Gene loci information

Transcript annotation

  • This transcript has been annotated as Cyclin G.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g8670 g8670.t15 TSS g8670.t15 32171909 32171909
chr_2 g8670 g8670.t15 isoform g8670.t15 32171987 32175447
chr_2 g8670 g8670.t15 exon g8670.t15.exon1 32171987 32172000
chr_2 g8670 g8670.t15 exon g8670.t15.exon2 32173919 32174200
chr_2 g8670 g8670.t15 cds g8670.t15.CDS1 32173960 32174200
chr_2 g8670 g8670.t15 exon g8670.t15.exon3 32174264 32174481
chr_2 g8670 g8670.t15 cds g8670.t15.CDS2 32174264 32174481
chr_2 g8670 g8670.t15 exon g8670.t15.exon4 32174618 32174860
chr_2 g8670 g8670.t15 cds g8670.t15.CDS3 32174618 32174860
chr_2 g8670 g8670.t15 exon g8670.t15.exon5 32175085 32175447
chr_2 g8670 g8670.t15 cds g8670.t15.CDS4 32175085 32175447
chr_2 g8670 g8670.t15 TTS g8670.t15 32176243 32176243

Sequences

>g8670.t15 Gene=g8670 Length=1120
CAAGGAAGCACCGGGTCCTGAAATTGGCCAGCCGCCCTTATCAAATCAACGTGTCATGTC
GGTTCGCTATTCTGCGGATTCTACTATTGTCGCTGTCTCATCTACATCAACCGACTTTAG
TGCGATGAACAATAATAATAATGACATCATCGCCTCGTCTGGCCAAGCTTATCATCAAAT
GAATAGTATGAGCAGTAACAACATAGGAGGAAAGACTCAAGCGGTGATCGATAACGGAAT
AAGCCAAAAACAACATCAACAACAGGGCAGGCCAAAAATGGAAGGAACTCCGGATGCTAA
AAATGCATCATGTATGAGTTCTAATTTTAACATCTCTACCAACATAAACAATAACAATAT
TCAAGAACAACAACAACAACATAGCAATTCCAACAACATGGCTCATCATCATCTTTTAAA
TGCTAGTGCTCAAGACTTATTTTCACAATTACACGAAGCACTTTCATTAGAGCCCAAATA
TCAACCGAACTTATTTTTACCTCAGCAATCAAATGATGGTGAAATAACAATCGGTACAAG
AGACGGTGCTGCACATGTATTAAGATGCCTGAAAGTCTGGTATGATTTGCCAAATGATGT
CCTTTTTAATGCAGTTAATGCAGTTGATCGATTTTTAACCAAAATGAAAGTACGACCAAA
ACATATGGCTTGCATTTCTGTTGGATCTTTGCATTTGGCTATCAAACAATTGGGACTTGA
AGGCATTGATACAGAAGATTTAGTTGCGATTTCTCAATGTCGTTGCACTGCACGTGATCT
TGAAAGAATGACAGAAATTATTCACAATAAATTGGGAGTTCAAATGAATTCAGCACCTAT
CACTGGTTTGACCTTCATTCGACTCTTTTACTACATCTTCCGTTTGACCGCCATCGAATT
GGACCTTCAAAATTTTTATGATTCCTCAATTGTCTTATCTGATCTCGAACAAAGAATGGA
AATTTTGGCATGTGATGCAAATTGTTCCAGCATTCGTCCATCTGAATTAGCTCTCGTTGC
AATTTGTACTCAAATGGATGCTTGCATCAGTCAACTTGAAGCAGGATCACATCAAATTCA
TGGTTTGGTTGATTATGCCATTCAATTGCAAAAATTATGC

>g8670.t15 Gene=g8670 Length=355
MSVRYSADSTIVAVSSTSTDFSAMNNNNNDIIASSGQAYHQMNSMSSNNIGGKTQAVIDN
GISQKQHQQQGRPKMEGTPDAKNASCMSSNFNISTNINNNNIQEQQQQHSNSNNMAHHHL
LNASAQDLFSQLHEALSLEPKYQPNLFLPQQSNDGEITIGTRDGAAHVLRCLKVWYDLPN
DVLFNAVNAVDRFLTKMKVRPKHMACISVGSLHLAIKQLGLEGIDTEDLVAISQCRCTAR
DLERMTEIIHNKLGVQMNSAPITGLTFIRLFYYIFRLTAIELDLQNFYDSSIVLSDLEQR
MEILACDANCSSIRPSELALVAICTQMDACISQLEAGSHQIHGLVDYAIQLQKLC

Protein features from InterProScan

Transcript Database ID Name Start End E.value
9 g8670.t15 CDD cd00043 CYCLIN 176 250 2.54482E-7
8 g8670.t15 Gene3D G3DSA:1.10.472.10 - 132 347 1.4E-19
7 g8670.t15 Gene3D G3DSA:1.10.472.10 - 145 260 1.4E-19
6 g8670.t15 MobiDBLite mobidb-lite consensus disorder prediction 62 82 -
2 g8670.t15 PANTHER PTHR10177 CYCLINS 103 354 3.4E-92
3 g8670.t15 PANTHER PTHR10177:SF473 CYCLIN G 103 354 3.4E-92
1 g8670.t15 Pfam PF00134 Cyclin, N-terminal domain 140 257 4.0E-11
5 g8670.t15 SMART SM00385 cyclin_7 167 251 4.5E-5
4 g8670.t15 SUPERFAMILY SSF47954 Cyclin-like 133 258 6.12E-21

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0051726 regulation of cell cycle BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values