Gene loci information

Transcript annotation

  • This transcript has been annotated as Talin-1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g8688 g8688.t2 isoform g8688.t2 32275542 32290511
chr_2 g8688 g8688.t2 exon g8688.t2.exon1 32275542 32275680
chr_2 g8688 g8688.t2 cds g8688.t2.CDS1 32275542 32275680
chr_2 g8688 g8688.t2 exon g8688.t2.exon2 32275746 32276424
chr_2 g8688 g8688.t2 cds g8688.t2.CDS2 32275746 32276424
chr_2 g8688 g8688.t2 exon g8688.t2.exon3 32276495 32276998
chr_2 g8688 g8688.t2 cds g8688.t2.CDS3 32276495 32276998
chr_2 g8688 g8688.t2 exon g8688.t2.exon4 32277059 32277147
chr_2 g8688 g8688.t2 cds g8688.t2.CDS4 32277059 32277147
chr_2 g8688 g8688.t2 exon g8688.t2.exon5 32277536 32277624
chr_2 g8688 g8688.t2 cds g8688.t2.CDS5 32277536 32277624
chr_2 g8688 g8688.t2 exon g8688.t2.exon6 32277933 32278596
chr_2 g8688 g8688.t2 cds g8688.t2.CDS6 32277933 32278596
chr_2 g8688 g8688.t2 exon g8688.t2.exon7 32279325 32283362
chr_2 g8688 g8688.t2 cds g8688.t2.CDS7 32279325 32283362
chr_2 g8688 g8688.t2 exon g8688.t2.exon8 32283426 32283616
chr_2 g8688 g8688.t2 cds g8688.t2.CDS8 32283426 32283616
chr_2 g8688 g8688.t2 exon g8688.t2.exon9 32286007 32286645
chr_2 g8688 g8688.t2 cds g8688.t2.CDS9 32286007 32286645
chr_2 g8688 g8688.t2 exon g8688.t2.exon10 32287012 32288150
chr_2 g8688 g8688.t2 cds g8688.t2.CDS10 32287012 32288150
chr_2 g8688 g8688.t2 exon g8688.t2.exon11 32288343 32288526
chr_2 g8688 g8688.t2 cds g8688.t2.CDS11 32288343 32288526
chr_2 g8688 g8688.t2 exon g8688.t2.exon12 32290183 32290188
chr_2 g8688 g8688.t2 cds g8688.t2.CDS12 32290183 32290188
chr_2 g8688 g8688.t2 exon g8688.t2.exon13 32290251 32290511
chr_2 g8688 g8688.t2 cds g8688.t2.CDS13 32290251 32290511
chr_2 g8688 g8688.t2 TTS g8688.t2 32290853 32290853
chr_2 g8688 g8688.t2 TSS g8688.t2 NA NA

Sequences

>g8688.t2 Gene=g8688 Length=8622
ATGGCCGCACAACTTTCATTGCGGATCAGTTTGGAAGGTGGAAGAGTCACAAAAACCATA
CAATTCGATCCAAACACAACAGTATTTGATGCATGCCGCATTATTCGAGATAAATTTGCT
GAAGCAGTTCAAGGACAATCAACCGAATATGGACTGTTCTTGTCAGACGAGGACAGCCGT
CAAGGAGTATGGCTAGAGCCAGGCAGAAATCTTGGTTATTATCTTCTGCGCAATTTAGAT
GTTTTGGAATATCGACGAAAATTGCGAACATTGCGAGTAAGAATGCTCGATGGTGCCGTT
AAGACGATACTAGTCGACGACTCACAGCCCGTCTCACAATTGATGGTTGTCATTTGCACA
AAAATTGGCATCACAAATCACGAAGAGTACGGTCTAGTGCGCGAGGAACAAGAGTCACAA
AATGAAAATCAGCCAGATAATAAATCGAATTTTGGGACATTAACGTTGCGACGAAAATTG
ACTGGCGAACGTGACCGTGATGCTAAAATGGAGAGCTTGAGAAAAAAATTGAAAACTGAT
GACGAAATCAATTGGGTTGATATAAGTAAAACTCTTCGTGAACAAGGAATCGATGAAAGC
GAGACAGTTTTGTTGCGTCGAAAATATTTCTTCTCCGATCAAAATATCGATTCGACTGAT
CCAGTACAACTGAATTTGTTATACGTTCAAGCACGTGATGCCATTTTAAATGGAACACAT
CCAATCACACAAGAAAAAGCTTGCGAATTTGCTGGCATTCAAAGTCATATTCAATTTGGT
GATTTTATTGATTCAAAACATAAAGCAGGATTCTTAGACTTGAAAGAGTTTTTACCTAGT
TCATATGTGCGTGTAAAGGGCATTGAGAAAAAGATTTTTGCTGAACATCGCAAACACATT
GGAGTCAGTGAACTTGATGCTAAAGTTTTATACACAAAAACAGCACGCGAATTGCCAACT
TATGGTGTAACATTTTTCCTCGTAAAAGAGAAGATGCATGGCAAGAATAAACTTGTACCA
CGCTTGCTTGGTGTCACAAAAGATTCTGTATTACGTCTTGATGAGAAAACAAAAGAAATT
TTGAAAACGTGGCCATTGACAACAGTTCGTCGCTGGGGCGCATCACCAAATACTTTCACT
CTCGATTTTGGGGACTATGCCGACCAATATTATTCGGTTCAGACGACAGAAGCTGAACAA
ATTGTTCAATTGATTGCTGGCTACATTGACATTATTTTGAAGAAAAAGCAGAGCAAAGAC
CATTTTGGAATAGAAGGTGATGAAGGATCGACAATGGTTGAAGAAAGTGTTGCACCTTTC
AAAGCATCAATTATTCAACAAGAAGTCACAAAAGTGGGAAAAGTTAATGAAGAATCAGTT
TATAAGCCTGTATTAATTCGTGGAACTGATGGTTCAAGAACATTTCAAACTGGCGAAATG
AATTCCGCCCAATTTGGTGCTATTGTTGGGCAAGTCAATTTAGCTCATCAGCCACCAATG
CTTCAACAGACGCATGTCAGTACAATTTTATCAGAACCACAGCGTGCATTACTCGGTTAC
ATTTCGGCTGGTCAAGAAGCAATTGTTAAAGCTGAACGTGATCTTGAGACAAAGGCAGCA
CTTCCACCATTAGGAAATGATCCAGGTTCATTGCAATGGCGTGAGGAAACACTCGAAACA
TCGAAACAAACTGTCACAAGTCATTTATCAAATATGAATGCCGCAACTGCACAAGTCGTG
ACTGCAGCAAATGCCGAAGATGTCGACCATGTTGCTGTCGGTGCAGCAGTTTCACAAATT
GCACAATCAATTCCGGAAGTGACAAAGGAAGTTCGTCTTATTGCAGCCTTGATGGAAGAC
GATCATAGTGGTGATAAGTTGCTTGAAGCTACAAGAAAATTATGTAATGCATTTAGTGAC
TTGTTGAAAGCTGCTGAACCTGAAGCTAAAGATCCACGCCAAAATCTTTTCAATGCTGCT
AGTCGTGTTGGTGAAGCTACAGGGCAAGTTTTATCAACAATTGGTGAAGAAGATGATTCA
AGTAGAGAGCTTCATGATATGTTATTGGCTTTAGCTAAAGCTGTTGCTAATACAACTGCT
GCATTGGTGCTAAAAGCTAAATCTATTGCTTCTGAATGTGAAGATGATGCTACAAGAAAT
AAAGTTATTGGAGCTGCTAGTCAATGTGCACTCGCAACAAGTCAATTAGTTGCATGTGCA
CGAGTTGTTGCACCAACAATTCAATCACCAGCATGTCGTGAACAACTTGAAGCTGCAGCA
CGTGAAGTTGCAAAAGCTGTGACCACTTTAGTTGAAGTTTGTAATGAAGCATCAGATAAT
CATGAACTTAAAGGAGATTTAATGGCTGCTGCCAAAGAAGTTTCAAGATCATTGACAGAT
TTGCTTGAGCATATTAAAATTTGTTCACGTGAACGTGCTGTAAGAATTCAAGAAGAAAAT
CCAGTTGAAAATGTTATTGTTGCCACTGACATTCTTGTATCATCATCTGATCCACAAGAA
