General information for g8670.t29
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Cyclin G.
Parent gene
- The parent gene g8670 is located on chr_2: 32175512..32177168 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8670 | g8670.t29 | isoform | g8670.t29 | 32174302 | 32176258 |
| chr_2 | g8670 | g8670.t29 | exon | g8670.t29.exon1 | 32174302 | 32174481 |
| chr_2 | g8670 | g8670.t29 | cds | g8670.t29.CDS1 | 32174365 | 32174481 |
| chr_2 | g8670 | g8670.t29 | exon | g8670.t29.exon2 | 32174618 | 32174860 |
| chr_2 | g8670 | g8670.t29 | cds | g8670.t29.CDS2 | 32174618 | 32174860 |
| chr_2 | g8670 | g8670.t29 | exon | g8670.t29.exon3 | 32175085 | 32175450 |
| chr_2 | g8670 | g8670.t29 | cds | g8670.t29.CDS3 | 32175085 | 32175450 |
| chr_2 | g8670 | g8670.t29 | exon | g8670.t29.exon4 | 32175512 | 32176258 |
| chr_2 | g8670 | g8670.t29 | cds | g8670.t29.CDS4 | 32175512 | 32175802 |
| chr_2 | g8670 | g8670.t29 | TTS | g8670.t29 | 32176243 | 32176243 |
| chr_2 | g8670 | g8670.t29 | TSS | g8670.t29 | NA | NA |
Sequences
>g8670.t29 Gene=g8670 Length=1536
TCTACCAACATAAACAATAACAATATTCAAGAACAACAACAACAACATAGCAATTCCAAC
AACATGGCTCATCATCATCTTTTAAATGCTAGTGCTCAAGACTTATTTTCACAATTACAC
GAAGCACTTTCATTAGAGCCCAAATATCAACCGAACTTATTTTTACCTCAGCAATCAAAT
GATGGTGAAATAACAATCGGTACAAGAGACGGTGCTGCACATGTATTAAGATGCCTGAAA
GTCTGGTATGATTTGCCAAATGATGTCCTTTTTAATGCAGTTAATGCAGTTGATCGATTT
TTAACCAAAATGAAAGTACGACCAAAACATATGGCTTGCATTTCTGTTGGATCTTTGCAT
TTGGCTATCAAACAATTGGGACTTGAAGGCATTGATACAGAAGATTTAGTTGCGATTTCT
CAATGTCGTTGCACTGCACGTGATCTTGAAAGAATGACAGAAATTATTCACAATAAATTG
GGAGTTCAAATGAATTCAGCACCTATCACTGGTTTGACCTTCATTCGACTCTTTTACTAC
ATCTTCCGTTTGACCGCCATCGAATTGGACCTTCAAAATTTTTATGATTCCTCAATTGTC
TTATCTGATCTCGAACAAAGAATGGAAATTTTGGCATGTGATGCAAATTGTTCCAGCATT
CGTCCATCTGAATTAGCTCTCGTTGCAATTTGTACTCAAATGGATGCTTGCATCAGTCAA
CTTGAAGCAGGATCACATCAAATTCATGGTTTGGTTGATTATGCCATTCAATTGCAAAAA
TTATGCAGAATTCCTGACTCGTCATTCTTTCACACTCATGAATCAGTCGTAAGAATTCTC
TCCAACTACAATGGTCAACAAAAAATGCCCTATCGTCAACGTCTTGTATGGAAATTAAGT
TCTAGAACATTGAGATCATTGAGGCCGACAGATAAATTGAAAGTCTCCTCATATTTGCCA
ACTATTGAAGAAGACAATAATTCACAACTTCGTTATAGAACAGGAAGTGTTTCATCAGAA
GATGGCTCAGAAGAAGATTGGCCAACATCACCAATTGTCGCCGTTTGTGAAGAATGCTAA
TTCATCATCATCATCAATGTTACATTTTGTCCACGTCCACAAAAAAAACTCTGTGTCTGT
CTTAAAATCATCTACATTTTGACGGGAAAGAAATGCAAAAACCGTAAGCATTCTTTTGAC
AATTTTCGGTTGTAACAATGGATATCGTCTTCATTAATTTATCTTTAAAATTTAATATTT
CTTTAGAAATTTTTCTTTCTTTCTTAACTTTTCTAAAAACTGCTCCCTCCTTTAAGTTCA
TTTTTTAATTTTCATAGAAGAGAGAAAAATACTTTAAGGATAAAAATATAAACATGTAAA
AAATGATCAGCTTATAAAAATGCGACTTGAACATTAAATTGTAAGAGATGCAATTTTAGG
GTCTGTGACTTTAAACATGAAAAAAATGATTCAAAAAAAGATTAAAAATCCTTTCAAAAA
ATCTAGTTCTAAAAAAATTAAAAATAATTATAAAAA
>g8670.t29 Gene=g8670 Length=338
MAHHHLLNASAQDLFSQLHEALSLEPKYQPNLFLPQQSNDGEITIGTRDGAAHVLRCLKV
WYDLPNDVLFNAVNAVDRFLTKMKVRPKHMACISVGSLHLAIKQLGLEGIDTEDLVAISQ
CRCTARDLERMTEIIHNKLGVQMNSAPITGLTFIRLFYYIFRLTAIELDLQNFYDSSIVL
SDLEQRMEILACDANCSSIRPSELALVAICTQMDACISQLEAGSHQIHGLVDYAIQLQKL
CRIPDSSFFHTHESVVRILSNYNGQQKMPYRQRLVWKLSSRTLRSLRPTDKLKVSSYLPT
IEEDNNSQLRYRTGSVSSEDGSEEDWPTSPIVAVCEEC
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g8670.t29 | CDD | cd00043 | CYCLIN | 62 | 136 | 8.0e-07 |
| 7 | g8670.t29 | Gene3D | G3DSA:1.10.472.10 | - | 18 | 233 | 0.0e+00 |
| 6 | g8670.t29 | Gene3D | G3DSA:1.10.472.10 | - | 31 | 146 | 0.0e+00 |
| 2 | g8670.t29 | PANTHER | PTHR10177 | CYCLINS | 4 | 301 | 0.0e+00 |
| 3 | g8670.t29 | PANTHER | PTHR10177:SF473 | CYCLIN G | 4 | 301 | 0.0e+00 |
| 1 | g8670.t29 | Pfam | PF00134 | Cyclin, N-terminal domain | 27 | 143 | 0.0e+00 |
| 5 | g8670.t29 | SMART | SM00385 | cyclin_7 | 53 | 137 | 4.5e-05 |
| 4 | g8670.t29 | SUPERFAMILY | SSF47954 | Cyclin-like | 19 | 144 | 0.0e+00 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0051726 | regulation of cell cycle | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
