General information for g8714.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Laminin subunit gamma-1.
Parent gene
- The parent gene g8714 is located on chr_2: 32510126..32513754 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8714 | g8714.t1 | isoform | g8714.t1 | 32504968 | 32513754 |
| chr_2 | g8714 | g8714.t1 | exon | g8714.t1.exon1 | 32504968 | 32505179 |
| chr_2 | g8714 | g8714.t1 | cds | g8714.t1.CDS1 | 32504968 | 32505179 |
| chr_2 | g8714 | g8714.t1 | exon | g8714.t1.exon2 | 32505234 | 32505534 |
| chr_2 | g8714 | g8714.t1 | cds | g8714.t1.CDS2 | 32505234 | 32505534 |
| chr_2 | g8714 | g8714.t1 | exon | g8714.t1.exon3 | 32505599 | 32505685 |
| chr_2 | g8714 | g8714.t1 | cds | g8714.t1.CDS3 | 32505599 | 32505685 |
| chr_2 | g8714 | g8714.t1 | exon | g8714.t1.exon4 | 32505744 | 32505993 |
| chr_2 | g8714 | g8714.t1 | cds | g8714.t1.CDS4 | 32505744 | 32505993 |
| chr_2 | g8714 | g8714.t1 | exon | g8714.t1.exon5 | 32506046 | 32506599 |
| chr_2 | g8714 | g8714.t1 | cds | g8714.t1.CDS5 | 32506046 | 32506599 |
| chr_2 | g8714 | g8714.t1 | exon | g8714.t1.exon6 | 32506659 | 32507719 |
| chr_2 | g8714 | g8714.t1 | cds | g8714.t1.CDS6 | 32506659 | 32507719 |
| chr_2 | g8714 | g8714.t1 | exon | g8714.t1.exon7 | 32507828 | 32507958 |
| chr_2 | g8714 | g8714.t1 | cds | g8714.t1.CDS7 | 32507828 | 32507958 |
| chr_2 | g8714 | g8714.t1 | exon | g8714.t1.exon8 | 32508025 | 32509897 |
| chr_2 | g8714 | g8714.t1 | cds | g8714.t1.CDS8 | 32508025 | 32509897 |
| chr_2 | g8714 | g8714.t1 | exon | g8714.t1.exon9 | 32509997 | 32510124 |
| chr_2 | g8714 | g8714.t1 | cds | g8714.t1.CDS9 | 32509997 | 32510124 |
| chr_2 | g8714 | g8714.t1 | exon | g8714.t1.exon10 | 32513036 | 32513172 |
| chr_2 | g8714 | g8714.t1 | cds | g8714.t1.CDS10 | 32513036 | 32513172 |
| chr_2 | g8714 | g8714.t1 | exon | g8714.t1.exon11 | 32513614 | 32513754 |
| chr_2 | g8714 | g8714.t1 | cds | g8714.t1.CDS11 | 32513614 | 32513754 |
| chr_2 | g8714 | g8714.t1 | TSS | g8714.t1 | 32513941 | 32513941 |
| chr_2 | g8714 | g8714.t1 | TTS | g8714.t1 | NA | NA |
Sequences
>g8714.t1 Gene=g8714 Length=4875
ATGTATTTAAGTAATGAATTTAATAGAATCTTGATTGTGTTAACATTGTTAAATTGTGCA
ATTGCATACATATCGGATAGCAACTATGCAACTACACACATATCATCTTCAGAATGTTAT
GATAATTACGGCCAGCCGAGACGGTGCATACCAGAATTTGAGAATGCAGCTTTTAATCTG
CCGGTAGATGCGACAAATACTTGTGGTCAAGAAGAAGATACAGATTTTTGTGTACAGACT
GGATTTTCTAATTTCCCTAAAAGTTGTGACGTTTGTCGTGAGTATGATCACACATCAGTT
TATTTGACTGATTTACACGATCCAAAAAGTCCAACATGGTGGCAGTCAGAGACAATTTAT
GAAGGCATTCAATATCCGACTGCAGTAAATTTGACACTTAATTTAGGAAAATCATTTGAT
ATTACGTATATTCGTATTGTCTTTTACTCGCCAAGACCTGAATCTTTTGCAATTTATAAG
AGAGTTCATCAGGATGGTCCATGGATTCCTTATCAATTTTATAGTGCAACTTGTCGTAGC
ACTTATGGCTTACCAGATTCACTCAACATTCAAAAGGGTGAAAATGAATCTCGTGCATTG
TGTACAAGCGAGTATAGTGACATTTCACCTCTTCAATTTGGTAATATTGCTTTCTCATCA
CTCGAGGGTCGACCAAGTGCATATAATTTCGAGCACAGTATTGAACTGCAACAATGGGTT
ACGGCCACTGACATTCGAATCTCATTGAATCGTTTAAACACATTTGGTGATGAATTGTTT
GGTGATAAACAAGTTTTAAAGTCATATTTCTATGCCATTGCTGATATTGCTGTTGGTGCA
CGTTGTAAATGTAATGGACATGCAAATCGTTGTGTTGAAAGCACAGGACTTTATGGAGAA
CGTAAGAAAGTTTGTGAATGTAAGCATAATACTGATGGACCTGATTGTGAAAAGTGTTTG
CCATTTTATAATGATGCTCCATGGGGAAGAGCTACATCAAAGAATGCACATGAATGTAAG
CAATGCAACTGCAACGGATATTCAAATAAATGTTATTTCGATAGGAATCTTTATAATTTA
ACTGGTCATGGTGGACATTGTATTGATTGTACAGCAAATCGTGATGGACCAAATTGTGAA
AGATGCAAAGAAAACTTTTATATGCGTGATGATGGCTATTGTATTCATTGTGATTGTAAT
CCAATTGGATCACGTTCACTTCAATGTAATTCAGAAGGAAAATGTCAATGTAAGAAAGGA
GTCACAGGAGAAAAATGTGATCGTTGTGAAGCAAATCATTTCAATTTTGGAATTCATGGT
TGTCAATCGTGTGATTGTAATTTAAGTGGTTCTTATGATAATACACCATCATGTGATCCT
GAAACTGGCTTCTGTTCATGTAAGGAAAATGTCGAAGGACGTCACTGTCGTGAATGTAAA
CCAGGATTCTTTAATTTGGATTTTGATAATAAATTTGGTTGCACACCATGCTTCTGTTAT
GGTCACACTTCAGAATGTCACAGTGCATCAGGTTATTCAATTGTTTCACTCACATCAAAT
TTCAATAAAAATAAAGAAAAATGGAGTGCAATTGATGAAAATTCAAAAGCTCTTGATGTC
AAATATAATATTTTAAGACAAAATATTGGAATTCTTAATAGTGACAGCAAAAGTGTCTAT
TTCAATGCACCAGATAGATTTTTGGGTGATCAACGTGCTTCTTACAATCGTTTATTGAAA
TTTAAACTTCAATTGGTCAAACAACGTGGACCAAATCCTTCACCAAATGATATCGTTCTT
GAAGGTGCTGGAATTAAAATTTTCTTGCCAATTTTTGCTCAAGGTCAAGGAATGCCTGAT
GATCAATTAAAAGAATATTCTTTCCGTCTTCATGAACATCCTGATTATTCATGGCAACCA
AGTCAATCATCAAGACAATTTATGTCAATTCTTAGCAATTTAACATCGATTAAAATTCGT
GCAATTTATGCAGATGGTGGTGAAGCTTATCTTGATGATTTTGAATTACAAACAGCACAT
CGTGGGGCTGCAGGAAATCCAGCAAAATGGATTGAACAATGTCAATGTCCAGAAGGCTAT
GTTGGTCAATTTTGTGAATCATGTGCTCCTGGTTATCGACATAGTCCAGCAAATGGTGGT
CCATTTATGCCTTGTATTCCTTGCGATTGTAACAAACATGCTGAAATTTGTGATTCTGAA
ACTGGAAGATGCATTTGTCAACATAATACTGCTGGTGATAATTGTGATCAATGTGCACGT
GGTTATTATGGAAATGCATTGACTGGAACGCCATACGATTGTACAAGATGTCCTTGTCCC
GATAATGGCGCTTGCATGCAATTGCCTGATGAATCAATAATTTGCCTTGAATGTCCTGTT
GGTTATTTCGGTGCACGTTGTGAAATGTGTTCAGATGGATATTATGGCGATCCAACAGGA
GCATCAGGAAAAATTCAACTTTGTCAATTATGTGATTGTAATGGGAATATTGATCCAAAT
GCAGTTGGTAATTGTAACAGAACAACAGGAGAATGTCTCAAGTGTATTCACAACACTGCT
