Gene loci information

Transcript annotation

  • This transcript has been annotated as Cyclin G.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g8670 g8670.t22 TSS g8670.t22 32171909 32171909
chr_2 g8670 g8670.t22 isoform g8670.t22 32171987 32177168
chr_2 g8670 g8670.t22 exon g8670.t22.exon1 32171987 32172000
chr_2 g8670 g8670.t22 exon g8670.t22.exon2 32173919 32174200
chr_2 g8670 g8670.t22 exon g8670.t22.exon3 32174264 32174485
chr_2 g8670 g8670.t22 exon g8670.t22.exon4 32174618 32174860
chr_2 g8670 g8670.t22 cds g8670.t22.CDS1 32174747 32174860
chr_2 g8670 g8670.t22 exon g8670.t22.exon5 32175085 32175450
chr_2 g8670 g8670.t22 cds g8670.t22.CDS2 32175085 32175450
chr_2 g8670 g8670.t22 exon g8670.t22.exon6 32175512 32177168
chr_2 g8670 g8670.t22 cds g8670.t22.CDS3 32175512 32175802
chr_2 g8670 g8670.t22 TTS g8670.t22 32178022 32178022

Sequences

>g8670.t22 Gene=g8670 Length=2784
CAAGGAAGCACCGGGTCCTGAAATTGGCCAGCCGCCCTTATCAAATCAACGTGTCATGTC
GGTTCGCTATTCTGCGGATTCTACTATTGTCGCTGTCTCATCTACATCAACCGACTTTAG
TGCGATGAACAATAATAATAATGACATCATCGCCTCGTCTGGCCAAGCTTATCATCAAAT
GAATAGTATGAGCAGTAACAACATAGGAGGAAAGACTCAAGCGGTGATCGATAACGGAAT
AAGCCAAAAACAACATCAACAACAGGGCAGGCCAAAAATGGAAGGAACTCCGGATGCTAA
AAATGCATCATGTATGAGTTCTAATTTTAACATCTCTACCAACATAAACAATAACAATAT
TCAAGAACAACAACAACAACATAGCAATTCCAACAACATGGCTCATCATCATCTTTTAAA
TGCTAGTGCTCAAGACTTATTTTCACAATTACACGAAGCACTTTCATTAGAGCCCAAATA
TCAACCGAACTTATTTTTACCTCAGCAATCAAATGTGAGATGGTGAAATAACAATCGGTA
CAAGAGACGGTGCTGCACATGTATTAAGATGCCTGAAAGTCTGGTATGATTTGCCAAATG
ATGTCCTTTTTAATGCAGTTAATGCAGTTGATCGATTTTTAACCAAAATGAAAGTACGAC
CAAAACATATGGCTTGCATTTCTGTTGGATCTTTGCATTTGGCTATCAAACAATTGGGAC
TTGAAGGCATTGATACAGAAGATTTAGTTGCGATTTCTCAATGTCGTTGCACTGCACGTG
ATCTTGAAAGAATGACAGAAATTATTCACAATAAATTGGGAGTTCAAATGAATTCAGCAC
CTATCACTGGTTTGACCTTCATTCGACTCTTTTACTACATCTTCCGTTTGACCGCCATCG
AATTGGACCTTCAAAATTTTTATGATTCCTCAATTGTCTTATCTGATCTCGAACAAAGAA
TGGAAATTTTGGCATGTGATGCAAATTGTTCCAGCATTCGTCCATCTGAATTAGCTCTCG
TTGCAATTTGTACTCAAATGGATGCTTGCATCAGTCAACTTGAAGCAGGATCACATCAAA
TTCATGGTTTGGTTGATTATGCCATTCAATTGCAAAAATTATGCAGAATTCCTGACTCGT
CATTCTTTCACACTCATGAATCAGTCGTAAGAATTCTCTCCAACTACAATGGTCAACAAA
AAATGCCCTATCGTCAACGTCTTGTATGGAAATTAAGTTCTAGAACATTGAGATCATTGA
GGCCGACAGATAAATTGAAAGTCTCCTCATATTTGCCAACTATTGAAGAAGACAATAATT
CACAACTTCGTTATAGAACAGGAAGTGTTTCATCAGAAGATGGCTCAGAAGAAGATTGGC
CAACATCACCAATTGTCGCCGTTTGTGAAGAATGCTAATTCATCATCATCATCAATGTTA
CATTTTGTCCACGTCCACAAAAAAAACTCTGTGTCTGTCTTAAAATCATCTACATTTTGA
CGGGAAAGAAATGCAAAAACCGTAAGCATTCTTTTGACAATTTTCGGTTGTAACAATGGA
TATCGTCTTCATTAATTTATCTTTAAAATTTAATATTTCTTTAGAAATTTTTCTTTCTTT
CTTAACTTTTCTAAAAACTGCTCCCTCCTTTAAGTTCATTTTTTAATTTTCATAGAAGAG
AGAAAAATACTTTAAGGATAAAAATATAAACATGTAAAAAATGATCAGCTTATAAAAATG
CGACTTGAACATTAAATTGTAAGAGATGCAATTTTAGGGTCTGTGACTTTAAACATGAAA
AAAATGATTCAAAAAAAGATTAAAAATCCTTTCAAAAAATCTAGTTCTAAAAAAATTAAA
AATAATTATAAAAAAAGAAAAGAAAAAAGTACAAAAGTGAAAAAAATTTTCAATGAAAAA
TCATAACTTTAGTCACGTAAGCCTGAATAATGAGATAAAGAGAGAAAGAGGAATTATGCA
TGTTTAAATGAGAAAATCATTGCACGTTAACAAAATATAATCGCATATATAGTTGACTTC
TTTTCCATGTATGTGAAAAAGTTTAAAAGTCATTTATTAGCACCTGCATACTTTTTTTTA
TTATTTGAAAAAATTAATTTTGAAAGGCAAAAAAAAATCTCATAACAAATATGTCTATAT
CTAAATCATTAAATTTTTTTCAACCGTCAATATTTTGTCACTTTTTCTTCATATTTTTCT
AATTTATAACATTGAGCCAGTAACACAATACAATAAAAAGTAACTAATGATTGAAGATAA
TATAAGTAAATGGAAATAATAGAACATGTTATCATTTGATTTGACTAACACAGAGCTCAA
ATAGATAGTTTGTGAATTAGCAACAAATGAGAAAAAGTCTCTTATGGTTACATATTCTAT
TATTTTTTAAATAAAAATAATTAAATCAATCAAGAAACCCACATATTAAAAAAAATATAA
AATAAAACTCTGTATTCGATTTAAGCAAAGTAGCAAGGAAAATTTTTGAGGCGAGCGTTA
TCAGTTCTCATACTTATGGTTTTTTGGTACGTTCATAAATATATTTTTAACCGTTACTTT
TGATGACAGTGAGGGCACGAATAGAAATCATCGATGACTTTTGATAACGTGAATTTTTTT
GTAAACATTCCGCGTAACATAACGACTTTTGACGTGAATATTTTTACCAGCAAAAAGTTA
CTGATAATAAATGAGAAAGAAATTGCTAGAAAATTTTCTTTGCTACTCAAACAACAATTT
TTTGAGATGAAAAAAAATCCTGTA

