General information for g8670.t12
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Cyclin G.
Parent gene
- The parent gene g8670 is located on chr_2: 32175512..32177168 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8670 | g8670.t12 | TSS | g8670.t12 | 32171909 | 32171909 |
| chr_2 | g8670 | g8670.t12 | isoform | g8670.t12 | 32171987 | 32174855 |
| chr_2 | g8670 | g8670.t12 | exon | g8670.t12.exon1 | 32171987 | 32172000 |
| chr_2 | g8670 | g8670.t12 | exon | g8670.t12.exon2 | 32173919 | 32174200 |
| chr_2 | g8670 | g8670.t12 | cds | g8670.t12.CDS1 | 32173960 | 32174200 |
| chr_2 | g8670 | g8670.t12 | exon | g8670.t12.exon3 | 32174264 | 32174481 |
| chr_2 | g8670 | g8670.t12 | cds | g8670.t12.CDS2 | 32174264 | 32174481 |
| chr_2 | g8670 | g8670.t12 | exon | g8670.t12.exon4 | 32174618 | 32174855 |
| chr_2 | g8670 | g8670.t12 | cds | g8670.t12.CDS3 | 32174618 | 32174854 |
| chr_2 | g8670 | g8670.t12 | TTS | g8670.t12 | NA | NA |
Sequences
>g8670.t12 Gene=g8670 Length=752
CAAGGAAGCACCGGGTCCTGAAATTGGCCAGCCGCCCTTATCAAATCAACGTGTCATGTC
GGTTCGCTATTCTGCGGATTCTACTATTGTCGCTGTCTCATCTACATCAACCGACTTTAG
TGCGATGAACAATAATAATAATGACATCATCGCCTCGTCTGGCCAAGCTTATCATCAAAT
GAATAGTATGAGCAGTAACAACATAGGAGGAAAGACTCAAGCGGTGATCGATAACGGAAT
AAGCCAAAAACAACATCAACAACAGGGCAGGCCAAAAATGGAAGGAACTCCGGATGCTAA
AAATGCATCATGTATGAGTTCTAATTTTAACATCTCTACCAACATAAACAATAACAATAT
TCAAGAACAACAACAACAACATAGCAATTCCAACAACATGGCTCATCATCATCTTTTAAA
TGCTAGTGCTCAAGACTTATTTTCACAATTACACGAAGCACTTTCATTAGAGCCCAAATA
TCAACCGAACTTATTTTTACCTCAGCAATCAAATGATGGTGAAATAACAATCGGTACAAG
AGACGGTGCTGCACATGTATTAAGATGCCTGAAAGTCTGGTATGATTTGCCAAATGATGT
CCTTTTTAATGCAGTTAATGCAGTTGATCGATTTTTAACCAAAATGAAAGTACGACCAAA
ACATATGGCTTGCATTTCTGTTGGATCTTTGCATTTGGCTATCAAACAATTGGGACTTGA
AGGCATTGATACAGAAGATTTAGTTGCGATTT
>g8670.t12 Gene=g8670 Length=232
MSVRYSADSTIVAVSSTSTDFSAMNNNNNDIIASSGQAYHQMNSMSSNNIGGKTQAVIDN
GISQKQHQQQGRPKMEGTPDAKNASCMSSNFNISTNINNNNIQEQQQQHSNSNNMAHHHL
LNASAQDLFSQLHEALSLEPKYQPNLFLPQQSNDGEITIGTRDGAAHVLRCLKVWYDLPN
DVLFNAVNAVDRFLTKMKVRPKHMACISVGSLHLAIKQLGLEGIDTEDLVAI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g8670.t12 | CDD | cd00043 | CYCLIN | 176 | 232 | 6.02179E-6 |
| 6 | g8670.t12 | Gene3D | G3DSA:1.10.472.10 | - | 150 | 232 | 1.2E-10 |
| 5 | g8670.t12 | MobiDBLite | mobidb-lite | consensus disorder prediction | 62 | 82 | - |
| 2 | g8670.t12 | PANTHER | PTHR10177 | CYCLINS | 102 | 232 | 7.2E-49 |
| 3 | g8670.t12 | PANTHER | PTHR10177:SF473 | CYCLIN G | 102 | 232 | 7.2E-49 |
| 1 | g8670.t12 | Pfam | PF00134 | Cyclin, N-terminal domain | 140 | 222 | 4.4E-8 |
| 4 | g8670.t12 | SUPERFAMILY | SSF47954 | Cyclin-like | 133 | 230 | 8.97E-15 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0051726 | regulation of cell cycle | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