GGACCTCATTGTAATGAATGTTTGCCTGGACATTTTGGTGATCCTTTTGCTATTCCTCAT
GGTTCATGCGAAGCTTGCTCATGTTATCCAAGAGGTTCAGTTCAAGATGAAGATGGAATT
TCAATTTGTAATCCAGTGTCTGGTGATTGTCAATGCAAGCCAAATGTCATTGGTAAAAAC
TGTAATGAATGTCAAAGTGGATTCTGGAATATTGCAAGTGGTGAAGGATGTCAGAGTTGT
AAATGTGATCCAATTGGATCTTACAACAGTTCATGTAACACTTATACAGGACAATGCCAT
TGCAAGCCAGGAGTAACGGGACTTCAATGCGACAAATGTGAGGCTTATCATTATGGTTTT
TCAGCTGAAGGATGTCAAGCTTGTGATTGTGACATTAGTGGATCAAAGAGTGCTCAATGT
GATGAATTTGGTCAATGTCCATGTAATCCAAATGTTGAAGGACGAACTTGTAATCGTTGT
AAAGAGAACAAATATGACAGAAACCAAGGTTGTCTCGATTGTCCTGCTTGCTATAATCTC
GTTCAAGATGCTGCAAATGCTCACAGAGAAGAACTTTATGCATTTAAAAATGTCTTGCAA
GGAATTTCTGAAAATCCAACTGTCATTGAAGATACAGAATTTGAGGCACGATTGAGAGCA
TTAAATGAGAAAGTCAACATTGTTCTTGAAGATGCAAAGGCAGCAAGTGGTGGAAGTGAC
ATTTCATTAACGCAAAAAATGGAAAATTTGAATGAACTTCTTGCTGATATTGAATTAAAT
CTTGATGAAGTACAACTCATGCATAATACTTCAAATGCAAATGTAATTGAGACCGGAAAA
AATGTTGATAAAGTACAGCAAAATATTCAACAAGCTAGTGATGAATTGAATATTGCATTA
GAATTAATTCAAACTGAAGGTTTAGTTGAATTAGAACGTGCCAAAAATCGTTCACTTCAT
ATTGATCATCAAAATGAACAAATGAGTGACATTTCAAGAACTTCACGTAAAATTGCTGAA
GATTTGGAGAAGAATGCTGAAAATAGCAAAAAAATTGCTAAAGAAACAAGAGAGCGTGCC
ACAAATGCATCAGACTTGGCAAAGAACAGCATTGAATTACAACGATCAATTACTGAACAA
CTCAAAACTAAAATTGTTCCTGATTTCTCAAAAGAAAAGAAAAAGATTGAAGCATTAAAG
AAATTGACTTCTGAAGCATTGACAAAATCTGAAAATGTTTATGATGAAGCTTTGACACTC
TTTGCTGATATCAACAATGTTCAAATCGCAGAAGTTAATTTAGAACCAATTAAAGAAAAT
GCAAAGACTTTGAATGAACAAATTAATGAAATTGCAGCCGAACTTGACAAAGCATTAAAT
ACAAATAATGAAATTTTGAGTGATTTAGAAGACAATTTGAGCCTTTCTTTACTTTTAATT
AAACGTGGAGAGGCACAAAAGGAAGATGCAATTGAAACATTGGCACATGTAGTTGACTCT
AAAGAATTAGCAGAAAAAGCAGTTAAAGATGGTGATGACACACTCAAAAAGGCTAACAAC
ACACTTTATTTGTTGCAAAGTTTCTCAACTCAAGTACAAAAGTCATCAGAATCAGCAAAA
ATTGCACTTGATGATGTTGAAAAAATCAAAACACAAATGGAGGAAACTGAAGAGTTAATA
AGAAAAACTGAACAGCTTTTGGAAGAATCATACAATAATGCAGAAAAGGCAAAAATCAAT
GCTGTTGAGGCACAAGAACGATATGCAGCTCAATCATCAAAAGATTCAGAGACAATTAAA
CAAAATGCAAACACAGCAAAAGAAGAAGCTGAAAATCTTGAATCAGAAGCAAATAATTTA
CGATCAAGAATTACAAGCACAGAGTCACGTTTTGGAAAATTAGAAGAATTAGCAGACAGA
GATGACTCACTGAGTGAAAGTGCAAAGGCTAAAGTTGGACAGGCAAAAACTGATACAGAA
GAAGTACAAAGAAAAATGCAAAAGGCATTAGACTTTATTAAGTCAATTACAAATGAACTT
GAAAATATGAGAGAAATCGGAATTGATGATTTAGAAGAATTAGATAAAAAATTAAACAAC
ACAGAAGAAGAACTTAATAGAGCAAAATTAGCTGATCGAATTGATGTTCTTAGAAATATT
CGAAATCGTCAATATTCTGACATCAAAAAATATCAAGCAGAAATTTCACTGCTTGAGAAA
GAGGTTGAAAATATAAGAGAAATTTCCAGTGCCTTGCCCAGTGGTTGCTTCAAACGAACT
CGACTTGAACCTTAA
>g8714.t1 Gene=g8714 Length=1624
MYLSNEFNRILIVLTLLNCAIAYISDSNYATTHISSSECYDNYGQPRRCIPEFENAAFNL
PVDATNTCGQEEDTDFCVQTGFSNFPKSCDVCREYDHTSVYLTDLHDPKSPTWWQSETIY
EGIQYPTAVNLTLNLGKSFDITYIRIVFYSPRPESFAIYKRVHQDGPWIPYQFYSATCRS
TYGLPDSLNIQKGENESRALCTSEYSDISPLQFGNIAFSSLEGRPSAYNFEHSIELQQWV
TATDIRISLNRLNTFGDELFGDKQVLKSYFYAIADIAVGARCKCNGHANRCVESTGLYGE
RKKVCECKHNTDGPDCEKCLPFYNDAPWGRATSKNAHECKQCNCNGYSNKCYFDRNLYNL
TGHGGHCIDCTANRDGPNCERCKENFYMRDDGYCIHCDCNPIGSRSLQCNSEGKCQCKKG
VTGEKCDRCEANHFNFGIHGCQSCDCNLSGSYDNTPSCDPETGFCSCKENVEGRHCRECK
PGFFNLDFDNKFGCTPCFCYGHTSECHSASGYSIVSLTSNFNKNKEKWSAIDENSKALDV
KYNILRQNIGILNSDSKSVYFNAPDRFLGDQRASYNRLLKFKLQLVKQRGPNPSPNDIVL
EGAGIKIFLPIFAQGQGMPDDQLKEYSFRLHEHPDYSWQPSQSSRQFMSILSNLTSIKIR
AIYADGGEAYLDDFELQTAHRGAAGNPAKWIEQCQCPEGYVGQFCESCAPGYRHSPANGG
PFMPCIPCDCNKHAEICDSETGRCICQHNTAGDNCDQCARGYYGNALTGTPYDCTRCPCP
DNGACMQLPDESIICLECPVGYFGARCEMCSDGYYGDPTGASGKIQLCQLCDCNGNIDPN
AVGNCNRTTGECLKCIHNTAGPHCNECLPGHFGDPFAIPHGSCEACSCYPRGSVQDEDGI
SICNPVSGDCQCKPNVIGKNCNECQSGFWNIASGEGCQSCKCDPIGSYNSSCNTYTGQCH
CKPGVTGLQCDKCEAYHYGFSAEGCQACDCDISGSKSAQCDEFGQCPCNPNVEGRTCNRC
KENKYDRNQGCLDCPACYNLVQDAANAHREELYAFKNVLQGISENPTVIEDTEFEARLRA
LNEKVNIVLEDAKAASGGSDISLTQKMENLNELLADIELNLDEVQLMHNTSNANVIETGK
NVDKVQQNIQQASDELNIALELIQTEGLVELERAKNRSLHIDHQNEQMSDISRTSRKIAE
DLEKNAENSKKIAKETRERATNASDLAKNSIELQRSITEQLKTKIVPDFSKEKKKIEALK
KLTSEALTKSENVYDEALTLFADINNVQIAEVNLEPIKENAKTLNEQINEIAAELDKALN
TNNEILSDLEDNLSLSLLLIKRGEAQKEDAIETLAHVVDSKELAEKAVKDGDDTLKKANN
TLYLLQSFSTQVQKSSESAKIALDDVEKIKTQMEETEELIRKTEQLLEESYNNAEKAKIN
AVEAQERYAAQSSKDSETIKQNANTAKEEAENLESEANNLRSRITSTESRFGKLEELADR
DDSLSESAKAKVGQAKTDTEEVQRKMQKALDFIKSITNELENMREIGIDDLEELDKKLNN
TEEELNRAKLADRIDVLRNIRNRQYSDIKKYQAEISLLEKEVENIREISSALPSGCFKRT
RLEP
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 59 | g8714.t1 | CDD | cd00055 | EGF_Lam | 281 | 328 | 3.60379E-8 |
| 61 | g8714.t1 | CDD | cd00055 | EGF_Lam | 397 | 442 | 1.22441E-11 |
| 55 | g8714.t1 | CDD | cd00055 | EGF_Lam | 443 | 495 | 5.17993E-12 |
| 56 | g8714.t1 | CDD | cd00055 | EGF_Lam | 693 | 720 | 0.00146645 |
| 60 | g8714.t1 | CDD | cd00055 | EGF_Lam | 727 | 769 | 1.31486E-13 |
| 58 | g8714.t1 | CDD | cd00055 | EGF_Lam | 831 | 875 | 2.51463E-10 |
| 53 | g8714.t1 | CDD | cd00055 | EGF_Lam | 885 | 938 | 2.38056E-11 |
| 54 | g8714.t1 | CDD | cd00055 | EGF_Lam | 939 | 986 | 3.51854E-14 |
| 57 | g8714.t1 | CDD | cd00055 | EGF_Lam | 987 | 1034 | 1.75085E-10 |
| 44 | g8714.t1 | Coils | Coil | Coil | 1107 | 1127 | - |
| 41 | g8714.t1 | Coils | Coil | Coil | 1135 | 1162 | - |
| 40 | g8714.t1 | Coils | Coil | Coil | 1199 | 1223 | - |
| 43 | g8714.t1 | Coils | Coil | Coil | 1294 | 1332 | - |
| 47 | g8714.t1 | Coils | Coil | Coil | 1399 | 1454 | - |
| 46 | g8714.t1 | Coils | Coil | Coil | 1456 | 1490 | - |
| 45 | g8714.t1 | Coils | Coil | Coil | 1544 | 1571 | - |
| 42 | g8714.t1 | Coils | Coil | Coil | 1581 | 1608 | - |
| 29 | g8714.t1 | Gene3D | G3DSA:2.60.120.1490 | - | 32 | 307 | 1.7E-97 |
| 31 | g8714.t1 | Gene3D | G3DSA:2.10.25.10 | Laminin | 309 | 400 | 4.2E-21 |
| 36 | g8714.t1 | Gene3D | G3DSA:2.10.25.10 | Laminin | 401 | 442 | 1.6E-9 |
| 34 | g8714.t1 | Gene3D | G3DSA:2.10.25.10 | Laminin | 443 | 495 | 1.4E-14 |
| 37 | g8714.t1 | Gene3D | G3DSA:2.10.25.10 | Laminin | 680 | 725 | 3.9E-5 |
| 38 | g8714.t1 | Gene3D | G3DSA:2.10.25.10 | Laminin | 727 | 774 | 2.6E-12 |
| 33 | g8714.t1 | Gene3D | G3DSA:2.10.25.10 | Laminin | 777 | 828 | 2.5E-12 |
| 39 | g8714.t1 | Gene3D | G3DSA:2.10.25.10 | Laminin | 829 | 885 | 1.7E-18 |
| 35 | g8714.t1 | Gene3D | G3DSA:2.10.25.10 | Laminin | 886 | 938 | 4.5E-17 |
| 32 | g8714.t1 | Gene3D | G3DSA:2.10.25.10 | Laminin | 939 | 986 | 2.7E-13 |
| 30 | g8714.t1 | Gene3D | G3DSA:2.10.25.10 | Laminin | 987 | 1033 | 7.2E-8 |
| 82 | g8714.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1449 | 1474 | - |
| 14 | g8714.t1 | PANTHER | PTHR10574:SF270 | LAMININ SUBUNIT GAMMA-1 | 30 | 1623 | 0.0 |
| 15 | g8714.t1 | PANTHER | PTHR10574 | NETRIN/LAMININ-RELATED | 30 | 1623 | 0.0 |
| 19 | g8714.t1 | PRINTS | PR00011 | Type III EGF-like signature | 903 | 921 | 2.7E-24 |
| 17 | g8714.t1 | PRINTS | PR00011 | Type III EGF-like signature | 952 | 970 | 2.7E-24 |
| 16 | g8714.t1 | PRINTS | PR00011 | Type III EGF-like signature | 971 | 999 | 2.7E-24 |
| 18 | g8714.t1 | PRINTS | PR00011 | Type III EGF-like signature | 999 | 1017 | 2.7E-24 |
| 1 | g8714.t1 | Pfam | PF00055 | Laminin N-terminal (Domain VI) | 49 | 279 | 4.7E-73 |
| 8 | g8714.t1 | Pfam | PF00053 | Laminin EGF domain | 282 | 334 | 7.9E-6 |
| 4 | g8714.t1 | Pfam | PF00053 | Laminin EGF domain | 342 | 391 | 8.8E-5 |
| 7 | g8714.t1 | Pfam | PF00053 | Laminin EGF domain | 397 | 436 | 2.9E-8 |
| 9 | g8714.t1 | Pfam | PF00053 | Laminin EGF domain | 444 | 494 | 5.9E-11 |
| 13 | g8714.t1 | Pfam | PF00052 | Laminin B (Domain IV) | 560 | 692 | 1.7E-28 |
