General information for g8673.t5
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g8673 is located on chr_2: 32188481..32190037 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8673 | g8673.t5 | isoform | g8673.t5 | 32188134 | 32189176 |
| chr_2 | g8673 | g8673.t5 | exon | g8673.t5.exon1 | 32188134 | 32189176 |
| chr_2 | g8673 | g8673.t5 | cds | g8673.t5.CDS1 | 32188254 | 32188604 |
| chr_2 | g8673 | g8673.t5 | TSS | g8673.t5 | NA | NA |
| chr_2 | g8673 | g8673.t5 | TTS | g8673.t5 | NA | NA |
Sequences
>g8673.t5 Gene=g8673 Length=1043
GGTAAGAAATTTTATACATAAAAGTTTTTTTTAAATAATAAACATTTTTATCTTTTTCTA
TATAGAACATTTCCATCGGTTATTCCAAATCTTCACGATATTACTGATAATCGTGTCATA
ATGGTAAATTTCCGTGATCCAAAATATCCGCGTGATTTTATTTTCCCTGCACGTGTTTTG
CCCAATGCCAAGCAACCGCCAAATGTTTTAAAACAAGGTGTCGACGAAGGCAATCCAAAT
TATAGACCTATAATTGGATTTAATCACAATCGATCGCAATTCGCTAGTGTTGGTGCAGCT
GGACAAAGAACAGTAAATCATTACACATCAAATCGATATTATGAAAGTGGAAATAATGGT
GAGTATTTATTTCATAATCATTTATTTTTATACAAAGCCAAGTTTTTTGCCTCCACTAGT
CACAATGTCAGTTGCCTTTTTAGCAAGTGGAAGTTTTTGAACATTTTCTGATAAAAATTC
ACACGATATTTTTTGTGTTGCTTCAAATGGCACACCAAACATTGAAAGTTGACAAAATCT
AAAATTTGTATCAAAATTCAATTTATCAGATACTCGTATGAATGATGTCGATTCAGCTCG
AAATGTCTGCAAAATTTGTTCATTAAGGGATAGTTGAGAGTGTGTCGAGTTCAAATAAGC
GAATTGTAATATGAGTTTAATGAAATTCTTTCTTGCGTCTTTATCGCGTTGTGTTTTTAA
TTCTGTTCCGTTGATGGGATTTCCATAAATGTCGCAGACATCAAATAGAAATGAAAGTTC
ATCACCATGAGCAACAAATCCTTTTGATTTCTTTTTTCCTACTAAGGGAAGAAGTTTTAG
AAATGTTCTACCTCCAATCGATGCATCAGCAATGTGTTCAAATTGATAAAAGTATGCGTT
AGAAAATTTACTCCAAAGATTTGCAGTTAAAGTTGATGGAATATTGAAAAATATATCAGT
TGTTGTTTCAATCAATTTGAGTAAAATTTTATCAGGTGATAAATTGTCAGGAATTGTAAG
ATAATCTTTTAATGATGGAAGTT
>g8673.t5 Gene=g8673 Length=116
MVNFRDPKYPRDFIFPARVLPNAKQPPNVLKQGVDEGNPNYRPIIGFNHNRSQFASVGAA
GQRTVNHYTSNRYYESGNNGEYLFHNHLFLYKAKFFASTSHNVSCLFSKWKFLNIF
Protein features from InterProScan
No InterPro annotations for this transcript.
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
