General information for g8641.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Serine/threonine-protein kinase N.
Parent gene
- The parent gene g8641 is located on chr_2: 32002721..32004049 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8641 | g8641.t3 | isoform | g8641.t3 | 31995095 | 31998000 |
| chr_2 | g8641 | g8641.t3 | exon | g8641.t3.exon1 | 31995095 | 31995198 |
| chr_2 | g8641 | g8641.t3 | exon | g8641.t3.exon2 | 31996173 | 31996273 |
| chr_2 | g8641 | g8641.t3 | cds | g8641.t3.CDS1 | 31996185 | 31996273 |
| chr_2 | g8641 | g8641.t3 | exon | g8641.t3.exon3 | 31997725 | 31998000 |
| chr_2 | g8641 | g8641.t3 | cds | g8641.t3.CDS2 | 31997725 | 31997959 |
| chr_2 | g8641 | g8641.t3 | TSS | g8641.t3 | NA | NA |
| chr_2 | g8641 | g8641.t3 | TTS | g8641.t3 | NA | NA |
Sequences
>g8641.t3 Gene=g8641 Length=481
GATATGTAAAAATAGCTGATTTTGGCTTGTGTAAAGAAGGAATGGGCTTTGGTGATAGAA
CAGGAACATTCTGTGGAACACCTGAGTTTCTCGCTCCAGAAGTATTAACAGAGACTTCTT
ATACACGTTCCGTCGACTGGTGGGGTCTAGGAGTTTTAATATTTGAAATGCTTGTTGGAG
AAAGTCCATTCCCTGGTGATGATGAGGAAGAAGTTTTTGATTCAATTGTCAATGATGAAG
TTCGATATCCACGCTTTTTGTCACTTGAAGCAATTGATCTTCATATTTGCATACTTCATA
TAAATTCATATAAGCTCTATAAGTTGCTCCAATTAATCCAAAATTTTTGCATCCAAGTGA
TTTGATGTCATTGAGCTATTTTTATTGAATTAAATTTTTCCAAATTTAAATCACTCTCTG
TTGATTCTTGATGAATTTCTTTTTTATCGTTGTCACTGCTTATAGAATTATCAAATTCCA
T
>g8641.t3 Gene=g8641 Length=107
MGFGDRTGTFCGTPEFLAPEVLTETSYTRSVDWWGLGVLIFEMLVGESPFPGDDEEEVFD
SIVNDEVRYPRFLSLEAIDLHICILHINSYKLYKLLQLIQNFCIQVI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g8641.t3 | Coils | Coil | Coil | 107 | 107 | - |
| 5 | g8641.t3 | Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 4 | 88 | 7.7E-31 |
| 2 | g8641.t3 | PANTHER | PTHR24356 | SERINE/THREONINE-PROTEIN KINASE | 4 | 80 | 3.3E-52 |
| 3 | g8641.t3 | PANTHER | PTHR24356:SF210 | SERINE/THREONINE-PROTEIN KINASE N | 4 | 80 | 3.3E-52 |
| 1 | g8641.t3 | Pfam | PF00069 | Protein kinase domain | 8 | 89 | 1.9E-17 |
| 7 | g8641.t3 | ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 104 | 14.506 |
| 4 | g8641.t3 | SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 4 | 100 | 7.72E-25 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005524 | ATP binding | MF |
| GO:0004672 | protein kinase activity | MF |
| GO:0006468 | protein phosphorylation | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