>g8670.t22 Gene=g8670 Length=256
MKVRPKHMACISVGSLHLAIKQLGLEGIDTEDLVAISQCRCTARDLERMTEIIHNKLGVQ
MNSAPITGLTFIRLFYYIFRLTAIELDLQNFYDSSIVLSDLEQRMEILACDANCSSIRPS
ELALVAICTQMDACISQLEAGSHQIHGLVDYAIQLQKLCRIPDSSFFHTHESVVRILSNY
NGQQKMPYRQRLVWKLSSRTLRSLRPTDKLKVSSYLPTIEEDNNSQLRYRTGSVSSEDGS
EEDWPTSPIVAVCEEC

Protein features from InterProScan

Transcript Database ID Name Start End E.value
4 g8670.t22 Gene3D G3DSA:1.10.472.10 - 1 62 1.2E-9
5 g8670.t22 Gene3D G3DSA:1.10.472.10 - 63 137 1.2E-9
1 g8670.t22 PANTHER PTHR10177 CYCLINS 1 219 4.6E-72
2 g8670.t22 PANTHER PTHR10177:SF473 CYCLIN G 1 219 4.6E-72
7 g8670.t22 Phobius SIGNAL_PEPTIDE Signal peptide region 1 24 -
8 g8670.t22 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide. 1 8 -
9 g8670.t22 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide. 9 20 -
10 g8670.t22 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide. 21 24 -
6 g8670.t22 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 25 256 -
3 g8670.t22 SUPERFAMILY SSF47954 Cyclin-like 2 62 8.84E-7

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0051726 regulation of cell cycle BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values