General information for g8670.t18
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Cyclin G.
Parent gene
- The parent gene g8670 is located on chr_2: 32175512..32177168 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8670 | g8670.t18 | TSS | g8670.t18 | 32171909 | 32171909 |
| chr_2 | g8670 | g8670.t18 | isoform | g8670.t18 | 32171987 | 32175802 |
| chr_2 | g8670 | g8670.t18 | exon | g8670.t18.exon1 | 32171987 | 32172000 |
| chr_2 | g8670 | g8670.t18 | exon | g8670.t18.exon2 | 32173919 | 32174200 |
| chr_2 | g8670 | g8670.t18 | exon | g8670.t18.exon3 | 32174264 | 32174509 |
| chr_2 | g8670 | g8670.t18 | exon | g8670.t18.exon4 | 32175085 | 32175450 |
| chr_2 | g8670 | g8670.t18 | cds | g8670.t18.CDS1 | 32175115 | 32175450 |
| chr_2 | g8670 | g8670.t18 | exon | g8670.t18.exon5 | 32175512 | 32175802 |
| chr_2 | g8670 | g8670.t18 | cds | g8670.t18.CDS2 | 32175512 | 32175802 |
| chr_2 | g8670 | g8670.t18 | TTS | g8670.t18 | 32176243 | 32176243 |
Sequences
>g8670.t18 Gene=g8670 Length=1199
CAAGGAAGCACCGGGTCCTGAAATTGGCCAGCCGCCCTTATCAAATCAACGTGTCATGTC
GGTTCGCTATTCTGCGGATTCTACTATTGTCGCTGTCTCATCTACATCAACCGACTTTAG
TGCGATGAACAATAATAATAATGACATCATCGCCTCGTCTGGCCAAGCTTATCATCAAAT
GAATAGTATGAGCAGTAACAACATAGGAGGAAAGACTCAAGCGGTGATCGATAACGGAAT
AAGCCAAAAACAACATCAACAACAGGGCAGGCCAAAAATGGAAGGAACTCCGGATGCTAA
AAATGCATCATGTATGAGTTCTAATTTTAACATCTCTACCAACATAAACAATAACAATAT
TCAAGAACAACAACAACAACATAGCAATTCCAACAACATGGCTCATCATCATCTTTTAAA
TGCTAGTGCTCAAGACTTATTTTCACAATTACACGAAGCACTTTCATTAGAGCCCAAATA
TCAACCGAACTTATTTTTACCTCAGCAATCAAATGTGAGTGTTCATTTTGAAATGCAATT
ACTGTCGTTGCACTGCACGTGATCTTGAAAGAATGACAGAAATTATTCACAATAAATTGG
GAGTTCAAATGAATTCAGCACCTATCACTGGTTTGACCTTCATTCGACTCTTTTACTACA
TCTTCCGTTTGACCGCCATCGAATTGGACCTTCAAAATTTTTATGATTCCTCAATTGTCT
TATCTGATCTCGAACAAAGAATGGAAATTTTGGCATGTGATGCAAATTGTTCCAGCATTC
GTCCATCTGAATTAGCTCTCGTTGCAATTTGTACTCAAATGGATGCTTGCATCAGTCAAC
TTGAAGCAGGATCACATCAAATTCATGGTTTGGTTGATTATGCCATTCAATTGCAAAAAT
TATGCAGAATTCCTGACTCGTCATTCTTTCACACTCATGAATCAGTCGTAAGAATTCTCT
CCAACTACAATGGTCAACAAAAAATGCCCTATCGTCAACGTCTTGTATGGAAATTAAGTT
CTAGAACATTGAGATCATTGAGGCCGACAGATAAATTGAAAGTCTCCTCATATTTGCCAA
CTATTGAAGAAGACAATAATTCACAACTTCGTTATAGAACAGGAAGTGTTTCATCAGAAG
ATGGCTCAGAAGAAGATTGGCCAACATCACCAATTGTCGCCGTTTGTGAAGAATGCTAA
>g8670.t18 Gene=g8670 Length=208
MTEIIHNKLGVQMNSAPITGLTFIRLFYYIFRLTAIELDLQNFYDSSIVLSDLEQRMEIL
ACDANCSSIRPSELALVAICTQMDACISQLEAGSHQIHGLVDYAIQLQKLCRIPDSSFFH
THESVVRILSNYNGQQKMPYRQRLVWKLSSRTLRSLRPTDKLKVSSYLPTIEEDNNSQLR
YRTGSVSSEDGSEEDWPTSPIVAVCEEC
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value |
|---|---|---|---|---|---|---|
| g8670.t18 | PANTHER | PTHR10177 | CYCLINS | 1 | 171 | 0 |
| g8670.t18 | PANTHER | PTHR10177:SF473 | CYCLIN G | 1 | 171 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0051726 | regulation of cell cycle | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
