.CDS2 31955222 31955464
chr_2 g8636 g8636.t5 exon g8636.t5.exon3 31955519 31955646
chr_2 g8636 g8636.t5 cds g8636.t5.CDS3 31955519 31955646
chr_2 g8636 g8636.t5 exon g8636.t5.exon4 31955708 31955842
chr_2 g8636 g8636.t5 cds g8636.t5.CDS4 31955708 31955762
chr_2 g8636 g8636.t5 TSS g8636.t5 31956578 31956578

Sequences

>g8636.t5 Gene=g8636 Length=944
AAATAAAAAAGCCATTCAGAAGGTATCACGTTGATATTGGAAAATGTGTTGGGAAAAATG
ACAAAATTTGGACATTTGAGATGAATGAAAAATCAGAAAATATTCCAATTGTTCTCTTAC
ATGGCTTTGGTGCAGGAATGGCATTTTGGGCACTAAATCTAGAAGCACTTGGTACAAATA
ATCCAGTGTATGCTTTTGATATATTAGGCTTAGCTCGCTCATCCCGTCCTATCTTTTCAA
ATGATCCAGCTGAAATTGAAGAACAATTCGTGTTATCAATTGAAAAATGGAGAGAAGCAA
TGAAAATTGATAAAATGATTTTAGTCGCACATAGTTGGGGTGGCTTTTTAGCTTCATCTT
ATTCATTAAAATATGCAGAAAGAGTTGAGCATCTTTTATTAGTTGATCCATGGGGACTTG
ATGAACATCCTGATATGGACAATTTTCCTTTATGGAAACTTACAGTTGCCTATGCAGTTC
GTCTTTTGGATGGATGTTTTACTATGATTCGAGTATTTGGACCGTTTGGTGATTATTTAA
TCAAAAATGTACGACCAGATTTATTGCAAAAGTACAATTCAGTTTGTGAACCATCAGTGT
TTTCTGATTATATTTATCACTGTGTTAATCATTGGCAGCCTACAGGAGAAGTTGCATTTC
ATAAAATGACACGTGTTGGTCCATGGCCTATCAATCCAGTTGGAGAAAGACTCAAAGAAT
TAGACAAAAACCTTCCACTAACTTTTCTTTACGGATCAAATTCATGGACGAGTAAAGCTT
ATGGTTATATTTTAAAAGATCACAGAAAAGAATCATATACTGAAATAAAAATCATACCTG
AAGCAGGACATCATCTTTATACAGATAATTCTGATGAATTTCATAAAGCTGTGCTTGAAG
CATCTCAGATTTTAAGATCAAATTTAATGAAGAAAGACATGTGA

>g8636.t5 Gene=g8636 Length=287
MNEKSENIPIVLLHGFGAGMAFWALNLEALGTNNPVYAFDILGLARSSRPIFSNDPAEIE
EQFVLSIEKWREAMKIDKMILVAHSWGGFLASSYSLKYAERVEHLLLVDPWGLDEHPDMD
NFPLWKLTVAYAVRLLDGCFTMIRVFGPFGDYLIKNVRPDLLQKYNSVCEPSVFSDYIYH
CVNHWQPTGEVAFHKMTRVGPWPINPVGERLKELDKNLPLTFLYGSNSWTSKAYGYILKD
HRKESYTEIKIIPEAGHHLYTDNSDEFHKAVLEASQILRSNLMKKDM

Protein features from InterProScan

Transcript Database ID Name Start End E.value
5 g8636.t5 Gene3D G3DSA:3.40.50.1820 - 2 276 2.3E-35
2 g8636.t5 PANTHER PTHR42886:SF34 1-ACYLGLYCEROL-3-PHOSPHATE O-ACYLTRANSFERASE ABHD5 3 275 5.4E-82
3 g8636.t5 PANTHER PTHR42886 RE40534P-RELATED 3 275 5.4E-82
1 g8636.t5 Pfam PF00561 alpha/beta hydrolase fold 9 260 2.0E-17
6 g8636.t5 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1 6 -
8 g8636.t5 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 7 25 -
7 g8636.t5 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 26 287 -
4 g8636.t5 SUPERFAMILY SSF53474 alpha/beta-Hydrolases 6 272 6.14E-37

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values