Gene loci information

Transcript annotation

  • This transcript has been annotated as Serine/threonine-protein kinase N.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g8641 g8641.t1 TTS g8641.t1 31996516 31996516
chr_2 g8641 g8641.t1 isoform g8641.t1 31997312 32004049
chr_2 g8641 g8641.t1 exon g8641.t1.exon1 31997312 31997455
chr_2 g8641 g8641.t1 cds g8641.t1.CDS1 31997312 31997455
chr_2 g8641 g8641.t1 exon g8641.t1.exon2 31997515 31997655
chr_2 g8641 g8641.t1 cds g8641.t1.CDS2 31997515 31997655
chr_2 g8641 g8641.t1 exon g8641.t1.exon3 31997711 31998000
chr_2 g8641 g8641.t1 cds g8641.t1.CDS3 31997711 31998000
chr_2 g8641 g8641.t1 exon g8641.t1.exon4 31998056 31998245
chr_2 g8641 g8641.t1 cds g8641.t1.CDS4 31998056 31998245
chr_2 g8641 g8641.t1 exon g8641.t1.exon5 31998315 31998833
chr_2 g8641 g8641.t1 cds g8641.t1.CDS5 31998315 31998833
chr_2 g8641 g8641.t1 exon g8641.t1.exon6 31999199 31999561
chr_2 g8641 g8641.t1 cds g8641.t1.CDS6 31999199 31999561
chr_2 g8641 g8641.t1 exon g8641.t1.exon7 31999937 32000724
chr_2 g8641 g8641.t1 cds g8641.t1.CDS7 31999937 32000724
chr_2 g8641 g8641.t1 exon g8641.t1.exon8 32000783 32001152
chr_2 g8641 g8641.t1 cds g8641.t1.CDS8 32000783 32001152
chr_2 g8641 g8641.t1 exon g8641.t1.exon9 32001697 32002658
chr_2 g8641 g8641.t1 cds g8641.t1.CDS9 32001697 32002658
chr_2 g8641 g8641.t1 exon g8641.t1.exon10 32002721 32002997
chr_2 g8641 g8641.t1 cds g8641.t1.CDS10 32002721 32002997
chr_2 g8641 g8641.t1 exon g8641.t1.exon11 32003092 32003376
chr_2 g8641 g8641.t1 cds g8641.t1.CDS11 32003092 32003376
chr_2 g8641 g8641.t1 exon g8641.t1.exon12 32003442 32003642
chr_2 g8641 g8641.t1 cds g8641.t1.CDS12 32003442 32003642
chr_2 g8641 g8641.t1 exon g8641.t1.exon13 32003816 32004049
chr_2 g8641 g8641.t1 cds g8641.t1.CDS13 32003816 32004049
chr_2 g8641 g8641.t1 TSS g8641.t1 32004474 32004474

Sequences

>g8641.t1 Gene=g8641 Length=4764
ATGGAAAAATCAAAAAATGGTGATAATGAAAGTGGCAGTAGCAGTGGTAATGAAATGACT
GCTGAATGGGTTGTCAAAGCACAGTTAAAAATTACACAACCAAAGAAAAAAGCAGCATCA
TTTACGACAAGTGATTGTGGTGCAAGATCAACTGGAAGTCCATGTAGAATTATTTATAAA
TGGACATCTGATGAGAGTAAAGCACATTTGACTGGTAAAAATCAAACAGAGAAGACATTA
AAAACTAGGTCACAGCATACACATGATGGTGCTGATTCATCCGAGATAAAACATAAACAT
GACAATAGTAAAACACTTAAAAGCACTTGTAATATAATATTGACTACAGATATTTGTCCA
AGTTCATTGAATAATGGCACGAAGATCACTCAAGATGGCTGTACAACACATACTTATACT
TTTTCGCCCGATCAGACTCAAGTATTTCGTGAAGTTAGTACACATGCACAAGAACCTTCA
ATCACTGTATCGAATGAAGAAGAAGAAAAAATATTAGTATCGAGAGATGTGAGCTGTCAG
ACAAGCGATTGCGAAGTGATACCAATCAAGAAAAAGTCTGACAGCATTAAAAATAAAAAT
GGTAGTCGATCGTCAAGTGTAGAAGGACGAAGAAAAGCATATAGTGACCATAGAAGAGCA
ACTGACTCTATAATGGCATCTTCATCAGTGAGACGAAGCGTAGAAGGAAATCGTTTAACG
CCTTCAAGAACACCAAGAAGAATGTCTCCTGCTCTTTCAAATCCTTCGGCACATTCAAAA
GAAAAGAAAAAACCACCAAGAACTGTTCATATTGATGTTTATTGCACAGGCTCAGAAGTT
GATACATCAAATAGCTCAAATGCTTCATCACCAAATATTGTCGACGATATAACTAATTTA
ATGACACAGGCGGCGACAGTTATAGATGCTGATGATATGTTATTAAAACATAGAAGAATC
GTTACTAAAAATGAATTGCCTAGAAAGCTAATGAAAGCAGAACAAAAAGCTTCCTCAACA
AAACTAGAAATAACAGAGCAAAATGACAATGAACAACAAAAGCAACAGCAGCAATTGTTT
GACTTTTCACGTGTATTGCTACAAAATAATATGAATGAAAAGGAAGAAGTCAATGAAAGT
AAACAAATGCTGTTTAAAAAATATCTTGGCGATCAACGTCAAATACAAAAATTCAATGAG
TTAAAGTCGCTAATGCATTTTCGTCGTCAGCCAAGTGATGATGCAATAAGTAGTAATTAT
CCAAATTCAAGTTATTCGACTGTTCGTGATTTTACATCAAGTTCACTTACATCAGCTGCT
GCAAATTCACCTTCAATAGTGACATTCGATGAATGTGATTGGAAAGACTTGGATAATGCA
ATTCATACAGGAAATTTTCTTACTCCAGCTGAAAGTATTCATAATGTTGATAAAAATGAT
GAACTAATGAAGATGAAAGATTTCAAACGATTATGGAGTGAACCTGGAAGTGAGCTATTG
AATCAACGTAAACTCATGGAAAACTTTTCATTGCCTTCTGGCAATTTTTCAGAGTCCGAC
AATAGTTTTCGATGTCAAAACTCTGGAAATATCAGTGATTCTAGTCCATCAACTGTTATT
AGCTATTCACACAAGAAAGCTATTAGTGAGGCAAAAATAATTAAAGAAGTCACACCCGAA
AGGAAATCGATTGAAGCGAGCACACATTCATCATCATTAAAATCGGGAAACTACTCAAAA
GATCATCTACAATTGGCACAGAAATTTGGCTCTGTGATTAAATCAATGCGCAAACCAGGT
CATCATGTCGGTCCAGTACGAAATCCATCGTGTCTATGTGAAACATGCAAACGTTGGGTG
CTTGAAAGAGATCAAGTTCAAGGACGTGAAAGAGCTTATTCTTTTGGAGAGACACCAATT
ACACGAACAACATTCTGGAAAAGAAATCATCGCTATTACGCACAAGGACGATTGATTGAG
TCATCACGAAAATTAGACCTTTTACGGTATGCATTGGAAATTCGTCGCAATGATTTACCG
CCAGATTCTGAGGCGAGTAGGCAATTAAAGACTGAACTTCAAAATGTTCAAGCAGCAAGT
CCTGTACCTGTTCAGTATACATCATTGCATCCATTTCGTGCTGGCAATCAAAGTAAAACT
TCCAACTTTTTATCACTGTCACGTTGTGCTGCTGTAACTGGTAAACTTGAAGTTCGACTT
ATGGGATGTCAGGATCTTCTTGAAGATGTACCAGGACGTTCACGAAGAGATAAAGACTCA
ATTTCAAGTCCAAGTGGAGATTTAAAAAGTTTTGTAAAGGGTGTTACTAGCCGAAGTTCA
TCAAAAAGTTATAGTGTTAAGGATGACATTTCATCAGAAATAATGGCTGTTATCAAATTA
GATAATACAACAGTTGCTCAAACATCATGGAAACCTTGTTCACAACAAGCATGGGATCAG
CGTTTTTCAATTGATCTTGATAAGTCACGTGAACTTGAAATTGGGATATATTGGCGCGAT
TGGAGATCATTATGTGCTGTTAAGTTTCTTAGATTAGAAGAGTTTATCGATGACATTCGA
CATGGAATGGCTCTTCAACTTGAACCACAAGGATTACTTTTTGCTGAAATTAAATTTCTT
AATCCAATGATTTCACGAAAACCAAAATTGCAACGTCAAAAGATGATTTTCAATAAGCAA
GCTAAAAATATTCCAAGAGCGAAGCAAATGAATATAAATATTGCGACATGGGGGCGACTA
TTAAAACGAAGTGCTCCAAGTCAACAGCAAAATAATAATGCGGTTCAAACGCCAACATCA
TCGAATCATCCATATGGAAATGGCAGTTCTTCAGTCACTGGCATTCAACCTGTTCAGTTA
ATTTTCGATGAACCGCAACAACCGCTTGATCCTGTTGAAACTGCTGGTGAAATTCCGAAT
GAAAATGTTGCCGGACTCAGTGGACAAAGGCCGTTGGGCATGCACAGCAGTGGAAGTATT
AATTCGAATGATTCAATCCCACCTCAACCACAGCCTCGAAATTATCAACCACCTCCACCT
GTTAAACAAAAGAAACCGCAAATGCCTCCAGCATTGCCACCAAAAATGGATCAAGAGCTG
CACAATGCACTACATGCGTTCGATTTTCTGCATAAACTTTCCAATGATCAGGAATATCAT
CAACGTGAATCATCGTTGTCCCCACAAATGCCACAACAGCAGCAGCAACAAATATCACTT
GATGTTGATCTCTTACGTCCTGTATTATCGATGCCGCCAGTAGTTCTTATGGGAATGAAT
GCAGAACATTCTGTCAATAGTTCAGGCAATAGCAGTCCTCGTTTGAATATTCACTCGATA
CCACCGAGTCCAATTGTTGAGATGCCTCCTTCCCCAGCGCCTTATCAATTGCCTCTTGTT
GAATTTCCCACTGAAGATGATGCTTATGAATATGATGAGCATGGTGGCGAACTTGTCGAG
ATTGTAACAAATTTCGAAAACTTGAGTATTCCTTCAATGCCGTCTCAACAACCACAGCAA
CCATTCCTAATGCAACAGCCAAGTACTTCTCAATATTCTCAATCTTCTCACCATGTTCCT
CCTCATATGATACAGCAACAGCCTGTGCCACATCACGTTGAAATGCAACAAGGTATCAAT
AATAATAACAACATCAATAATCGTCAACGACAAAATGTATCTCGTGGCTTACAATATCGC
GATAGTGCATATGAATCGAGACGACATTCGCAATCGATGGTGATGAGTTTAGACAGTTTT
AGATTGCTCAGTGTACTTGGTCGTGGACATTTTGGAAAAGTCATTTTGTCACAGTATAGA
AATACTGGTGAATATTTTGCCATTAAAGCATTGAAAAAAGGCGACATAATTGCACGTGAC
GAGATTGAATCACTGCTAAGTGAAAAGAGAATATTTGAAGTTGCAAATACTATGAGACAT
CCATTCCTGGTTAATTTATTTGCATGCTTTCAAACTGAACAACACGTTTGTTTTGTTATG
GAATATGCAGCAGGTGGAGATTTAATGATGCACATTCATACAGATGTTTTTAGTGAACCA
CGTGCAGTTTTTTATGCATCATGTGTTGTATTAGGTTTACAGTATCTTCATGAAAATAAA
ATCATTTATCGTGATTTAAAATTGGATAATTTATTGCTTGATACTGAAGGATATGTAAAA
ATAGCTGATTTTGGCTTGTGTAAAGAAGGAATGGGCTTTGGTGATAGAACAGGAACATTC
TGTGGAACACCTGAGTTTCTCGCTCCAGAAGTATTAACAGAGACTTCTTATACACGTTCC
GTCGACTGGTGGGGTCTAGGAGTTTTAATATTTGAAATGCTTGTTGGAGAAAGTCCATTC
CCTGGTGATGATGAGGAAGAAGTTTTTGATTCAATTGTCAATGATGAAGTTCGATATCCA
CGCTTTTTGTCACTTGAAGCAATTGCTATTATGAGAAGACTTTTACGTAAAAATCCTGAG
AGACGATTGGGAAGTTCAGAACGTGATGCAGAAGATGTTAAAAGACAAGCATTCTTTAGA
GGAATTTCTTGGGATGATTTGCTACTACGTAAAGTTAAGCCACCATTTGTTCCAACTATT
CGTTCCATGGAAGATGTATCAAACTTTGATGAAGAATTCACATCTGAAAAACCACAGCTG
ACACCACCAAAAGAACCGAGACATTTGACAGATCAAGAACAGGATTTTTTCAAAGATTTT
TCATATATGGCTGACTGGTGCTGA

