Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g8694 g8694.t3 isoform g8694.t3 32304490 32307180
chr_2 g8694 g8694.t3 exon g8694.t3.exon1 32304490 32304495
chr_2 g8694 g8694.t3 cds g8694.t3.CDS1 32304490 32304495
chr_2 g8694 g8694.t3 exon g8694.t3.exon2 32306337 32307114
chr_2 g8694 g8694.t3 cds g8694.t3.CDS2 32306337 32307114
chr_2 g8694 g8694.t3 exon g8694.t3.exon3 32307170 32307180
chr_2 g8694 g8694.t3 cds g8694.t3.CDS3 32307170 32307180
chr_2 g8694 g8694.t3 TSS g8694.t3 32307217 32307217
chr_2 g8694 g8694.t3 TTS g8694.t3 NA NA

Sequences

>g8694.t3 Gene=g8694 Length=795
ATGAAATTGAGTTGTATCATTTTGTTCTACTGGTTGGCAATTCTAAACTCTTCATTAGCT
CTTCATTCTGTGACAATTGAATGTAAATATTATTTGGAAGTTGACTTTGGTTATGAATGC
ATAGTTGATAATCAAGAAGTTTTCACTGGTAATCGTGTGATCATCGAAAATGCTATAGGC
CAACATGAAGATGGAAGAACTAATGACGATGTTGAAAGATTTTACATTACCAATGCTACT
AATTTAAAATATTTTCCAAAGAATATCAACAATATTTTCAAAAAAGGTTTAACTAAAATT
GCTATTCAAAATTCAAATCTCATCGAAATCACAAGTGAAGATTTAAAAGTTTATCCAAAA
CTTAAATTTTTATTATTAAATGGAAATCAACTTAAAGTTATCAGAGAAGACACATTTAAA
TTTAACCCAGCCCTTGAATGGATTGTTATGTTTAGCAATAAAATCAAGCATATTGATCCT
AAATCATTTAGTGCATTGAAAAATCTTGAAATATTAGATATGAGAGCGAATTATTGTAAT
TTTGAATCAGCAGATTATAAAGATGCAGTTTTAGAAATGGTAAAAAAAATCGAAAAAGGT
GCATGTCAATCAAACAAATATAAAACAACAACAACCATGAATCCTTTGATCACAATAAAT
GAAAAATTAGAAGGAAATGATCTTCAAGAAAATATAGCAGAAGTCGATGAATATCGGGAT
TATTTAGACGATTATTATGAAAATTCTAGTAAAAAAATCACAAATAATTTTTTTCTTATC
GCGGTTGCTTTATAA

>g8694.t3 Gene=g8694 Length=264
MKLSCIILFYWLAILNSSLALHSVTIECKYYLEVDFGYECIVDNQEVFTGNRVIIENAIG
QHEDGRTNDDVERFYITNATNLKYFPKNINNIFKKGLTKIAIQNSNLIEITSEDLKVYPK
LKFLLLNGNQLKVIREDTFKFNPALEWIVMFSNKIKHIDPKSFSALKNLEILDMRANYCN
FESADYKDAVLEMVKKIEKGACQSNKYKTTTTMNPLITINEKLEGNDLQENIAEVDEYRD
YLDDYYENSSKKITNNFFLIAVAL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
6 g8694.t3 Gene3D G3DSA:3.80.10.10 Ribonuclease Inhibitor 54 241 1.8E-17
2 g8694.t3 Pfam PF13855 Leucine rich repeat 119 177 1.3E-12
8 g8694.t3 Phobius SIGNAL_PEPTIDE Signal peptide region 1 20 -
9 g8694.t3 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide. 1 2 -
10 g8694.t3 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide. 3 15 -
11 g8694.t3 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide. 16 20 -
7 g8694.t3 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 21 264 -
4 g8694.t3 SUPERFAMILY SSF52058 L domain-like 81 180 3.64E-15
5 g8694.t3 SignalP_EUK SignalP-noTM SignalP-noTM 1 20 -
1 g8694.t3 SignalP_GRAM_NEGATIVE SignalP-noTM SignalP-noTM 1 20 -
3 g8694.t3 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 7 26 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005515 protein binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed