Gene loci information

Transcript annotation

  • This transcript has been annotated as Anaphase-promoting complex subunit 2.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g8648 g8648.t1 TSS g8648.t1 32081963 32081963
chr_2 g8648 g8648.t1 isoform g8648.t1 32082040 32084438
chr_2 g8648 g8648.t1 exon g8648.t1.exon1 32082040 32082093
chr_2 g8648 g8648.t1 cds g8648.t1.CDS1 32082040 32082093
chr_2 g8648 g8648.t1 exon g8648.t1.exon2 32082159 32084438
chr_2 g8648 g8648.t1 cds g8648.t1.CDS2 32082159 32084438
chr_2 g8648 g8648.t1 TTS g8648.t1 32084553 32084553

Sequences

>g8648.t1 Gene=g8648 Length=2334
ATGGAAGGATCGTGGAATAAGCTTAAATTTTGTTTTCCTATAATTTCTCATAAGTTAGAG
TACAATGAAACTAATCGTGAAAAGCTTGATGAACTTTGTAAGGAATTGATTTCACTGAAT
GTTCTTGATGAAATTACACAAATGCTGTGCTTGGAAATTCAAAACACATTATTGAAACAA
ATTGTTCCTGAATTTTGGAAACCATTTTTCGAAAATAATCTTGAAAGTCAATCAAATAAT
AAAGCCAAACAAAAATGTGAATTTCAAATATTTAGAAATGCAATCACTCAACTTTTCCGT
CGATATCAACTTCTCAATAGAATTATGGTTCAAGTAAAATATCTAGAAAGCAAGACAGGA
AAAAAGTTGATTTATAATTTTGATGAAGTTTTTAAATCAAGTCTTTTATCACAACTACCT
GACAGTTTCACAAATATTGTTCATGCCTTCTATTACGTTTCATTCAAAGTATTTATAAAT
ACAAAAGCAGATAATGATGATGATGAAGAGTTTATGGAAGAACGTGAAGAATGTTTAGGT
TGTGAAATGCTTCAACTTAAATGTCAATGTCAAGAGCTTGTGAATGCATTTGGTGAGATA
AATTTGTGTCTAACAAAAATGGGTTTGCTCGATAGAATTTCAGGCTATACATTAACTCAT
CTCATTCAAAACGAGATATATAATCATATACAAAAGACATGCAAAGGAAATTTTGACACA
CAACATTTAAAGAATTTAGAAAAATGGCTCGATACAATTGTCTTAGAATGGCTCACTAGA
ATTTACAACAATGGCTCTTCTAAATTGGATCCAACAAACACAAAAATTCGTGAATCAATT
AATTGCTTTCAAATGAAACTGAAATATTTTCTTTATGAAAAATATGCCAATTCAATTATC
GATCAATTTTTCAATATAATCATTGAGTTTCCTGAGTCGCAACCTGCAATTGATGATTTG
AAATTATGCATGGAAAAATTGGATCTAAGAGCACATTTAGTTGAAACATTAAAGACTTCA
CTTAAAACAAGATTGTTGCATCAAGGCGTTGATACATGTGATATCATAACTGGTTATGTT
GCAACAATTAAGACAATGAGACATTTGGAGAAAAGTGGTATTCTTCTGCAAACATGTACA
GAACCCGTTAAAGAATATTTGAGAAAATGTAGACAAGATACAGTGCGTTGTGTAGTTACC
AGTTTGATTGAAGAAACACCTTCAGATTTAGCTGAAGAATTAGCAAGAAGTGAAGCAATA
AAAGCAGAAGAAAATGAACGAAATAAGGATGAGATGAATAATTGGCAAGAGTGGAGTCCA
GATCCAGTTGATGCAATTACTGACTCAGAAAAACATTCACGCAATAGAAAAAGTGACATA
ATTTCAATGATTGTAGACATCTATGGAAGTAAAGAATTATTCGTGAATGAATATCGAAAT
TTACTTGCTGAGAGATTACTCATAAATCTTGATTTTAATCCAGAGAAAGAGATAAGAAAT
CTTGAATTACTAAAATTACGTTTTGGTGAAAATCTTTTGCACAGTTGTGAAGTCATGCTA
AGAGATATTAGTGACTCAAAAAGAATCAATGCACACATTCTCGAATCTGAAACATTTACA
TCTACTGCTGAAAAAGATGAACCTTCTGTCTCTGCTCTCATTGTATCATCTCAATTTTGG
CCTACTTTCAAAAAAGAAACGATGGAGTTGCCCGATGAGATGAACAAGATTTTTGAAAGA
TACAAAAAATCTTATGAAGAATATAAAGGAAATCGAACATTATGTTGGTCAGCGTTAAAC
GGAAAAGTCAATATTGAAATTGAGATCAACGATAAAAAGTTAGATTTAACAGTAACTCCT
GCCCAAGCAACCATCATTTGGCATTTTCAAAATCAAAAAGAATGGCAATTAGATAGCTTG
AGTACAGTCATTAATATGCCTCCAAGTGTACTAAGAAGAAGAATTGGATTTTGGCAGTTA
CAAGGGTTAATTCGTGAAACTAAAGAGAATTTATTTGTACTATGTGATGAGAAACAGCAA
GATTGTGAAATGGAGACACAAGTGAATGTTGTATTAGATGAGGAAGAAACAATGGTTTCT
GCAAATGATCAAAGAGAAGAAGAATTGCAAGTCTTTTGGTCATATATTCTTGGAATGCTG
ACTAATTTAGACTCAATGCCACTCGAGAGAATTCATCAAATGTTGAAGCTTTTTGCCTCA
CAAGGTCCAGGTTTTGAATTTTCGCAAGATGAACTGAAGAGTTTTCTGCAAAGGAAAGTT
AGAGAGCACAAGTTGGTTTATGCACTTGGTGTTTATCAGTTACCAAAGAATTAA