| 12 | g8714.t1 | Pfam | PF00053 | Laminin EGF domain | 693 | 717 | 5.3E-4 |
| 6 | g8714.t1 | Pfam | PF00053 | Laminin EGF domain | 728 | 774 | 2.7E-10 |
| 5 | g8714.t1 | Pfam | PF00053 | Laminin EGF domain | 777 | 819 | 1.1E-4 |
| 3 | g8714.t1 | Pfam | PF00053 | Laminin EGF domain | 831 | 876 | 1.3E-9 |
| 11 | g8714.t1 | Pfam | PF00053 | Laminin EGF domain | 886 | 937 | 3.1E-10 |
| 10 | g8714.t1 | Pfam | PF00053 | Laminin EGF domain | 940 | 985 | 3.2E-10 |
| 2 | g8714.t1 | Pfam | PF00053 | Laminin EGF domain | 988 | 1029 | 3.4E-6 |
| 49 | g8714.t1 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 22 | - |
| 50 | g8714.t1 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 9 | - |
| 51 | g8714.t1 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 10 | 17 | - |
| 52 | g8714.t1 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 18 | 22 | - |
| 48 | g8714.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 23 | 1624 | - |
| 81 | g8714.t1 | ProSitePatterns | PS01248 | Laminin-type EGF-like (LE) domain signature. | 465 | 499 | - |
| 80 | g8714.t1 | ProSitePatterns | PS01248 | Laminin-type EGF-like (LE) domain signature. | 744 | 779 | - |
| 79 | g8714.t1 | ProSitePatterns | PS01248 | Laminin-type EGF-like (LE) domain signature. | 959 | 990 | - |
| 95 | g8714.t1 | ProSiteProfiles | PS51117 | Laminin N-terminal domain profile. | 45 | 281 | 47.078 |
| 85 | g8714.t1 | ProSiteProfiles | PS50027 | Laminin-type EGF-like (LE) domain profile. | 282 | 341 | 12.959 |
| 92 | g8714.t1 | ProSiteProfiles | PS50027 | Laminin-type EGF-like (LE) domain profile. | 342 | 396 | 7.913 |
| 93 | g8714.t1 | ProSiteProfiles | PS50027 | Laminin-type EGF-like (LE) domain profile. | 397 | 443 | 18.538 |
| 87 | g8714.t1 | ProSiteProfiles | PS50027 | Laminin-type EGF-like (LE) domain profile. | 444 | 496 | 21.166 |
| 83 | g8714.t1 | ProSiteProfiles | PS51115 | Laminin IV type A domain profile. | 523 | 693 | 32.595 |
| 91 | g8714.t1 | ProSiteProfiles | PS50027 | Laminin-type EGF-like (LE) domain profile. | 682 | 727 | 7.437 |
| 90 | g8714.t1 | ProSiteProfiles | PS50027 | Laminin-type EGF-like (LE) domain profile. | 728 | 776 | 18.176 |
| 94 | g8714.t1 | ProSiteProfiles | PS50027 | Laminin-type EGF-like (LE) domain profile. | 777 | 830 | 7.665 |
| 84 | g8714.t1 | ProSiteProfiles | PS50027 | Laminin-type EGF-like (LE) domain profile. | 831 | 885 | 16.082 |
| 86 | g8714.t1 | ProSiteProfiles | PS50027 | Laminin-type EGF-like (LE) domain profile. | 886 | 939 | 18.557 |
| 88 | g8714.t1 | ProSiteProfiles | PS50027 | Laminin-type EGF-like (LE) domain profile. | 940 | 987 | 22.613 |
| 89 | g8714.t1 | ProSiteProfiles | PS50027 | Laminin-type EGF-like (LE) domain profile. | 988 | 1033 | 15.472 |
| 78 | g8714.t1 | SMART | SM00136 | LamNT_2 | 43 | 280 | 4.7E-115 |
| 66 | g8714.t1 | SMART | SM00180 | lamegf_3 | 282 | 339 | 2.1E-5 |
| 65 | g8714.t1 | SMART | SM00180 | lamegf_3 | 342 | 394 | 1.5E-6 |
| 63 | g8714.t1 | SMART | SM00180 | lamegf_3 | 397 | 441 | 5.9E-11 |
| 71 | g8714.t1 | SMART | SM00180 | lamegf_3 | 444 | 494 | 2.6E-12 |
| 62 | g8714.t1 | SMART | SM00281 | LamB_3a | 555 | 681 | 5.9E-41 |
| 69 | g8714.t1 | SMART | SM00180 | lamegf_3 | 683 | 725 | 1.4 |
| 75 | g8714.t1 | SMART | SM00181 | egf_5 | 724 | 756 | 100.0 |
| 68 | g8714.t1 | SMART | SM00180 | lamegf_3 | 728 | 774 | 5.2E-13 |
| 77 | g8714.t1 | SMART | SM00181 | egf_5 | 773 | 808 | 0.33 |
| 67 | g8714.t1 | SMART | SM00180 | lamegf_3 | 777 | 828 | 1.0E-5 |
| 70 | g8714.t1 | SMART | SM00180 | lamegf_3 | 831 | 883 | 2.5E-11 |
| 76 | g8714.t1 | SMART | SM00181 | egf_5 | 844 | 884 | 28.0 |
| 73 | g8714.t1 | SMART | SM00180 | lamegf_3 | 886 | 937 | 1.1E-12 |
| 74 | g8714.t1 | SMART | SM00181 | egf_5 | 923 | 971 | 88.0 |
| 72 | g8714.t1 | SMART | SM00180 | lamegf_3 | 940 | 985 | 5.5E-13 |
| 64 | g8714.t1 | SMART | SM00180 | lamegf_3 | 988 | 1031 | 2.3E-9 |
| 25 | g8714.t1 | SUPERFAMILY | SSF57196 | EGF/Laminin | 282 | 344 | 2.48E-9 |
| 23 | g8714.t1 | SUPERFAMILY | SSF57196 | EGF/Laminin | 397 | 437 | 1.23E-5 |
| 22 | g8714.t1 | SUPERFAMILY | SSF57196 | EGF/Laminin | 444 | 499 | 1.06E-8 |
| 20 | g8714.t1 | SUPERFAMILY | SSF57196 | EGF/Laminin | 728 | 779 | 2.79E-9 |
| 26 | g8714.t1 | SUPERFAMILY | SSF57196 | EGF/Laminin | 784 | 833 | 1.42E-5 |
| 24 | g8714.t1 | SUPERFAMILY | SSF57196 | EGF/Laminin | 831 | 877 | 1.67E-10 |
| 27 | g8714.t1 | SUPERFAMILY | SSF57196 | EGF/Laminin | 886 | 937 | 3.35E-7 |
| 21 | g8714.t1 | SUPERFAMILY | SSF57196 | EGF/Laminin | 940 | 981 | 7.53E-9 |
| 28 | g8714.t1 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 22 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K05635 (laminin, gamma 1)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
