General information for g8692.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Condensin complex subunit 3.
Parent gene
- The parent gene g8692 is located on chr_2: 32294237..32297507 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8692 | g8692.t1 | isoform | g8692.t1 | 32294237 | 32297507 |
| chr_2 | g8692 | g8692.t1 | exon | g8692.t1.exon1 | 32294237 | 32294473 |
| chr_2 | g8692 | g8692.t1 | cds | g8692.t1.CDS1 | 32294237 | 32294473 |
| chr_2 | g8692 | g8692.t1 | exon | g8692.t1.exon2 | 32294541 | 32294732 |
| chr_2 | g8692 | g8692.t1 | cds | g8692.t1.CDS2 | 32294541 | 32294732 |
| chr_2 | g8692 | g8692.t1 | exon | g8692.t1.exon3 | 32294800 | 32295416 |
| chr_2 | g8692 | g8692.t1 | cds | g8692.t1.CDS3 | 32294800 | 32295416 |
| chr_2 | g8692 | g8692.t1 | exon | g8692.t1.exon4 | 32295476 | 32297507 |
| chr_2 | g8692 | g8692.t1 | cds | g8692.t1.CDS4 | 32295476 | 32297507 |
| chr_2 | g8692 | g8692.t1 | TTS | g8692.t1 | 32297667 | 32297667 |
| chr_2 | g8692 | g8692.t1 | TSS | g8692.t1 | NA | NA |
Sequences
>g8692.t1 Gene=g8692 Length=3078
ATGCCTCGTTCGCGTAAAATAGCAATTAAGAAGCATGAAAATGGAAAACTAGAGGAGAAA
GTTATTGAGAAACCGAAAAAAGTCAAGAAAGGCGAAACTCCAGCAAAGAAACAGAAAATT
GAGCCTGATTATATTACTGGTGATGGATTAAATGTTATTAAGGCAATTTTGTCAGTTCAA
AAGACTGATTGTAATAACCAAAAGGCACTTGCTGAGCTTAAGAAACTATATGAAAAGATG
AAACACTCAGATTTTATGAAATCATTCATGACTGCTCTTCAAGTGTTTCTTATTCGAGAC
GATGGTGATGAATATGCTTCTCGAGAACTCAAATTCATGGGTATTTTTGTAGCAGAATAT
GGTGAACTTTTAACTGAATCAGGAGCCACACATCCAATTGTTGAAACATTCTTTAAAGAG
ATTTTAGCAATTACTTCATCTTCAGTACATGTAAGAGTTCGAATTTGTTTATTAGTCACA
AACACAATGGCTTCTTTCTCGCAAAAAGCTGAATTGGATGAATCGATTATTGACAAAATA
ACTGAGCGAATGCTTTATTTTATGAAAGATACTTCTCCATTGGTGCGAGCACAATCAGTT
TTTGCATTACAAAGATTACAAGATCCAGACTCAAGTGAAGATCCCGTGACGAAATCATTT
GTATATCATATGGAATCAGATCCAGCGGTGAAAGTTCGACAAGCAACCATCACAGCAATA
GCCAAAAAACTACAAAATATTCCCGCCATTCTTGATCGACTTCATGATGTTGATGAGAAA
GTTCGTCGTCATACATACTTGCAAATGTCAAGTTATTCAGTGAAAAGTTACAAAATTGCA
GATCGAATTGCTATTCTTAATGCAGGCTTAAACGATCGATCTGAAATTGTGAGAAAAGTT
GTAACAAATTTGCTTCTTTCAAATTGGATTGGTGTTTATGATTTTGATTATGCTGAATTT
ATTCGTGCTATAAAACTTGACTCAAGCGAAAATGAACTAATTAAATTTCGTAAACTTTCT
GAAATGGCTTTGAGAGACATTTTTAAAAGACGAAAATTAAACGATCTAATTTCATATCTC
AATGCAACAGAAAGTAAAGAGTACAAAAATTGTTTGCAATTGGAAAAATCAACATTAGAG
ATGTTGATTGTTTGGAAAATGATCACGAAATGCCATCAGGACTATTTAAATGACAAAACT
AGAAATAGTGATGATATCAAAGATGATATTGGAAGTGACGGTGAAGAAGAATCGAGTCTG
ATTGATCAGAATGTTTTAGATGTTGAAATTTTACCCGAACTATCTGTGTTTTGTAATTAC
ATGGAAAACTTTGTGAATAATTTCAACTTTGGGATTGATTTGGATGAAAAATATCAGAAA
ATATACTTTAGTCAATGTCTCATTTTACTTCTACAAATTGTTCAACTAAATGACATGAGT
GATGAAATTGGAAAAGCACAACTTCAGAAATTGCTTAAGACAATTCTTCTAATGTACGAT
ATTTCTGAATTTGCTATTGAAGAAATTTCTCATGTTATTGAAAAAATAATACCAGTTGTT
GAGCAGCGTCTTTCGTTCTTCAATCAAATTGTGACTGAAATTATAAAACCTGGTGTGCCA
TCAGAATATAGTCGACAAGCGATCATCGATGATCTTATAGATCGATCAGATATCGACAGA
AAAGTGCAAGCAAAAGCAATAAAACTTCATATGATGGACTTGAAAGAGCAGGAAACTCAA
TTTGTAAAACAGAAACAATATGCAGAATGCCAAAAAATTTCTGAAGAATATCAAAAGTTA
AACGAAGAGCTTGTTGAATTACTTAAACCTGTTGCCGAGTTGCATTCGTCAGATTCAACA
CAATCGCTTTTAGACAATTTATCATCTGTTGTCATTTCGAAGAAAATTACGTCTAGTGAT
ATTATCAAAAATTTACGTATATGTTATTATGCTGTCATGACAAAAGGAGTAAAAACAATT
ACGCATGATATACTTCAAATTTACAATGAATTTGTTCGTTTCCATTTGGAATCAACTGAT
TTAACAACACGAATTTGGTCGTTAAAGACATCAACAGCTTATAGCTTATTGTATGAGTCG
GTGGCAAAGGAAATTTATTTGGTCATAAAATCGCAAGTATTCAAAAGCATACACGTTTTA
CTTTGGGAATGTTCTGTTGAATGCATCTTTGATTTACTTTTGCATTATGGTATTGAAAAA
ATGGAAAATGTTGATGATAATAATAATAATGCAAACAATATGATTTTGACGAGTAATTCA
CAAATTAATAGAAGCAAACGTAGTGGTCGAACTTTGTATACAAATATTGAGGATGATGAT
GAACAAGATGAAATAAATATTATCAAAACATTAGACGTTATGCAAATGTTGCAGCATTTA
TTGGATCAAAGTGATGATTTGCGAATAACCAAAGTCTTAATTTGTGGTTTTTGTAAAATG
ATTTTGCATGGTGTTTATTATACTCGTGAGCTTATGTCAAAATTCCTTCTGATGTATTTT
AATCCCGCAATGCCTGCAGAAATAAATCAATTGCTAGGAGTTTTCTTGGAAAATATCTTT
AAAAGAAAGAAGCAAGAATATTTGCATGATGCATTGACTCCAACGATTTTTACATTAGTT
GGAGCGCCTTATGACTCACCATTGCTAGACGTTAAACTTGAAATTGTTCTTAAATATATT
GTGAATGCAACTAGACCAATTTACTGTAGCAATGGACTCAATTTACACAACACTCTTGGT
ATGGAATTTTTGAATGTAATGAAAGAAAATCCAGATAATAGGGAAATTTTAAAAACTTTC
GCTAAAGAACTATCTGAGCTTGAATTAAGTGAAGATCCAATTTTAAAGAGAGACATGACG
AAACAAGTTGAAACAATATTGAGAGAATCATCAGCTGATTTTCGTACAAGGAAATATTTA
ACTGATTTCTGTAAAATATTGAATGGAACATATTGCGCACCATTAACATTCTCAAGTACA
GCAAAAACACCAAGAATTATTGATGAAGAAGAGGATGATCAATTAGAGAGTGTTGAAGAA
AACGAACAAGCACAATAA
>g8692.t1 Gene=g8692 Length=1025
