General information for g8670.t28
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Cyclin G.
Parent gene
- The parent gene g8670 is located on chr_2: 32175512..32177168 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8670 | g8670.t28 | isoform | g8670.t28 | 32173989 | 32176258 |
| chr_2 | g8670 | g8670.t28 | exon | g8670.t28.exon1 | 32173989 | 32174200 |
| chr_2 | g8670 | g8670.t28 | exon | g8670.t28.exon2 | 32174264 | 32174433 |
| chr_2 | g8670 | g8670.t28 | exon | g8670.t28.exon3 | 32174679 | 32174860 |
| chr_2 | g8670 | g8670.t28 | cds | g8670.t28.CDS1 | 32174747 | 32174860 |
| chr_2 | g8670 | g8670.t28 | exon | g8670.t28.exon4 | 32175085 | 32175450 |
| chr_2 | g8670 | g8670.t28 | cds | g8670.t28.CDS2 | 32175085 | 32175450 |
| chr_2 | g8670 | g8670.t28 | exon | g8670.t28.exon5 | 32175512 | 32176258 |
| chr_2 | g8670 | g8670.t28 | cds | g8670.t28.CDS3 | 32175512 | 32175802 |
| chr_2 | g8670 | g8670.t28 | TTS | g8670.t28 | 32176243 | 32176243 |
| chr_2 | g8670 | g8670.t28 | TSS | g8670.t28 | NA | NA |
Sequences
>g8670.t28 Gene=g8670 Length=1677
TATTGTCGCTGTCTCATCTACATCAACCGACTTTAGTGCGATGAACAATAATAATAATGA
CATCATCGCCTCGTCTGGCCAAGCTTATCATCAAATGAATAGTATGAGCAGTAACAACAT
AGGAGGAAAGACTCAAGCGGTGATCGATAACGGAATAAGCCAAAAACAACATCAACAACA
GGGCAGGCCAAAAATGGAAGGAACTCCGGATGCTAAAAATGCATCATGTATGAGTTCTAA
TTTTAACATCTCTACCAACATAAACAATAACAATATTCAAGAACAACAACAACAACATAG
CAATTCCAACAACATGGCTCATCATCATCTTTTAAATGCTAGTGCTCAAGACTTATTTTC
ACAATTACACGAAGCACTTTCATCTGGTATGATTTGCCAAATGATGTCCTTTTTAATGCA
GTTAATGCAGTTGATCGATTTTTAACCAAAATGAAAGTACGACCAAAACATATGGCTTGC
ATTTCTGTTGGATCTTTGCATTTGGCTATCAAACAATTGGGACTTGAAGGCATTGATACA
GAAGATTTAGTTGCGATTTCTCAATGTCGTTGCACTGCACGTGATCTTGAAAGAATGACA
GAAATTATTCACAATAAATTGGGAGTTCAAATGAATTCAGCACCTATCACTGGTTTGACC
TTCATTCGACTCTTTTACTACATCTTCCGTTTGACCGCCATCGAATTGGACCTTCAAAAT
TTTTATGATTCCTCAATTGTCTTATCTGATCTCGAACAAAGAATGGAAATTTTGGCATGT
GATGCAAATTGTTCCAGCATTCGTCCATCTGAATTAGCTCTCGTTGCAATTTGTACTCAA
ATGGATGCTTGCATCAGTCAACTTGAAGCAGGATCACATCAAATTCATGGTTTGGTTGAT
TATGCCATTCAATTGCAAAAATTATGCAGAATTCCTGACTCGTCATTCTTTCACACTCAT
GAATCAGTCGTAAGAATTCTCTCCAACTACAATGGTCAACAAAAAATGCCCTATCGTCAA
CGTCTTGTATGGAAATTAAGTTCTAGAACATTGAGATCATTGAGGCCGACAGATAAATTG
AAAGTCTCCTCATATTTGCCAACTATTGAAGAAGACAATAATTCACAACTTCGTTATAGA
ACAGGAAGTGTTTCATCAGAAGATGGCTCAGAAGAAGATTGGCCAACATCACCAATTGTC
GCCGTTTGTGAAGAATGCTAATTCATCATCATCATCAATGTTACATTTTGTCCACGTCCA
CAAAAAAAACTCTGTGTCTGTCTTAAAATCATCTACATTTTGACGGGAAAGAAATGCAAA
AACCGTAAGCATTCTTTTGACAATTTTCGGTTGTAACAATGGATATCGTCTTCATTAATT
TATCTTTAAAATTTAATATTTCTTTAGAAATTTTTCTTTCTTTCTTAACTTTTCTAAAAA
CTGCTCCCTCCTTTAAGTTCATTTTTTAATTTTCATAGAAGAGAGAAAAATACTTTAAGG
ATAAAAATATAAACATGTAAAAAATGATCAGCTTATAAAAATGCGACTTGAACATTAAAT
TGTAAGAGATGCAATTTTAGGGTCTGTGACTTTAAACATGAAAAAAATGATTCAAAAAAA
GATTAAAAATCCTTTCAAAAAATCTAGTTCTAAAAAAATTAAAAATAATTATAAAAA
>g8670.t28 Gene=g8670 Length=256
MKVRPKHMACISVGSLHLAIKQLGLEGIDTEDLVAISQCRCTARDLERMTEIIHNKLGVQ
MNSAPITGLTFIRLFYYIFRLTAIELDLQNFYDSSIVLSDLEQRMEILACDANCSSIRPS
ELALVAICTQMDACISQLEAGSHQIHGLVDYAIQLQKLCRIPDSSFFHTHESVVRILSNY
NGQQKMPYRQRLVWKLSSRTLRSLRPTDKLKVSSYLPTIEEDNNSQLRYRTGSVSSEDGS
EEDWPTSPIVAVCEEC
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 1 | g8670.t28 | PANTHER | PTHR10177 | CYCLINS | 1 | 219 | 4.6E-72 |
| 2 | g8670.t28 | PANTHER | PTHR10177:SF473 | CYCLIN G | 1 | 219 | 4.6E-72 |
| 5 | g8670.t28 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 24 | - |
| 6 | g8670.t28 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 8 | - |
| 7 | g8670.t28 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 9 | 20 | - |
| 8 | g8670.t28 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 21 | 24 | - |
| 4 | g8670.t28 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 25 | 256 | - |
| 3 | g8670.t28 | SUPERFAMILY | SSF47954 | Cyclin-like | 2 | 62 | 8.84E-7 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0051726 | regulation of cell cycle | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed