Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g872 g872.t2 isoform g872.t2 6607718 6609244
chr_3 g872 g872.t2 exon g872.t2.exon1 6607718 6608019
chr_3 g872 g872.t2 exon g872.t2.exon2 6608205 6609244
chr_3 g872 g872.t2 cds g872.t2.CDS1 6608282 6609244
chr_3 g872 g872.t2 TTS g872.t2 6609267 6609267
chr_3 g872 g872.t2 TSS g872.t2 NA NA

Sequences

>g872.t2 Gene=g872 Length=1342
ATTGAAAAAATTTAAACTTTTTGTTTATGTTTAAAAATATTTACACTCTCTCATTTTCAA
AAATCTCTCTCTTTTTTATGTACTTACGCACACAGAGAAATTTTTTTACAAGCGGTTGAA
TTTCTTAGAGCAAATTTTAAGAATAATTGTGTAAAATCATTAAAAACTAATGAAATTTTT
TTTGCATTAAACTAACAATTTAAAGTGCTTATATTTGACAGAAGAGTTTTTAAAAACTAA
AATAAGAAAGTGACAGATTAAAGAATTATCATAAATTGATTTATAAAATATATTTAATTA
GTGAAAATCAAACAAAGATGTTACCGCAGTTTCTTTAAATGGCTGTAAATTATGGGAATT
TCCGCAAGGTTTAAACAAAATGTTTCGCAATATGCAAGCTATTCATATTTTTCAAACAAA
TTTGTCACGAATATCACGAGAAGATTTAGAAGAATACAAAACACTCATTCATTTACATAT
TGGTTATAATGAAATATTATTTTTGCAAGAAGATTTACTCACTGATATGAAGTCATTACA
ATTTTTTTCAGTTTATGAAAAAAACTTGCTTGTAATTCAACCAAATATTTTTAATGATTT
GAAAAGACTTAAATACATAGATTTTCGTCAATGCAATCTTGTCAATTTTTTATACAATTC
AGATGGTTTAGGTGATTGCAAAAGTTTGGAAGAAGTAAAAAAGAAACTCGAGGAAAAATA
TCAAGATTTACCATGGAAAAACTTTTTTGAGAAGATGCAAAAATTAGAAAAAGATTCAGA
GTTGCTAAAAGACCTTAAAAATGAATTGTACAAAGAAAATTTGAAAGATTTCAAAGTCAT
CGTTGATAAAGAAGAATTCAACACTCACAAAATTGTATTGGCAGCTCGCAGTCCAGTTTT
CACTGAAATGATCGAAAACAATCCTGATGCAGAAAGCTTGAATTTGGTTGACGTTTCACC
TGCAATATTCCATGAAATTTATAATTTTATGTATACAAATGAATTTCCAAATTTTGCAGA
TATCAACTTGGTTCATTTGTTGATTGCAAGTGAAAAATTAAAAATTAAAAAATTGTCAAA
ATTTGCAGCAAATAAGTTACTTAATAATATTACTAATGAAAATTCATTTGAGTTAATGAC
TTTGGGAAAGAAATATGATTATATAGAACTTCAGGAAAAGGCGTTTGCTAAAATTAAAGA
ATTCTTCAATGATGAGCAAATTGATGAAGCATTAGTAAACAAACCTGAGAAGTTGAAGAA
ATTGATTGACATTAAAAAAGAGAAAATTCGTTGTTTAGCTGAATTGGAAGAGAAATTCAA
ATCTGTATTGAATGAAGATTGA

>g872.t2 Gene=g872 Length=320
MFRNMQAIHIFQTNLSRISREDLEEYKTLIHLHIGYNEILFLQEDLLTDMKSLQFFSVYE
KNLLVIQPNIFNDLKRLKYIDFRQCNLVNFLYNSDGLGDCKSLEEVKKKLEEKYQDLPWK
NFFEKMQKLEKDSELLKDLKNELYKENLKDFKVIVDKEEFNTHKIVLAARSPVFTEMIEN
NPDAESLNLVDVSPAIFHEIYNFMYTNEFPNFADINLVHLLIASEKLKIKKLSKFAANKL
LNNITNENSFELMTLGKKYDYIELQEKAFAKIKEFFNDEQIDEALVNKPEKLKKLIDIKK
EKIRCLAELEEKFKSVLNED

Protein features from InterProScan

Transcript Database ID Name Start End E.value
10 g872.t2 CDD cd18186 BTB_POZ_ZBTB_KLHL-like 150 227 8.85362E-17
9 g872.t2 Coils Coil Coil 126 146 -
8 g872.t2 Coils Coil Coil 292 312 -
6 g872.t2 Gene3D G3DSA:3.80.10.10 Ribonuclease Inhibitor 1 126 3.6E-10
7 g872.t2 Gene3D G3DSA:3.30.710.10 Potassium Channel Kv1.1; Chain A 127 275 2.2E-27
2 g872.t2 PANTHER PTHR24413:SF213 FI01029P-RELATED 118 279 2.7E-20
3 g872.t2 PANTHER PTHR24413 SPECKLE-TYPE POZ PROTEIN 118 279 2.7E-20
1 g872.t2 Pfam PF00651 BTB/POZ domain 144 242 9.0E-19
12 g872.t2 ProSiteProfiles PS50097 BTB domain profile. 149 208 15.618
11 g872.t2 SMART SM00225 BTB_4 149 244 3.5E-19
4 g872.t2 SUPERFAMILY SSF52058 L domain-like 4 104 4.91E-11
5 g872.t2 SUPERFAMILY SSF54695 POZ domain 133 244 5.02E-21

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005515 protein binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values