General information for g8735.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Probable peroxisomal acyl-coenzyme A oxidase 1.
Parent gene
- The parent gene g8735 is located on chr_2: 32700233..32700735 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8735 | g8735.t3 | TSS | g8735.t3 | 32697576 | 32697576 |
| chr_2 | g8735 | g8735.t3 | isoform | g8735.t3 | 32697887 | 32699289 |
| chr_2 | g8735 | g8735.t3 | exon | g8735.t3.exon1 | 32697887 | 32698010 |
| chr_2 | g8735 | g8735.t3 | cds | g8735.t3.CDS1 | 32697887 | 32698010 |
| chr_2 | g8735 | g8735.t3 | exon | g8735.t3.exon2 | 32698074 | 32698233 |
| chr_2 | g8735 | g8735.t3 | cds | g8735.t3.CDS2 | 32698074 | 32698233 |
| chr_2 | g8735 | g8735.t3 | exon | g8735.t3.exon3 | 32698290 | 32698714 |
| chr_2 | g8735 | g8735.t3 | cds | g8735.t3.CDS3 | 32698290 | 32698714 |
| chr_2 | g8735 | g8735.t3 | exon | g8735.t3.exon4 | 32698882 | 32699289 |
| chr_2 | g8735 | g8735.t3 | cds | g8735.t3.CDS4 | 32698882 | 32699288 |
| chr_2 | g8735 | g8735.t3 | TTS | g8735.t3 | NA | NA |
Sequences
>g8735.t3 Gene=g8735 Length=1117
ATGACAAAGACAAAAATCAATCCTGACTTGCAAGAAGAGAGAGATAAAATTGCATTTAAT
ATTGAAGAATTTACTAATTGGTATTACAAAGGTGCTGAAAAGGTTGAAGAGAAAAGATTT
TTGGAGGATTTTTTCCTATCAGATCAAGAATTGATGGACAAAGTTCCAATAAGTTATTTG
AGTCATAAGGAAAAATATGAACAAGCAATTCGTAAAGTTGTTCTTGTTGTCAAGAAAATT
CAAGAATTGCAAGCTCAAGGTCGTGCTAGTGTTGATATTTACATGGCGTTGTTGGGAGGA
ACTTTAGGAACAGCACTTTTTAATGAGTCAAATCCAATTACCGTCCATTTTGTAATGTTT
TTACCAGCATTAATGAATCATGGAACAAGTGATCAACAAGCACTTTGGATTTCACGTGCT
TGGAATTGCAACATTATTGGCACTTATGCTCAGACAGAGCTCGGTCATGGAACTTATATT
CGTGGACTTGAAACTACAGCTACTTATGATCCAGCGACTAAAGAATTTGTTTTAAATTCA
CCAACTTTGACTTCCTACAAATGGTGGCCAGGCGGAATGGGACATACTGCAAATTATGCG
ATTGTTATTGCACAACTTTATTCTCTTGGCAAACATCATGGCATTCAACCATTCATTGTA
CAATTGAGAGATGAGGAAACACACAAGCCAATGCCTGGTATTAAAATAGGTGAAATTGGA
AATAAAGTTGGTATGAATACTGTCAATAATGGTTTTCTAGCATTTGATAATGTAAGAATT
CCATTAAATCATATGTTAATGAAAAATGCAAAAGTATTAGAAGATGGTCAATTTATAAAG
CCCAAATCTAGCGTCCTTACATATGGAACAATGATGTTTGTACGAGTGGTGATCTTAAAA
GATATGGCAAGTTACTTATCTAAAGCTGTCACAATCGCTCTTCGGTATTCACTTGTAAGA
CGTCAAAGTCCAATTGAGCCAAACAAACCAGAGCCAAAAATCATTGAACACGTCACACAA
CAATTTAAAATTTTCCCAGCTGTTGCTAAAGTCGTTGTATTTAAGATAACAGCAGAATTT
TTATGGGATATGTATAATGCAGTAACACATGATTTAG
>g8735.t3 Gene=g8735 Length=372
MTKTKINPDLQEERDKIAFNIEEFTNWYYKGAEKVEEKRFLEDFFLSDQELMDKVPISYL
SHKEKYEQAIRKVVLVVKKIQELQAQGRASVDIYMALLGGTLGTALFNESNPITVHFVMF
LPALMNHGTSDQQALWISRAWNCNIIGTYAQTELGHGTYIRGLETTATYDPATKEFVLNS
PTLTSYKWWPGGMGHTANYAIVIAQLYSLGKHHGIQPFIVQLRDEETHKPMPGIKIGEIG
NKVGMNTVNNGFLAFDNVRIPLNHMLMKNAKVLEDGQFIKPKSSVLTYGTMMFVRVVILK
DMASYLSKAVTIALRYSLVRRQSPIEPNKPEPKIIEHVTQQFKIFPAVAKVVVFKITAEF
LWDMYNAVTHDL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 10 | g8735.t3 | Coils | Coil | Coil | 66 | 86 | - |
| 7 | g8735.t3 | Gene3D | G3DSA:1.10.540.10 | - | 20 | 146 | 2.5E-40 |
| 8 | g8735.t3 | Gene3D | G3DSA:2.40.110.10 | - | 147 | 285 | 9.1E-57 |
| 9 | g8735.t3 | Gene3D | G3DSA:1.20.140.10 | - | 286 | 372 | 1.0E-21 |
| 3 | g8735.t3 | PANTHER | PTHR10909:SF250 | ACYL-COENZYME A OXIDASE | 7 | 371 | 4.3E-136 |
| 4 | g8735.t3 | PANTHER | PTHR10909 | ELECTRON TRANSPORT OXIDOREDUCTASE | 7 | 371 | 4.3E-136 |
| 1 | g8735.t3 | Pfam | PF14749 | Acyl-coenzyme A oxidase N-terminal | 20 | 146 | 1.5E-38 |
| 2 | g8735.t3 | Pfam | PF02770 | Acyl-CoA dehydrogenase, middle domain | 149 | 258 | 5.6E-14 |
| 5 | g8735.t3 | SUPERFAMILY | SSF56645 | Acyl-CoA dehydrogenase NM domain-like | 93 | 277 | 1.07E-50 |
| 6 | g8735.t3 | SUPERFAMILY | SSF47203 | Acyl-CoA dehydrogenase C-terminal domain-like | 286 | 370 | 1.33E-17 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016627 | oxidoreductase activity, acting on the CH-CH group of donors | MF |
| GO:0050660 | flavin adenine dinucleotide binding | MF |
| GO:0055114 | NA | NA |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