MPRSRKIAIKKHENGKLEEKVIEKPKKVKKGETPAKKQKIEPDYITGDGLNVIKAILSVQ
KTDCNNQKALAELKKLYEKMKHSDFMKSFMTALQVFLIRDDGDEYASRELKFMGIFVAEY
GELLTESGATHPIVETFFKEILAITSSSVHVRVRICLLVTNTMASFSQKAELDESIIDKI
TERMLYFMKDTSPLVRAQSVFALQRLQDPDSSEDPVTKSFVYHMESDPAVKVRQATITAI
AKKLQNIPAILDRLHDVDEKVRRHTYLQMSSYSVKSYKIADRIAILNAGLNDRSEIVRKV
VTNLLLSNWIGVYDFDYAEFIRAIKLDSSENELIKFRKLSEMALRDIFKRRKLNDLISYL
NATESKEYKNCLQLEKSTLEMLIVWKMITKCHQDYLNDKTRNSDDIKDDIGSDGEEESSL
IDQNVLDVEILPELSVFCNYMENFVNNFNFGIDLDEKYQKIYFSQCLILLLQIVQLNDMS
DEIGKAQLQKLLKTILLMYDISEFAIEEISHVIEKIIPVVEQRLSFFNQIVTEIIKPGVP
SEYSRQAIIDDLIDRSDIDRKVQAKAIKLHMMDLKEQETQFVKQKQYAECQKISEEYQKL
NEELVELLKPVAELHSSDSTQSLLDNLSSVVISKKITSSDIIKNLRICYYAVMTKGVKTI
THDILQIYNEFVRFHLESTDLTTRIWSLKTSTAYSLLYESVAKEIYLVIKSQVFKSIHVL
LWECSVECIFDLLLHYGIEKMENVDDNNNNANNMILTSNSQINRSKRSGRTLYTNIEDDD
EQDEINIIKTLDVMQMLQHLLDQSDDLRITKVLICGFCKMILHGVYYTRELMSKFLLMYF
NPAMPAEINQLLGVFLENIFKRKKQEYLHDALTPTIFTLVGAPYDSPLLDVKLEIVLKYI
VNATRPIYCSNGLNLHNTLGMEFLNVMKENPDNREILKTFAKELSELELSEDPILKRDMT
KQVETILRESSADFRTRKYLTDFCKILNGTYCAPLTFSSTAKTPRIIDEEEDDQLESVEE
NEQAQ
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g8692.t1 | Coils | Coil | Coil | 59 | 79 | - |
| 9 | g8692.t1 | Coils | Coil | Coil | 583 | 603 | - |
| 7 | g8692.t1 | Gene3D | G3DSA:1.25.10.10 | - | 157 | 332 | 9.3E-8 |
| 6 | g8692.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1003 | 1025 | - |
| 5 | g8692.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1010 | 1025 | - |
| 2 | g8692.t1 | PANTHER | PTHR14418:SF5 | CONDENSIN COMPLEX SUBUNIT 3 | 52 | 1021 | 1.2E-135 |
| 3 | g8692.t1 | PANTHER | PTHR14418 | CONDENSIN COMPLEX SUBUNIT 3-RELATED | 52 | 1021 | 1.2E-135 |
| 1 | g8692.t1 | Pfam | PF12719 | Nuclear condensing complex subunits, C-term domain | 645 | 949 | 4.5E-39 |
| 4 | g8692.t1 | SUPERFAMILY | SSF48371 | ARM repeat | 70 | 950 | 1.57E-11 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0000796 | condensin complex | CC |
| GO:0007076 | mitotic chromosome condensation | BP |
KEGG
Orthology
- This transcript has been annotated with K06678 (condensin complex subunit 3)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