>g8648.t1 Gene=g8648 Length=777
MEGSWNKLKFCFPIISHKLEYNETNREKLDELCKELISLNVLDEITQMLCLEIQNTLLKQ
IVPEFWKPFFENNLESQSNNKAKQKCEFQIFRNAITQLFRRYQLLNRIMVQVKYLESKTG
KKLIYNFDEVFKSSLLSQLPDSFTNIVHAFYYVSFKVFINTKADNDDDEEFMEEREECLG
CEMLQLKCQCQELVNAFGEINLCLTKMGLLDRISGYTLTHLIQNEIYNHIQKTCKGNFDT
QHLKNLEKWLDTIVLEWLTRIYNNGSSKLDPTNTKIRESINCFQMKLKYFLYEKYANSII
DQFFNIIIEFPESQPAIDDLKLCMEKLDLRAHLVETLKTSLKTRLLHQGVDTCDIITGYV
ATIKTMRHLEKSGILLQTCTEPVKEYLRKCRQDTVRCVVTSLIEETPSDLAEELARSEAI
KAEENERNKDEMNNWQEWSPDPVDAITDSEKHSRNRKSDIISMIVDIYGSKELFVNEYRN
LLAERLLINLDFNPEKEIRNLELLKLRFGENLLHSCEVMLRDISDSKRINAHILESETFT
STAEKDEPSVSALIVSSQFWPTFKKETMELPDEMNKIFERYKKSYEEYKGNRTLCWSALN
GKVNIEIEINDKKLDLTVTPAQATIIWHFQNQKEWQLDSLSTVINMPPSVLRRRIGFWQL
QGLIRETKENLFVLCDEKQQDCEMETQVNVVLDEEETMVSANDQREEELQVFWSYILGML
TNLDSMPLERIHQMLKLFASQGPGFEFSQDELKSFLQRKVREHKLVYALGVYQLPKN

Protein features from InterProScan

Transcript Database ID Name Start End E.value
11 g8648.t1 Gene3D G3DSA:1.20.1310.10 Cullin Repeats 442 538 1.4E-7
12 g8648.t1 Gene3D G3DSA:4.10.1030.10 Ring Box Chain A; domain 5 548 617 4.5E-8
13 g8648.t1 Gene3D G3DSA:1.10.10.10 winged helix repressor DNA binding domain 692 777 3.2E-35
9 g8648.t1 MobiDBLite mobidb-lite consensus disorder prediction 419 434 -
10 g8648.t1 MobiDBLite mobidb-lite consensus disorder prediction 419 442 -
3 g8648.t1 PANTHER PTHR45957:SF1 ANAPHASE-PROMOTING COMPLEX SUBUNIT 2 22 776 1.1E-216
4 g8648.t1 PANTHER PTHR45957 ANAPHASE-PROMOTING COMPLEX SUBUNIT 2 22 776 1.1E-216
2 g8648.t1 Pfam PF00888 Cullin family 282 685 6.0E-21
1 g8648.t1 Pfam PF08672 Anaphase promoting complex (APC) subunit 2 715 774 2.8E-24
14 g8648.t1 ProSiteProfiles PS50069 Cullin family profile. 461 659 26.216
8 g8648.t1 SMART SM00182 cul_2 459 609 3.1E-16
7 g8648.t1 SMART SM01013 APC2_2 715 774 4.8E-30
6 g8648.t1 SUPERFAMILY SSF75632 Cullin homology domain 435 677 3.27E-63
5 g8648.t1 SUPERFAMILY SSF46785 Winged helix DNA-binding domain 704 775 6.53E-22

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006511 ubiquitin-dependent protein catabolic process BP
GO:0031625 ubiquitin protein ligase binding MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values