Gene loci information

Transcript annotation

  • This transcript has been annotated as Glutaryl-CoA dehydrogenase, mitochondrial.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g8687 g8687.t4 TSS g8687.t4 32249942 32249942
chr_2 g8687 g8687.t4 isoform g8687.t4 32250287 32251461
chr_2 g8687 g8687.t4 exon g8687.t4.exon1 32250287 32251461
chr_2 g8687 g8687.t4 cds g8687.t4.CDS1 32250448 32251461
chr_2 g8687 g8687.t4 TTS g8687.t4 32251519 32251519

Sequences

>g8687.t4 Gene=g8687 Length=1175
CTGATTTTAATTGGGAAGATGCATTAAATTTAAATTCATTATTAACTGATGAAGAAAAAG
CTGTAAGAGATTCATTTAATCAATACTGCCAATCACAATTACTGCCAAGAGTTACAAAAG
CAAATCGAGATGAATTTTTTGATCGTGAAATTTACAAAGAAATGGGACAATACGGCGCAC
TAGGATGCACAATTAAAGGCTATGATTGTGCGGGAGTTTCAAATGTTGCTTATGGATTAA
TGGCACGTGAAGTTGAAAGAGTTGATTCAGCATACCGCAGTGCATTTTCAGTTCAAAGTA
GTTTGGCAATGGGTGCAATTTACATGTATGGAAATGAAGCACAAAAGCAAAAGTTTTTAC
CAAAAATGGCTAAGGGTGAATTAGTTGGATGTTTTGGATTAACAGAACCAAATCATGGCT
CAGATATTGGTACAATGGAGACAAAAGCAAAATTTGATTCAAAAACAAAAACGTTTGTGC
TATCTGGCAGTAAAACTTGGATTACAAACAGTCCAATTGCTGACATTCTCATAATTTGGG
CAAGATTTGAAGATGGAAAAGTTCGTGGATTTATTGTTGAAAGATCTGAAAGTTCACAAG
GCTTAGCAACACCAAAAATTGAAGGAAAATTTTCACTTCGAGCATCAGAAACTGGAATGA
TTTTAATGGATGATGTGAGAGTTCCTGAAGAAAATCTTTTACCAAATGCTGTTGGAATGA
GTGGGCCTTTTGGATGTTTAAATAATGCTCGTTATGGAATTGCATGGGGTGCATTAGGAG
CAGCTGAAGCTTGTCTTCATATCGCTAGGCAATATACTTTAGATCGAAAACAATTTAAAA
GACCACTTGCAAATACACAATTAATTCAAAAGAAATTTGCCGACGCTTTGACAGAAATTA
ATTTGGGTTTAATGGCAGCATATCAAGTTGGTCGATTGAAGGACAAAAATCTTCATTGTC
CAGATATGATTTCAATGATAAAAAGAAATAATGCAGGAAAATCTTTGGAAATTGCTCGAC
AAATGCGAGATGTTTTGGGTGGAAATGGAATTGCTGATGAATATCATATTATAAGACATG
TGATGAATCTTGAAGCTGTTAATACATATGAAGGTACTCATGATATTCATGCATTAATCT
TAGGTAAAGCAATTACTGGACTTGCTGCATTTTAA

>g8687.t4 Gene=g8687 Length=337
MGQYGALGCTIKGYDCAGVSNVAYGLMAREVERVDSAYRSAFSVQSSLAMGAIYMYGNEA
QKQKFLPKMAKGELVGCFGLTEPNHGSDIGTMETKAKFDSKTKTFVLSGSKTWITNSPIA
DILIIWARFEDGKVRGFIVERSESSQGLATPKIEGKFSLRASETGMILMDDVRVPEENLL
PNAVGMSGPFGCLNNARYGIAWGALGAAEACLHIARQYTLDRKQFKRPLANTQLIQKKFA
DALTEINLGLMAAYQVGRLKDKNLHCPDMISMIKRNNAGKSLEIARQMRDVLGGNGIADE
YHIIRHVMNLEAVNTYEGTHDIHALILGKAITGLAAF

Protein features from InterProScan

Transcript Database ID Name Start End E.value
8 g8687.t4 Gene3D G3DSA:1.10.540.10 - 1 74 3.6E-19
9 g8687.t4 Gene3D G3DSA:2.40.110.10 - 76 184 6.5E-33
10 g8687.t4 Gene3D G3DSA:1.20.140.10 - 186 337 1.8E-40
4 g8687.t4 PANTHER PTHR42807 GLUTARYL-COA DEHYDROGENASE, MITOCHONDRIAL 1 337 1.5E-186
3 g8687.t4 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 1 73 4.8E-16
1 g8687.t4 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 77 172 7.3E-20
2 g8687.t4 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 191 331 2.7E-27
7 g8687.t4 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 290 309 -
5 g8687.t4 SUPERFAMILY SSF56645 Acyl-CoA dehydrogenase NM domain-like 1 182 1.44E-56
6 g8687.t4 SUPERFAMILY SSF47203 Acyl-CoA dehydrogenase C-terminal domain-like 190 334 1.35E-39

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors MF
GO:0050660 flavin adenine dinucleotide binding MF
GO:0003995 acyl-CoA dehydrogenase activity MF
GO:0055114 NA NA

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values