ATGATTCGTCAAGCAAAAGCACTTGGACAAGCAACAGCAGAACTTATAAAATCAATCAAA
GGTGAAGCTGAACGTCATGAAGATTCAGAAATTCAAAGACGTCTTTTAGCTGCTGCAAAA
CAACTTGCTGATGCAACAGCAAAAATGGTTGAAGCTGCTCGTCTTTGTGCCAGTTCACCA
CATGAATCAACACACCAAGAAGCATTGCGTCATGCAGCAGAAGAATTACGTGAAATTACA
ACGACAACAGCAAATACGCCAGCAATGAAGAGAAAAGTTATTCAACGATTAGAACAATGT
GCAAAACAAGCAGCATCATCAGCAACTCAATGCATAAGTGCAGCACAAAATGCAACAACT
TATAGTGAAGATATTCAAACAAAAGAAGTTTTAATTCAAGATTGTCAAGCTGTTGCCGAA
CAAATTCCACGATTAGTTTCTGGTGTTAAAAATACTTTGGCACATCCTGATGATTCATCA
GCTCATCTTGGTTTAATTGAAGCAAGTGAACAATTTTTAGAGCCAGGAACACAAGTTGCA
GCATCAGCTAGAAATCTTCAACCGAGTGTTCGTGACCATGTTGCTGCACAACAATTAAGC
AAATCATCAATCACTTTGACACATTCAATTCATGAATTGAGATCAGCAGCACAACGTGCA
CGAGAAGCATGCGGTGGAAATGAACTTGAATCAGCACTTGATGCAGTTAAGAATTTAAGA
AATGTTTTGGCTGACACAAAGCGTGCAGCAAAAGACGGATCATTGAGACCATTGCCTGGT
GAGACAGAAGATGGTTCATTTAAACAATTAGGAACCACAAGTAATGGAGTTGATGTTGCA
ATGGTTCAATTATTGTCAGCTGTTACACAAGGCAATAATTCTTATGCAGGCGTTGCTGGT
CGTGATACTGCATTAGCTTTGGGTGAATTTACAAAATCAGTTCGTGGTGTTGCAGCAACA
AATAAAAATCCAATGGTCATTGATTGTGCTGATGAAGTCATCATTGAATCAATAAGATTA
ATTGAAGAAGCACAAAGAACACTTCAAAATATTGGAAATCAAGAAAATTTGTATACGAGT
GCAAAACGAGTTAAAGGTGCACTTGCAAGAACACAAGATTGTCTTCCAGGTTTAAAAGAT
ATCAATGAAGCTTATGAAACTATCACTGAACTTAGACAAATTCTTGATGTTGGTGAATAT
CCGCCTTCATCAAGACCATTCGGTCATTTACAAAATGATTTAAAAACAGCTGCAAATAAT
TTGAGTACATCTGGTGGTCGTATAGCTCAATCTTATGCAAGTCCAATTCAATTGGCTCAT
ACAAGTCAAGATTTCTGTAGTTCATATAAAGAACTTTTAACAATCGCTTTAGAATTGGCT
GGTCAAACACAAGAAGAACATACAAGAACAATTATTGTTGATTCACTTCGTGGAATTACA
AATCAAAGTACAAGTTTATTGGGAATTTCAAGAAATGTTGCAACTGATCCAGCATATCCA
AATGCTAAAAATGAACTTGCTTCAGCATCACGTCTTGTCACTGAAAGTATCAATAAACTT
GTTGATGTTTGTACACAATCAGCACCAGGACAGAAAGAATGTGACAATGCAATTCGATCA
ATTGAAGCACTTCGACCATTGCTGGAATCACCACAAGAAGCATTGACAGATCAAGGATAT
TATGATTGCTTAGAAACAGTCATGGATAAAAGTAGAACCCTTGGTGATGGTATGACTGGA
ATTGCAAATAATGCCAAGCATTCGCAACATGTTGAATTTGGTCATGCTGTTAATTCCGTC
TCTGAATCAATTCGTGGTTTAATTGAATCAGCTGCACAAGCCGCTTATTTAGTTGGTGTT
TCGAATCCAACAAGTGCTGCCGGTCGTCCGGGTTTAGTCGATTCTTCAGCTTTTGCACGA
GCATCACAGGCAATTCGCCAGAGTTGCGATGTATTAAAAGGACCAACAAGCACACAACAA
CAAGTTTTATCAGCAGCAACTGTCATTGCAAAACATACATCAGCATTATGTAATGCCTGT
CGCAATGCAAGTTCAAACACACAAAATCCTGTTGCCAAGAGACATTTTGTTCAAGCAGCT
AAAGATGTTGCTAATTCGACTGCATCACTCGTGCGTGAAATTAAGGCTCTTGATCAAGAT
TATAGTCCAGCATCGCGAATGAGATGTTCAAAGGCAACTGAGCCACTTTTAGATGCTGTT
CAATCGCTTTGTCAATTTGCATCATCACCAGAATTTGTTTCAATCCCAGCAAAAATTTCA
GCCGATGGACGACGTGCACAAGAACCAATTTTACATGCAGGACGTGGAATTTTAGATGGT
GCTGTAGAAATGGTAAAAACTGCCAAAGTGCTTGCTGTTACACCCACAGATCCACCAATT
TGGCAACAACTCGCAATTCATAGCAAGTCAGTGTCAGAGTCAATTAAAAAACTCGCTTCA
AGTATTCGTGAAAAGGCTCCCGGTCAGTTACAATGTGAATCAGTGATTGAATGCTTAAAC
ACCTGCGCTCGCGATCTCAATTCAACATCGATGGCTATTGGCATTGAAGGTTTACAACCG
AAAAAGGATAATAATTTGCAAGGTTATACTGGACAGGTGTTGAATGCTGCAAGCGAATTA
ATTGACAAACTTGAGCCAGTAAAATCTTCTGCGAAAAAGAATGCCGAATCATTGGGCCAT
GCTGTGACACAGATCTCGAGACATATTGTGCCATTGACAGCTGGTACAATTGGCGCATGC
TCGCATGTTATTCATTCGGGTCAACAAACTATTCTCATTGACCAAGCAAAATCAATTGTT
GAAAGTTCCATTCAATTAGTGCAAGTCGCTAAAGAAGCTGGTGGAAATCCACGTGCATCA
CATTTGCATCAAGAACTTGATGAATGTGTCGAATCAACACGAGAAGCAATTTTAGAACTT
AATGCAACCGTTGAACGACTTTCAACTGAAAATGGAGTTGTGACTGGTCTTATTGAGCAA
ATTTCACGGTCCATTTCGCGAATTACTGACAAACGCCAGTCATTGTTAGGAACTTCATTA
AATGATACATATGTTGACTATCAGACACGAATGGTTCAATCAGCAAAAGAAATTGCACGT
CATGCTAATGAAATAAGCACAAAAGCTGCTTTTGATCCAACCAAGTTGGCACCGCTTTGT
GTTGAAATGACTCGTCATTATACGCAACTTGCTCAAGATTCTGTTGGAGCTTCGTCATTA
ACAACTTCACCTGATGTTTCCATTCGTATTAAAAACACTGTACAAGATTTGGGTAGATCG
ATTACTCATTTAATTCAATCAACAACTGGTGTAAGAAAGGATGATGCCAGTAGTTTGCAT
GAAACACAAAAAAGTTCTCGCGATGTTTGTGAGAAAGTTTCACAAGTTTTGGCTGCCTTA
CAAGCTGGCTCACGTGGAACACAAGCATGTATTAATGCAGCAAGTACAGTTGCTGGAATT
ATTAGCGATTTGGACACAACAATCATGTTTGCTGCTGCTGGAACTCTTCATAAAGACAAT
GAAGGTCAATTTTCAGACCATCGTGAGCACATTTTGAAGACTGCAAAAGCTCTCGTTGAA
GATACAAAAGTTTTAGTCGCTGGTGCTGCTGGCACTCAAGATCAACTTGCAGGTGCTGCA
CAAAATGCTGTTTCAACTATTGTTCAACTTGCTGAAGCTGTCAAACGCGGTGCAAGTTCT
CTTGGTTCACAACAATCTGATTCACAAGTTATGGTCATGAATGCTGTCAAAGATGTTGCT
GCAGCACTTGGTGAGCTTATTAATGCTACAAAATTGGCATCTGGTAAACCAATTCATGAT
CCTGCAATGAATGACTTAAAAGAAAGTGCAAAGGTAATGGTCATGAATGTGACATCACTT
CTTAAAACTGTGAAAGCTGTTGAAGATGAAAATACGCGTGGCACACGTGCGATGGAGGCA
ACGATTGAAGCAATCACACAAGAAATTCGTGCTATGCAATATTCTGAAAATAATCGAACA
TCAGCAATGCCATCGACACCAGAAGATTTAATTCGTGTGACTAAAAATGTGACTGTAGCA
ACTGCCAAAGCTGTCTCGGCTGGTTCGAGCAATTCACAAGCTGACATTACTGCCGCTGCC
AATATTGGTCGTCGTGCAATTTCTGATATGTTGACTGTTTGTAAATCTGTTGCATGGAAT
TGTGCAGAAACAGCTGACTTAAGGCAAAGAACACTCGATGCAGGCACAGCTGTTGCTGAA
TCATATCGATCACTTCTTGAAGGAGTTTTAAGAAATTGTTCAGCTGATGAAAGAATGCAA
TATTCAAGACGTGTAGCAAAATGTGTAACTGATTTAGTAAGCATGGCTCAATTATTAAAA
GGAAGTGATTGGGTTGATCCAGAAGATCCCACTGTTATTGCTGAAAATGAATTACTTGGA
GCTGCCGCTTCAATTGATGCTGCTGCAAAGAAACTTGCAAGTTTAAGACCAAGAAGACAA
CCAGACGTTAAACAAACAGATGAAAACATGAACTTTGATGAGATGATTCTTGAAGCAGCA
AAAGGAATTATGGCTGCATCAAGTGCTCTTGTTCGTGCTGCAAATGCAGCTCAACGTGAG
CTCATTGATCAAGGAAAAGTCGCAAAACGTCCATTAACTTCATCGGATGATGGACAATGG
TCAGAAGGTCTCATTTCAGCTGCTCGTCTTGTTGCTGCTGCAACACATAGCTTAGTCGAA
GCCGCTCAGAATTTAGTTCAAGGAACTGGCACAGAAGAAATGTTAATTTCAACAGCCAAG
CAAGTTGCAAGTTCAACTGCGCAATTATTGATTGCCTGCAAAGTGAAATCAGATCCAAAT
TCAGAAAGTGGTCGAAGATTGCAAGCTGCCGGAAATGCTGTAATTAAATCAACTGACAAT
CTTGTTCGTGCTGCACAGCAAGCAATTGAAGGAGAGGAAGAACACACATTGAAACTCAAT
CGTAATATGGTTGATGGTATGGCACAGGAAATAAATGCAAGATCCGAAGTATTAAAAATG
GAACGACAATTGGAAGAAGCAAGAAATAAATTGACAGCAATCAGACATGCAAAATATAGA
CAGCGAACAGCTGCAGGCTATACAACTGATGAGAGTGATTTCGAAGGTGGAAATACAAGT
GCTTCCGGTTACTATCAGCAAGGATTTGCTTCACCTTCGCCCACACATATGATGAATCGA
TCCGCAAATGCCACATCTCCGTCGCCTAGCAGCTTCCATAATCAATCTTCATCTACTACC
TACGAACAACAAACGCACATTACACAACAACAACAGCAACAGAAAAAGCCAAGCTTATTA
ACAGCTAATGCGATACCAAAACCTTACAATTCTTCAATTTTGTCTTCCGGCACACCATCA
CCTCAACCACCTCAACCAATGTCACCAATTCAAAATCGCACTTATGAAACTACAACAATT
AATAATCCAAATTTAAGTTCGCGATTTGATAAGACACGATTTGACCACGCAATTCAGGAT
TTGCATGATAAAACTTTCGGAAAAAATTCGCCAGTTCAAACAATGAGCACATTTAAATCA
TCAATTACAACCAATAGCAATAACTTACCAAATGATCCAGCCAAACAAAATTATGAAGGA
TACACGACGAGTAGATATGAGACGAGAACGTTCCAAACAACCGATGGTCAACCAATAAGC
AATCTTAATCAAGAATTTTCACGCATGAATATTGTTAATCAATCAAATGGTGGTGTTAAT
GGTCAGAACGCATCGACACTTCACTCGACAAGCTCTTCACAGTCATCGCACCAAAAAATC
ATTCAAACTATGGAATTTAAGATGTGCCAAGAAATGTCACAATCAGAGAAGAATTCAGAT
GATCTTTCGCAAATTAGAAATTCACAAGAATTGAGAGCGAATTTATTGAATATCTCAAAT
ATTCTTAACACTGGATTATCAGCAGAAACTCTGGAAATTTGTATACAACTTTGTGAAGCT
GGTGTTCATCCTCAAGCTCTTGCCAATATTATTCAACAGATAAGAAGAGAAGTTACTCAA
ATACAGAGCAATCAAAATGGCTCAAATAAAACTCACGAATAA

>g8688.t2 Gene=g8688 Length=2873
MAAQLSLRISLEGGRVTKTIQFDPNTTVFDACRIIRDKFAEAVQGQSTEYGLFLSDEDSR
QGVWLEPGRNLGYYLLRNLDVLEYRRKLRTLRVRMLDGAVKTILVDDSQPVSQLMVVICT
KIGITNHEEYGLVREEQESQNENQPDNKSNFGTLTLRRKLTGERDRDAKMESLRKKLKTD
DEINWVDISKTLREQGIDESETVLLRRKYFFSDQNIDSTDPVQLNLLYVQARDAILNGTH
PITQEKACEFAGIQSHIQFGDFIDSKHKAGFLDLKEFLPSSYVRVKGIEKKIFAEHRKHI
GVSELDAKVLYTKTARELPTYGVTFFLVKEKMHGKNKLVPRLLGVTKDSVLRLDEKTKEI
LKTWPLTTVRRWGASPNTFTLDFGDYADQYYSVQTTEAEQIVQLIAGYIDIILKKKQSKD
HFGIEGDEGSTMVEESVAPFKASIIQQEVTKVGKVNEESVYKPVLIRGTDGSRTFQTGEM
NSAQFGAIVGQVNLAHQPPMLQQTHVSTILSEPQRALLGYISAGQEAIVKAERDLETKAA
LPPLGNDPGSLQWREETLETSKQTVTSHLSNMNAATAQVVTAANAEDVDHVAVGAAVSQI
AQSIPEVTKEVRLIAALMEDDHSGDKLLEATRKLCNAFSDLLKAAEPEAKDPRQNLFNAA
SRVGEATGQVLSTIGEEDDSSRELHDMLLALAKAVANTTAALVLKAKSIASECEDDATRN
KVIGAASQCALATSQLVACARVVAPTIQSPACREQLEAAAREVAKAVTTLVEVCNEASDN
HELKGDLMAAAKEVSRSLTDLLEHIKICSRERAVRIQEENPVENVIVATDILVSSSDPQE
MIRQAKALGQATAELIKSIKGEAERHEDSEIQRRLLAAAKQLADATAKMVEAARLCASSP
HESTHQEALRHAAEELREITTTTANTPAMKRKVIQRLEQCAKQAASSATQCISAAQNATT
YSEDIQTKEVLIQDCQAVAEQIPRLVSGVKNTLAHPDDSSAHLGLIEASEQFLEPGTQVA
ASARNLQPSVRDHVAAQQLSKSSITLTHSIHELRSAAQRAREACGGNELESALDAVKNLR
NVLADTKRAAKDGSLRPLPGETEDGSFKQLGTTSNGVDVAMVQLLSAVTQGNNSYAGVAG
RDTALALGEFTKSVRGVAATNKNPMVIDCADEVIIESIRLIEEAQRTLQNIGNQENLYTS
AKRVKGALARTQDCLPGLKDINEAYETITELRQILDVGEYPPSSRPFGHLQNDLKTAANN
LSTSGGRIAQSYASPIQLAHTSQDFCSSYKELLTIALELAGQTQEEHTRTIIVDSLRGIT
NQSTSLLGISRNVATDPAYPNAKNELASASRLVTESINKLVDVCTQSAPGQKECDNAIRS
IEALRPLLESPQEALTDQGYYDCLETVMDKSRTLGDGMTGIANNAKHSQHVEFGHAVNSV
SESIRGLIESAAQAAYLVGVSNPTSAAGRPGLVDSSAFARASQAIRQSCDVLKGPTSTQQ
QVLSAATVIAKHTSALCNACRNASSNTQNPVAKRHFVQAAKDVANSTASLVREIKALDQD
YSPASRMRCSKATEPLLDAVQSLCQFASSPEFVSIPAKISADGRRAQEPILHAGRGILDG
AVEMVKTAKVLAVTPTDPPIWQQLAIHSKSVSESIKKLASSIREKAPGQLQCESVIECLN
TCARDLNSTSMAIGIEGLQPKKDNNLQGYTGQVLNAASELIDKLEPVKSSAKKNAESLGH
AVTQISRHIVPLTAGTIGACSHVIHSGQQTILIDQAKSIVESSIQLVQVAKEAGGNPRAS
HLHQELDECVESTREAILELNATVERLSTENGVVTGLIEQISRSISRITDKRQSLLGTSL
NDTYVDYQTRMVQSAKEIARHANEISTKAAFDPTKLAPLCVEMTRHYTQLAQDSVGASSL
TTSPDVSIRIKNTVQDLGRSITHLIQSTTGVRKDDASSLHETQKSSRDVCEKVSQVLAAL
QAGSRGTQACINAASTVAGIISDLDTTIMFAAAGTLHKDNEGQFSDHREHILKTAKALVE
DTKVLVAGAAGTQDQLAGAAQNAVSTIVQLAEAVKRGASSLGSQQSDSQVMVMNAVKDVA
AALGELINATKLASGKPIHDPAMNDLKESAKVMVMNVTSLLKTVKAVEDENTRGTRAMEA
TIEAITQEIRAMQYSENNRTSAMPSTPEDLIRVTKNVTVATAKAVSAGSSNSQADITAAA
NIGRRAISDMLTVCKSVAWNCAETADLRQRTLDAGTAVAESYRSLLEGVLRNCSADERMQ
YSRRVAKCVTDLVSMAQLLKGSDWVDPEDPTVIAENELLGAAASIDAAAKKLASLRPRRQ
PDVKQTDENMNFDEMILEAAKGIMAASSALVRAANAAQRELIDQGKVAKRPLTSSDDGQW
SEGLISAARLVAAATHSLVEAAQNLVQGTGTEEMLISTAKQVASSTAQLLIACKVKSDPN
SESGRRLQAAGNAVIKSTDNLVRAAQQAIEGEEEHTLKLNRNMVDGMAQEINARSEVLKM
ERQLEEARNKLTAIRHAKYRQRTAAGYTTDESDFEGGNTSASGYYQQGFASPSPTHMMNR
SANATSPSPSSFHNQSSSTTYEQQTHITQQQQQQKKPSLLTANAIPKPYNSSILSSGTPS
PQPPQPMSPIQNRTYETTTINNPNLSSRFDKTRFDHAIQDLHDKTFGKNSPVQTMSTFKS
SITTNSNNLPNDPAKQNYEGYTTSRYETRTFQTTDGQPISNLNQEFSRMNIVNQSNGGVN
GQNASTLHSTSSSQSSHQKIIQTMEFKMCQEMSQSEKNSDDLSQIRNSQELRANLLNISN
ILNTGLSAETLEICIQLCEAGVHPQALANIIQQIRREVTQIQSNQNGSNKTHE

Protein features from InterProScan

Transcript Database ID Name Start End E.value
46 g8688.t2 CDD cd17089 FERM_F0_TLN 5 88 5.62997E-40
45 g8688.t2 CDD cd17090 FERM_F1_TLN 89 209 5.88792E-55
43 g8688.t2 CDD cd14473 FERM_B-lobe 223 318 2.33429E-24
47 g8688.t2 CDD cd10569 FERM_C_Talin 322 413 1.77758E-57
44 g8688.t2 CDD cd12150 talin-RS 1665 1836 1.74306E-66
39 g8688.t2 Coils Coil Coil 1069 1089 -
42 g8688.t2 Coils Coil Coil 1810 1830 -
40 g8688.t2 Coils Coil Coil 2510 2537 -
41 g8688.t2 Coils Coil Coil 2869 2873 -
22 g8688.t2 Gene3D G3DSA:3.10.20.90 - 2 83 2.5E-28
23 g8688.t2 Gene3D G3DSA:3.10.20.90 - 84 212 1.0E-47
38 g8688.t2 Gene3D G3DSA:1.20.80.10 - 213 320 1.1E-40
32 g8688.t2 Gene3D G3DSA:2.30.29.30 - 321 418 5.9E-37
25 g8688.t2 Gene3D G3DSA:1.20.1420.10 A middle domain of Talin 1 504 674 2.4E-65
24 g8688.t2 Gene3D G3DSA:1.20.1440.10 de novo design (two linked rop proteins) 681 808 9.5E-48
37 g8688.t2 Gene3D G3DSA:1.20.120.230 - 811 930 4.3E-35
36 g8688.t2 Gene3D G3DSA:1.20.120.230 - 931 1061 2.2E-40
29 g8688.t2 Gene3D G3DSA:1.20.1420.10 A middle domain of Talin 1 1062 1218 5.7E-37
31 g8688.t2 Gene3D G3DSA:1.20.1420.10 A middle domain of Talin 1 1219 1368 1.8E-38
27 g8688.t2 Gene3D G3DSA:1.20.1420.10 A middle domain of Talin 1 1369 1667 1.6E-128
35 g8688.t2 Gene3D G3DSA:1.20.120.230 - 1468 1597 1.6E-128
30 g8688.t2 Gene3D G3DSA:1.20.1420.10 A middle domain of Talin 1 1668 1834 2.8E-51
34 g8688.t2 Gene3D G3DSA:1.20.120.230 - 1861 1983 1.4E-38
26 g8688.t2 Gene3D G3DSA:1.20.1420.10 A middle domain of Talin 1 1984 2152 7.6E-78
28 g8688.t2 Gene3D G3DSA:1.20.1420.10 A middle domain of Talin 1 2153 2302 8.8E-53
33 g8688.t2 Gene3D G3DSA:1.20.1410.10 I/LWEQ domain 2304 2493 4.6E-75
51 g8688.t2 MobiDBLite mobidb-lite consensus disorder prediction 135 156 -
52 g8688.t2 MobiDBLite mobidb-lite consensus disorder prediction 2580 2617 -
8 g8688.t2 PANTHER PTHR19981 TALIN 3 2540 0.0
9 g8688.t2 PANTHER PTHR19981:SF1 RHEA, ISOFORM B 3 2540 0.0
7 g8688.t2 Pfam PF16511 N-terminal or F0 domain of Talin-head FERM 5 86 6.3E-32
3 g8688.t2 Pfam PF00373 FERM central domain 219 326 2.1E-20
1 g8688.t2 Pfam PF02174 PTB domain (IRS-1 type) 342 410 1.4E-5
5 g8688.t2 Pfam PF09141 Talin, middle domain 513 671 1.4E-60
2 g8688.t2 Pfam PF08913 Vinculin Binding Site 1863 1985 5.3E-50
6 g8688.t2 Pfam PF01608 I/LWEQ domain 2396 2540 1.1E-48
4 g8688.t2 Pfam PF12554 Mitotic-spindle organizing gamma-tubulin ring associated 2809 2855 7.3E-20
53 g8688.t2 ProSiteProfiles PS50057 FERM domain profile. 89 416 55.583
54 g8688.t2 ProSiteProfiles PS50945 I/LWEQ domain profile. 2302 2542 55.202
50 g8688.t2 SMART SM00295 B41_5 85 326 9.1E-60
49 g8688.t2 SMART SM01244 IRS_2 321 414 9.3E-20
48 g8688.t2 SMART SM00307 ILWEQ_1 2347 2542 3.0E-66
21 g8688.t2 SUPERFAMILY SSF47031 Second domain of FERM 207 321 4.58E-29
11 g8688.t2 SUPERFAMILY SSF50729 PH domain-like 322 412 1.13E-25
10 g8688.t2 SUPERFAMILY SSF109880 A middle domain of Talin 1 510 672 9.94E-64
18 g8688.t2 SUPERFAMILY SSF109885 I/LWEQ domain 679 802 5.89E-51
20 g8688.t2 SUPERFAMILY SSF109885 I/LWEQ domain 772 907 7.85E-44
19 g8688.t2 SUPERFAMILY SSF109885 I/LWEQ domain 964 1061 9.61E-5
12 g8688.t2 SUPERFAMILY SSF47220 alpha-catenin/vinculin-like 1236 1372 6.2E-27
17 g8688.t2 SUPERFAMILY SSF109885 I/LWEQ domain 1476 1565 1.14E-10
13 g8688.t2 SUPERFAMILY SSF47220 alpha-catenin/vinculin-like 1697 1817 2.67E-5
14 g8688.t2 SUPERFAMILY SSF47220 alpha-catenin/vinculin-like 1859 1985 1.88E-29
15 g8688.t2 SUPERFAMILY SSF47220 alpha-catenin/vinculin-like 2020 2144 2.51E-5
16 g8688.t2 SUPERFAMILY SSF109885 I/LWEQ domain 2304 2494 6.93E-52

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0051015 actin filament binding MF
GO:0005856 cytoskeleton CC
GO:0005925 focal adhesion CC
GO:0005200 structural constituent of cytoskeleton MF
GO:0001726 ruffle CC
GO:0003779 actin binding MF
GO:0007155 cell adhesion BP
GO:0008274 NA NA
GO:0033566 gamma-tubulin complex localization BP

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values