>g8641.t1 Gene=g8641 Length=1587
MEKSKNGDNESGSSSGNEMTAEWVVKAQLKITQPKKKAASFTTSDCGARSTGSPCRIIYK
WTSDESKAHLTGKNQTEKTLKTRSQHTHDGADSSEIKHKHDNSKTLKSTCNIILTTDICP
SSLNNGTKITQDGCTTHTYTFSPDQTQVFREVSTHAQEPSITVSNEEEEKILVSRDVSCQ
TSDCEVIPIKKKSDSIKNKNGSRSSSVEGRRKAYSDHRRATDSIMASSSVRRSVEGNRLT
PSRTPRRMSPALSNPSAHSKEKKKPPRTVHIDVYCTGSEVDTSNSSNASSPNIVDDITNL
MTQAATVIDADDMLLKHRRIVTKNELPRKLMKAEQKASSTKLEITEQNDNEQQKQQQQLF
DFSRVLLQNNMNEKEEVNESKQMLFKKYLGDQRQIQKFNELKSLMHFRRQPSDDAISSNY
PNSSYSTVRDFTSSSLTSAAANSPSIVTFDECDWKDLDNAIHTGNFLTPAESIHNVDKND
ELMKMKDFKRLWSEPGSELLNQRKLMENFSLPSGNFSESDNSFRCQNSGNISDSSPSTVI
SYSHKKAISEAKIIKEVTPERKSIEASTHSSSLKSGNYSKDHLQLAQKFGSVIKSMRKPG
HHVGPVRNPSCLCETCKRWVLERDQVQGRERAYSFGETPITRTTFWKRNHRYYAQGRLIE
SSRKLDLLRYALEIRRNDLPPDSEASRQLKTELQNVQAASPVPVQYTSLHPFRAGNQSKT
SNFLSLSRCAAVTGKLEVRLMGCQDLLEDVPGRSRRDKDSISSPSGDLKSFVKGVTSRSS
SKSYSVKDDISSEIMAVIKLDNTTVAQTSWKPCSQQAWDQRFSIDLDKSRELEIGIYWRD
WRSLCAVKFLRLEEFIDDIRHGMALQLEPQGLLFAEIKFLNPMISRKPKLQRQKMIFNKQ
AKNIPRAKQMNINIATWGRLLKRSAPSQQQNNNAVQTPTSSNHPYGNGSSSVTGIQPVQL
IFDEPQQPLDPVETAGEIPNENVAGLSGQRPLGMHSSGSINSNDSIPPQPQPRNYQPPPP
VKQKKPQMPPALPPKMDQELHNALHAFDFLHKLSNDQEYHQRESSLSPQMPQQQQQQISL
DVDLLRPVLSMPPVVLMGMNAEHSVNSSGNSSPRLNIHSIPPSPIVEMPPSPAPYQLPLV
EFPTEDDAYEYDEHGGELVEIVTNFENLSIPSMPSQQPQQPFLMQQPSTSQYSQSSHHVP
PHMIQQQPVPHHVEMQQGINNNNNINNRQRQNVSRGLQYRDSAYESRRHSQSMVMSLDSF
RLLSVLGRGHFGKVILSQYRNTGEYFAIKALKKGDIIARDEIESLLSEKRIFEVANTMRH
PFLVNLFACFQTEQHVCFVMEYAAGGDLMMHIHTDVFSEPRAVFYASCVVLGLQYLHENK
IIYRDLKLDNLLLDTEGYVKIADFGLCKEGMGFGDRTGTFCGTPEFLAPEVLTETSYTRS
VDWWGLGVLIFEMLVGESPFPGDDEEEVFDSIVNDEVRYPRFLSLEAIAIMRRLLRKNPE
RRLGSSERDAEDVKRQAFFRGISWDDLLLRKVKPPFVPTIRSMEDVSNFDEEFTSEKPQL
TPPKEPRHLTDQEQDFFKDFSYMADWC

