General information for g8670.t17
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Cyclin G.
Parent gene
- The parent gene g8670 is located on chr_2: 32175512..32177168 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8670 | g8670.t17 | TSS | g8670.t17 | 32171909 | 32171909 |
| chr_2 | g8670 | g8670.t17 | isoform | g8670.t17 | 32171987 | 32175802 |
| chr_2 | g8670 | g8670.t17 | exon | g8670.t17.exon1 | 32171987 | 32172007 |
| chr_2 | g8670 | g8670.t17 | exon | g8670.t17.exon2 | 32173936 | 32174200 |
| chr_2 | g8670 | g8670.t17 | cds | g8670.t17.CDS1 | 32173960 | 32174200 |
| chr_2 | g8670 | g8670.t17 | exon | g8670.t17.exon3 | 32174264 | 32174481 |
| chr_2 | g8670 | g8670.t17 | cds | g8670.t17.CDS2 | 32174264 | 32174481 |
| chr_2 | g8670 | g8670.t17 | exon | g8670.t17.exon4 | 32174618 | 32174860 |
| chr_2 | g8670 | g8670.t17 | cds | g8670.t17.CDS3 | 32174618 | 32174860 |
| chr_2 | g8670 | g8670.t17 | exon | g8670.t17.exon5 | 32175085 | 32175450 |
| chr_2 | g8670 | g8670.t17 | cds | g8670.t17.CDS4 | 32175085 | 32175450 |
| chr_2 | g8670 | g8670.t17 | exon | g8670.t17.exon6 | 32175512 | 32175802 |
| chr_2 | g8670 | g8670.t17 | cds | g8670.t17.CDS5 | 32175512 | 32175802 |
| chr_2 | g8670 | g8670.t17 | TTS | g8670.t17 | 32176243 | 32176243 |
Sequences
>g8670.t17 Gene=g8670 Length=1404
CAAGGAAGCACCGGGTATGTACCGCCCTTATCAAATCAACGTGTCATGTCGGTTCGCTAT
TCTGCGGATTCTACTATTGTCGCTGTCTCATCTACATCAACCGACTTTAGTGCGATGAAC
AATAATAATAATGACATCATCGCCTCGTCTGGCCAAGCTTATCATCAAATGAATAGTATG
AGCAGTAACAACATAGGAGGAAAGACTCAAGCGGTGATCGATAACGGAATAAGCCAAAAA
CAACATCAACAACAGGGCAGGCCAAAAATGGAAGGAACTCCGGATGCTAAAAATGCATCA
TGTATGAGTTCTAATTTTAACATCTCTACCAACATAAACAATAACAATATTCAAGAACAA
CAACAACAACATAGCAATTCCAACAACATGGCTCATCATCATCTTTTAAATGCTAGTGCT
CAAGACTTATTTTCACAATTACACGAAGCACTTTCATTAGAGCCCAAATATCAACCGAAC
TTATTTTTACCTCAGCAATCAAATGATGGTGAAATAACAATCGGTACAAGAGACGGTGCT
GCACATGTATTAAGATGCCTGAAAGTCTGGTATGATTTGCCAAATGATGTCCTTTTTAAT
GCAGTTAATGCAGTTGATCGATTTTTAACCAAAATGAAAGTACGACCAAAACATATGGCT
TGCATTTCTGTTGGATCTTTGCATTTGGCTATCAAACAATTGGGACTTGAAGGCATTGAT
ACAGAAGATTTAGTTGCGATTTCTCAATGTCGTTGCACTGCACGTGATCTTGAAAGAATG
ACAGAAATTATTCACAATAAATTGGGAGTTCAAATGAATTCAGCACCTATCACTGGTTTG
ACCTTCATTCGACTCTTTTACTACATCTTCCGTTTGACCGCCATCGAATTGGACCTTCAA
AATTTTTATGATTCCTCAATTGTCTTATCTGATCTCGAACAAAGAATGGAAATTTTGGCA
TGTGATGCAAATTGTTCCAGCATTCGTCCATCTGAATTAGCTCTCGTTGCAATTTGTACT
CAAATGGATGCTTGCATCAGTCAACTTGAAGCAGGATCACATCAAATTCATGGTTTGGTT
GATTATGCCATTCAATTGCAAAAATTATGCAGAATTCCTGACTCGTCATTCTTTCACACT
CATGAATCAGTCGTAAGAATTCTCTCCAACTACAATGGTCAACAAAAAATGCCCTATCGT
CAACGTCTTGTATGGAAATTAAGTTCTAGAACATTGAGATCATTGAGGCCGACAGATAAA
TTGAAAGTCTCCTCATATTTGCCAACTATTGAAGAAGACAATAATTCACAACTTCGTTAT
AGAACAGGAAGTGTTTCATCAGAAGATGGCTCAGAAGAAGATTGGCCAACATCACCAATT
GTCGCCGTTTGTGAAGAATGCTAA
>g8670.t17 Gene=g8670 Length=452
MSVRYSADSTIVAVSSTSTDFSAMNNNNNDIIASSGQAYHQMNSMSSNNIGGKTQAVIDN
GISQKQHQQQGRPKMEGTPDAKNASCMSSNFNISTNINNNNIQEQQQQHSNSNNMAHHHL
LNASAQDLFSQLHEALSLEPKYQPNLFLPQQSNDGEITIGTRDGAAHVLRCLKVWYDLPN
DVLFNAVNAVDRFLTKMKVRPKHMACISVGSLHLAIKQLGLEGIDTEDLVAISQCRCTAR
DLERMTEIIHNKLGVQMNSAPITGLTFIRLFYYIFRLTAIELDLQNFYDSSIVLSDLEQR
MEILACDANCSSIRPSELALVAICTQMDACISQLEAGSHQIHGLVDYAIQLQKLCRIPDS
SFFHTHESVVRILSNYNGQQKMPYRQRLVWKLSSRTLRSLRPTDKLKVSSYLPTIEEDNN
SQLRYRTGSVSSEDGSEEDWPTSPIVAVCEEC
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g8670.t17 | CDD | cd00043 | CYCLIN | 176 | 250 | 2.10057E-7 |
| 8 | g8670.t17 | Gene3D | G3DSA:1.10.472.10 | - | 132 | 347 | 1.4E-19 |
| 7 | g8670.t17 | Gene3D | G3DSA:1.10.472.10 | - | 145 | 260 | 1.4E-19 |
| 6 | g8670.t17 | MobiDBLite | mobidb-lite | consensus disorder prediction | 62 | 82 | - |
| 2 | g8670.t17 | PANTHER | PTHR10177 | CYCLINS | 104 | 414 | 7.8E-111 |
| 3 | g8670.t17 | PANTHER | PTHR10177:SF473 | CYCLIN G | 104 | 414 | 7.8E-111 |
| 1 | g8670.t17 | Pfam | PF00134 | Cyclin, N-terminal domain | 140 | 257 | 6.5E-11 |
| 5 | g8670.t17 | SMART | SM00385 | cyclin_7 | 167 | 251 | 4.5E-5 |
| 4 | g8670.t17 | SUPERFAMILY | SSF47954 | Cyclin-like | 133 | 258 | 1.09E-20 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0051726 | regulation of cell cycle | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
