Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g873 g873.t1 TSS g873.t1 6609362 6609362
chr_3 g873 g873.t1 isoform g873.t1 6609634 6610803
chr_3 g873 g873.t1 exon g873.t1.exon1 6609634 6610803
chr_3 g873 g873.t1 cds g873.t1.CDS1 6609634 6610803
chr_3 g873 g873.t1 TTS g873.t1 6611116 6611116

Sequences

>g873.t1 Gene=g873 Length=1170
ATGTCACAAAAAATACAATGTGAATTTAGAATCAAATGGAAGTTTAGAAAAAACCATTAT
TCTTGTGATATAAACAATCAAATGTTTAATGAAAACGAAAAAATAGAAATATATGGTAAA
CATCTTGAAGGAAAATCAAATGAAGATGTTAATGCAATCACCTTGATGAATTGTAAATTA
TCAAAATTTCCTCGCGGTTTAAAAATAATTTTTCCTTATTTGCAATCGATTCATATTTTT
AAGTCAAATTTGTCAAAACTATCAAAAGAGGATTTAAAAGAGTTCAAAACATTAAAGCAA
TTATATTTGGAAGACAACGAAATTTTATTTTTGCAAGAAAATTTATTTTCTGATATGAAA
TCATTAGAGATTTTATCAGTTCATGAGCAAAATTTGCTTGTAATTGAACCAAATATTTTC
AACAATTTGGAAAATATAAAATGTATAGATTTTCGTCAATGCAATCTCGTTAATTTTGTA
TACAATTCAGATGGTTCAGGAGATTGTAAAACTTTAGAAGAAGTTAAAATAAAACTTCAA
GAGATACCTCAAGTTTTTGCGTTAAAGCTACTTTTTGATAAGTTGCAAGAATTAGAAAGG
GATTCTAAATTTTTAAAAGAACTTAAAACTGCAATGAACAAAGAAAATTTTAAAGACTTC
AATGTCATTGTTGATAAAGAACAATTTCATGCTCACAAACTTGTTTTAGCAGCTCGCAGT
CCAGTTTTTGCTGAAATGATCGAAAATAATTCAGACCTTGAAAGTTTGAACCTTGTTGAT
ATTTCACCTGATATTTTTCGAGAAGTTTATAATTTTATGTATACAAATGAATTTCCAAAT
CCAGAAAATGTCAATTTGGTTCATTTGTTGATTGCAAGTGAAAAATTGAAAATCAAGAAC
TTAGCAGATTTTGCAGCAAATACGTTATTAAATAAAATTATTGATGAGAATGCTTTTGAG
TTATTGACTTTGGGAAGGAAATATGATTATAAAGAGCTTCAAGAAAAATCATTTAAGAAA
ATTAAGGAATTCTTTGATGGTGAGCATATTGATGAAGGACTGATCAACAAACCTGAGACA
CTTAAGAAACTGATCGATTTGAAAAGGGAGAAAATTCGTTATTTAGCTGAATTGGAACAA
AAATTCAAATCTATTATGAAGGAAAATTAA

>g873.t1 Gene=g873 Length=389
MSQKIQCEFRIKWKFRKNHYSCDINNQMFNENEKIEIYGKHLEGKSNEDVNAITLMNCKL
SKFPRGLKIIFPYLQSIHIFKSNLSKLSKEDLKEFKTLKQLYLEDNEILFLQENLFSDMK
SLEILSVHEQNLLVIEPNIFNNLENIKCIDFRQCNLVNFVYNSDGSGDCKTLEEVKIKLQ
EIPQVFALKLLFDKLQELERDSKFLKELKTAMNKENFKDFNVIVDKEQFHAHKLVLAARS
PVFAEMIENNSDLESLNLVDISPDIFREVYNFMYTNEFPNPENVNLVHLLIASEKLKIKN
LADFAANTLLNKIIDENAFELLTLGRKYDYKELQEKSFKKIKEFFDGEHIDEGLINKPET
LKKLIDLKREKIRYLAELEQKFKSIMKEN

Protein features from InterProScan

Transcript Database ID Name Start End E.value
10 g873.t1 CDD cd18186 BTB_POZ_ZBTB_KLHL-like 219 296 1.45835E-19
9 g873.t1 Coils Coil Coil 188 215 -
8 g873.t1 Coils Coil Coil 361 381 -
6 g873.t1 Gene3D G3DSA:3.80.10.10 Ribonuclease Inhibitor 21 187 9.4E-12
7 g873.t1 Gene3D G3DSA:3.30.710.10 Potassium Channel Kv1.1; Chain A 194 344 1.8E-30
2 g873.t1 PANTHER PTHR24413:SF213 FI01029P-RELATED 159 352 3.1E-22
3 g873.t1 PANTHER PTHR24413 SPECKLE-TYPE POZ PROTEIN 159 352 3.1E-22
1 g873.t1 Pfam PF00651 BTB/POZ domain 209 310 6.6E-21
12 g873.t1 ProSiteProfiles PS50097 BTB domain profile. 218 282 17.335
11 g873.t1 SMART SM00225 BTB_4 218 313 4.2E-23
4 g873.t1 SUPERFAMILY SSF52058 L domain-like 53 159 2.78E-14
5 g873.t1 SUPERFAMILY SSF54695 POZ domain 202 312 1.62E-22

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005515 protein binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values