Protein features from InterProScan

Transcript Database ID Name Start End E.value
10 g8641.t1 CDD cd05589 STKc_PKN 1260 1585 0.0
9 g8641.t1 Coils Coil Coil 330 350 -
7 g8641.t1 Gene3D G3DSA:3.30.200.20 Phosphorylase Kinase; domain 1 1258 1560 6.6E-129
8 g8641.t1 Gene3D G3DSA:1.10.510.10 Transferase(Phosphotransferase) domain 1 1347 1539 6.6E-129
22 g8641.t1 MobiDBLite mobidb-lite consensus disorder prediction 1 21 -
23 g8641.t1 MobiDBLite mobidb-lite consensus disorder prediction 69 100 -
16 g8641.t1 MobiDBLite mobidb-lite consensus disorder prediction 193 219 -
18 g8641.t1 MobiDBLite mobidb-lite consensus disorder prediction 193 269 -
19 g8641.t1 MobiDBLite mobidb-lite consensus disorder prediction 221 256 -
20 g8641.t1 MobiDBLite mobidb-lite consensus disorder prediction 330 356 -
24 g8641.t1 MobiDBLite mobidb-lite consensus disorder prediction 338 356 -
17 g8641.t1 MobiDBLite mobidb-lite consensus disorder prediction 925 949 -
21 g8641.t1 MobiDBLite mobidb-lite consensus disorder prediction 1007 1030 -
26 g8641.t1 MobiDBLite mobidb-lite consensus disorder prediction 1010 1030 -
25 g8641.t1 MobiDBLite mobidb-lite consensus disorder prediction 1177 1198 -
3 g8641.t1 PANTHER PTHR24356 SERINE/THREONINE-PROTEIN KINASE 555 1587 0.0
4 g8641.t1 PANTHER PTHR24356:SF210 SERINE/THREONINE-PROTEIN KINASE N 555 1587 0.0
2 g8641.t1 Pfam PF00069 Protein kinase domain 1262 1513 5.4E-62
1 g8641.t1 Pfam PF00433 Protein kinase C terminal domain 1540 1582 2.0E-10
15 g8641.t1 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 1266 1289 -
14 g8641.t1 ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 1381 1393 -
28 g8641.t1 ProSiteProfiles PS50011 Protein kinase domain profile. 1260 1519 47.99
27 g8641.t1 ProSiteProfiles PS51285 AGC-kinase C-terminal domain profile. 1520 1587 17.754
11 g8641.t1 SMART SM00239 C2_3c 735 864 0.0041
13 g8641.t1 SMART SM00220 serkin_6 1260 1519 1.3E-95
12 g8641.t1 SMART SM00133 pkinase_C_6 1520 1584 2.1E-19
6 g8641.t1 SUPERFAMILY SSF49562 C2 domain (Calcium/lipid-binding domain, CaLB) 791 881 2.94E-8
5 g8641.t1 SUPERFAMILY SSF56112 Protein kinase-like (PK-like) 1257 1571 3.55E-90

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005524 ATP binding MF
GO:0004674 protein serine/threonine kinase activity MF
GO:0004672 protein kinase activity MF
GO:0006468 protein phosphorylation BP

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values