Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Cyclin G.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g8670 g8670.t16 TSS g8670.t16 32171909 32171909
chr_2 g8670 g8670.t16 isoform g8670.t16 32171987 32175450
chr_2 g8670 g8670.t16 exon g8670.t16.exon1 32171987 32172007
chr_2 g8670 g8670.t16 exon g8670.t16.exon2 32173919 32174200
chr_2 g8670 g8670.t16 cds g8670.t16.CDS1 32173960 32174200
chr_2 g8670 g8670.t16 exon g8670.t16.exon3 32174264 32174481
chr_2 g8670 g8670.t16 cds g8670.t16.CDS2 32174264 32174481
chr_2 g8670 g8670.t16 exon g8670.t16.exon4 32174618 32174864
chr_2 g8670 g8670.t16 cds g8670.t16.CDS3 32174618 32174864
chr_2 g8670 g8670.t16 exon g8670.t16.exon5 32175085 32175450
chr_2 g8670 g8670.t16 cds g8670.t16.CDS4 32175085 32175104
chr_2 g8670 g8670.t16 TTS g8670.t16 32176243 32176243

Sequences

>g8670.t16 Gene=g8670 Length=1134
CAAGGAAGCACCGGGTATGTAGTCCTGAAATTGGCCAGCCGCCCTTATCAAATCAACGTG
TCATGTCGGTTCGCTATTCTGCGGATTCTACTATTGTCGCTGTCTCATCTACATCAACCG
ACTTTAGTGCGATGAACAATAATAATAATGACATCATCGCCTCGTCTGGCCAAGCTTATC
ATCAAATGAATAGTATGAGCAGTAACAACATAGGAGGAAAGACTCAAGCGGTGATCGATA
ACGGAATAAGCCAAAAACAACATCAACAACAGGGCAGGCCAAAAATGGAAGGAACTCCGG
ATGCTAAAAATGCATCATGTATGAGTTCTAATTTTAACATCTCTACCAACATAAACAATA
ACAATATTCAAGAACAACAACAACAACATAGCAATTCCAACAACATGGCTCATCATCATC
TTTTAAATGCTAGTGCTCAAGACTTATTTTCACAATTACACGAAGCACTTTCATTAGAGC
CCAAATATCAACCGAACTTATTTTTACCTCAGCAATCAAATGATGGTGAAATAACAATCG
GTACAAGAGACGGTGCTGCACATGTATTAAGATGCCTGAAAGTCTGGTATGATTTGCCAA
ATGATGTCCTTTTTAATGCAGTTAATGCAGTTGATCGATTTTTAACCAAAATGAAAGTAC
GACCAAAACATATGGCTTGCATTTCTGTTGGATCTTTGCATTTGGCTATCAAACAATTGG
GACTTGAAGGCATTGATACAGAAGATTTAGTTGCGATTTCTCAAGTAATGTCGTTGCACT
GCACGTGATCTTGAAAGAATGACAGAAATTATTCACAATAAATTGGGAGTTCAAATGAAT
TCAGCACCTATCACTGGTTTGACCTTCATTCGACTCTTTTACTACATCTTCCGTTTGACC
GCCATCGAATTGGACCTTCAAAATTTTTATGATTCCTCAATTGTCTTATCTGATCTCGAA
CAAAGAATGGAAATTTTGGCATGTGATGCAAATTGTTCCAGCATTCGTCCATCTGAATTA
GCTCTCGTTGCAATTTGTACTCAAATGGATGCTTGCATCAGTCAACTTGAAGCAGGATCA
CATCAAATTCATGGTTTGGTTGATTATGCCATTCAATTGCAAAAATTATGCAGA

>g8670.t16 Gene=g8670 Length=241
MSVRYSADSTIVAVSSTSTDFSAMNNNNNDIIASSGQAYHQMNSMSSNNIGGKTQAVIDN
GISQKQHQQQGRPKMEGTPDAKNASCMSSNFNISTNINNNNIQEQQQQHSNSNNMAHHHL
LNASAQDLFSQLHEALSLEPKYQPNLFLPQQSNDGEITIGTRDGAAHVLRCLKVWYDLPN
DVLFNAVNAVDRFLTKMKVRPKHMACISVGSLHLAIKQLGLEGIDTEDLVAISQVMSLHC
T

Protein features from InterProScan

Transcript Database ID Name Start End E.value
7 g8670.t16 CDD cd00043 CYCLIN 176 237 2.91788E-7
6 g8670.t16 Gene3D G3DSA:1.10.472.10 - 150 239 5.6E-11
5 g8670.t16 MobiDBLite mobidb-lite consensus disorder prediction 62 82 -
2 g8670.t16 PANTHER PTHR10177 CYCLINS 102 235 2.4E-51
3 g8670.t16 PANTHER PTHR10177:SF473 CYCLIN G 102 235 2.4E-51
1 g8670.t16 Pfam PF00134 Cyclin, N-terminal domain 140 232 2.0E-8
4 g8670.t16 SUPERFAMILY SSF47954 Cyclin-like 133 235 1.82E-15

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0051726 regulation of cell cycle BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values