Gene loci information

Transcript annotation

  • This transcript has been annotated as Cyclin G.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g8670 g8670.t7 TSS g8670.t7 32171909 32171909
chr_2 g8670 g8670.t7 isoform g8670.t7 32171978 32175436
chr_2 g8670 g8670.t7 exon g8670.t7.exon1 32171978 32172004
chr_2 g8670 g8670.t7 exon g8670.t7.exon2 32173919 32174200
chr_2 g8670 g8670.t7 cds g8670.t7.CDS1 32173960 32174200
chr_2 g8670 g8670.t7 exon g8670.t7.exon3 32174264 32174481
chr_2 g8670 g8670.t7 cds g8670.t7.CDS2 32174264 32174481
chr_2 g8670 g8670.t7 exon g8670.t7.exon4 32174618 32174860
chr_2 g8670 g8670.t7 cds g8670.t7.CDS3 32174618 32174860
chr_2 g8670 g8670.t7 exon g8670.t7.exon5 32175085 32175436
chr_2 g8670 g8670.t7 cds g8670.t7.CDS4 32175085 32175435
chr_2 g8670 g8670.t7 TTS g8670.t7 32176243 32176243

Sequences

>g8670.t7 Gene=g8670 Length=1122
AATTCCAAGCAAGGAAGCACCGGGTATGTCCTGAAATTGGCCAGCCGCCCTTATCAAATC
AACGTGTCATGTCGGTTCGCTATTCTGCGGATTCTACTATTGTCGCTGTCTCATCTACAT
CAACCGACTTTAGTGCGATGAACAATAATAATAATGACATCATCGCCTCGTCTGGCCAAG
CTTATCATCAAATGAATAGTATGAGCAGTAACAACATAGGAGGAAAGACTCAAGCGGTGA
TCGATAACGGAATAAGCCAAAAACAACATCAACAACAGGGCAGGCCAAAAATGGAAGGAA
CTCCGGATGCTAAAAATGCATCATGTATGAGTTCTAATTTTAACATCTCTACCAACATAA
ACAATAACAATATTCAAGAACAACAACAACAACATAGCAATTCCAACAACATGGCTCATC
ATCATCTTTTAAATGCTAGTGCTCAAGACTTATTTTCACAATTACACGAAGCACTTTCAT
TAGAGCCCAAATATCAACCGAACTTATTTTTACCTCAGCAATCAAATGATGGTGAAATAA
CAATCGGTACAAGAGACGGTGCTGCACATGTATTAAGATGCCTGAAAGTCTGGTATGATT
TGCCAAATGATGTCCTTTTTAATGCAGTTAATGCAGTTGATCGATTTTTAACCAAAATGA
AAGTACGACCAAAACATATGGCTTGCATTTCTGTTGGATCTTTGCATTTGGCTATCAAAC
AATTGGGACTTGAAGGCATTGATACAGAAGATTTAGTTGCGATTTCTCAATGTCGTTGCA
CTGCACGTGATCTTGAAAGAATGACAGAAATTATTCACAATAAATTGGGAGTTCAAATGA
ATTCAGCACCTATCACTGGTTTGACCTTCATTCGACTCTTTTACTACATCTTCCGTTTGA
CCGCCATCGAATTGGACCTTCAAAATTTTTATGATTCCTCAATTGTCTTATCTGATCTCG
AACAAAGAATGGAAATTTTGGCATGTGATGCAAATTGTTCCAGCATTCGTCCATCTGAAT
TAGCTCTCGTTGCAATTTGTACTCAAATGGATGCTTGCATCAGTCAACTTGAAGCAGGAT
CACATCAAATTCATGGTTTGGTTGATTATGCCATTCAATTGC

>g8670.t7 Gene=g8670 Length=351
MSVRYSADSTIVAVSSTSTDFSAMNNNNNDIIASSGQAYHQMNSMSSNNIGGKTQAVIDN
GISQKQHQQQGRPKMEGTPDAKNASCMSSNFNISTNINNNNIQEQQQQHSNSNNMAHHHL
LNASAQDLFSQLHEALSLEPKYQPNLFLPQQSNDGEITIGTRDGAAHVLRCLKVWYDLPN
DVLFNAVNAVDRFLTKMKVRPKHMACISVGSLHLAIKQLGLEGIDTEDLVAISQCRCTAR
DLERMTEIIHNKLGVQMNSAPITGLTFIRLFYYIFRLTAIELDLQNFYDSSIVLSDLEQR
MEILACDANCSSIRPSELALVAICTQMDACISQLEAGSHQIHGLVDYAIQL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
8 g8670.t7 CDD cd00043 CYCLIN 176 250 2.10684E-7
7 g8670.t7 Coils Coil Coil 344 351 -
5 g8670.t7 Gene3D G3DSA:1.10.472.10 - 132 344 2.1E-19
6 g8670.t7 Gene3D G3DSA:1.10.472.10 - 145 260 2.1E-19
10 g8670.t7 MobiDBLite mobidb-lite consensus disorder prediction 62 82 -
2 g8670.t7 PANTHER PTHR10177 CYCLINS 103 330 2.1E-91
3 g8670.t7 PANTHER PTHR10177:SF473 CYCLIN G 103 330 2.1E-91
1 g8670.t7 Pfam PF00134 Cyclin, N-terminal domain 140 257 3.9E-11
9 g8670.t7 SMART SM00385 cyclin_7 167 251 4.5E-5
4 g8670.t7 SUPERFAMILY SSF47954 Cyclin-like 133 258 6.12E-21

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0051726 regulation of cell cycle BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed