General information for g8641.t6
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g8641 is located on chr_2: 32002721..32004049 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8641 | g8641.t6 | isoform | g8641.t6 | 32002472 | 32003376 |
| chr_2 | g8641 | g8641.t6 | exon | g8641.t6.exon1 | 32002472 | 32002655 |
| chr_2 | g8641 | g8641.t6 | cds | g8641.t6.CDS1 | 32002474 | 32002655 |
| chr_2 | g8641 | g8641.t6 | exon | g8641.t6.exon2 | 32002721 | 32002997 |
| chr_2 | g8641 | g8641.t6 | cds | g8641.t6.CDS2 | 32002721 | 32002976 |
| chr_2 | g8641 | g8641.t6 | exon | g8641.t6.exon3 | 32003064 | 32003376 |
| chr_2 | g8641 | g8641.t6 | TSS | g8641.t6 | NA | NA |
| chr_2 | g8641 | g8641.t6 | TTS | g8641.t6 | NA | NA |
Sequences
>g8641.t6 Gene=g8641 Length=774
ACTCAAGTATTTCGTGAAGTTAGTACACATGCACAAGAACCTTCAATCACTGTATCGAAT
GAAGAAGAAGAAAAAATATTAGTATCGAGAGATGTGAGCTGTCAGACAAGCGATTGCGAA
GTGATACCAATCAAGAAAAAGTCTGACAGCATTAAAAATAAAAATGGTAGTCGATCGTCA
AGTGTAGAAGGACGAAGAAAAGCATATAGTGACCATAGAAGAGCAACTGACTCTATAATG
GCATCTTCATCAGTGAGACGAAGCGTAGAAGGAAATCGTTTAACGGTGCGTTTCAAAATT
AGCATAGGAATTTCCTTCAAGAACACCAAGAAGAATGTCTCCTGCTCTTTCAAATCCTTC
GGCACATTCAAAAGAAAAGAAAAAACCACCAAGAACTGTTCATATTGATGTTTATTGCAC
AGGCTCAGAAGTTGATACATCAAATAGCTCAAATGCTTCATCACCAAATATTGTCGACGA
TATAACTAATTTAATGACACAGGCGGCGACAGTTATAGATGCTGATGATATGTTATTAAA
ACATAGAAGAATCGTTACTAAAAATGAATTGCCTAGAAAGCTAATGAAAGAACAAAAAGC
TTCCTCAACAAAACTAGAAATAACAGAGCAAAATGACAATGAACAACAAAAGCAACAGCA
GCAATTGTTTGACTTTTCACGTGTATTGCTACAAAATAATATGAATGAAAAGGAAGAAGT
CAATGAAAGTAAACAAATGCTGTTTAAAAAATATCTTGGCGATCAACGTCAAAT
>g8641.t6 Gene=g8641 Length=146
MSPALSNPSAHSKEKKKPPRTVHIDVYCTGSEVDTSNSSNASSPNIVDDITNLMTQAATV
IDADDMLLKHRRIVTKNELPRKLMKEQKASSTKLEITEQNDNEQQKQQQQLFDFSRVLLQ
NNMNEKEEVNESKQMLFKKYLGDQRQ
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 3 | g8641.t6 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - |
| 5 | g8641.t6 | MobiDBLite | mobidb-lite | consensus disorder prediction | 82 | 109 | - |
| 1 | g8641.t6 | MobiDBLite | mobidb-lite | consensus disorder prediction | 93 | 109 | - |
| 4 | g8641.t6 | MobiDBLite | mobidb-lite | consensus disorder prediction | 125 | 146 | - |
| 2 | g8641.t6 | MobiDBLite | mobidb-lite | consensus disorder prediction | 126 | 146 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed