General information for g8735.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Probable peroxisomal acyl-coenzyme A oxidase 1.
Parent gene
- The parent gene g8735 is located on chr_2: 32700233..32700735 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8735 | g8735.t4 | isoform | g8735.t4 | 32699289 | 32700735 |
| chr_2 | g8735 | g8735.t4 | exon | g8735.t4.exon1 | 32699289 | 32699921 |
| chr_2 | g8735 | g8735.t4 | cds | g8735.t4.CDS1 | 32699448 | 32699921 |
| chr_2 | g8735 | g8735.t4 | exon | g8735.t4.exon2 | 32699973 | 32700735 |
| chr_2 | g8735 | g8735.t4 | cds | g8735.t4.CDS2 | 32699973 | 32700233 |
| chr_2 | g8735 | g8735.t4 | TTS | g8735.t4 | 32700717 | 32700717 |
| chr_2 | g8735 | g8735.t4 | TSS | g8735.t4 | NA | NA |
Sequences
>g8735.t4 Gene=g8735 Length=1396
GATAAAGGTGATTTAGAAAGATTGCCAGAGCTTCATGCACTTTCATGTTGTTTAAAAGCT
GTATGCACTAATGAAGCAGCACAAGCTGTTGAAACTTGTCGTCTTGCATGTGGTGGACAT
GGATATTTGAATGCTGCTGGTTTTCAAGATATCTATGGTATGGTAACAGCAGCACAAACA
TATGAAGGTGAAAATACAGTGATGTTTTTGCAAACTGCGCGGTATTTAATCAAAGCATGG
AATCAAGCAATGAATAATGAAAAATTGACACCAACAGTTGCATATCTTGAGAATTATGTT
AATGGCAAAAACTCAAAGCAGCCATTTGAAAATTCAACTCGTGGAATTTTGAGAGCTTTT
CAATTTGCTGCTGCTAAAAAAATTGCAGAAGGAAATCAACAATTGGAAAAACGAAAGAAG
ACACTTTCACCTGAAGAAGCTGCAAATCAAACTGGATTGGTTTTGACTAAAGCATCAGAA
CTTCATTGTCAAGCATTTTTATTGCAAGCTGCGATCGAAGTTCTTGAAGAATCAGCAAAA
AATGTTTCACCACAACTTGGAGCTGTTTTTAAAGATTTGCTTGAACTTTATTCCGTTGAT
TTGGCATTAAGATATACCGGTTTCTTATTGGAGTTTTCAAACATGACATCAAAAGATATT
CAATCATTACAAGAAACACTTGAAGCATCACTTAAGAAACTTCGTTATAATGCACTTGGT
ATTTGTGAAGGTTTTGATCATCCTGATGGAATTTTAAATTCAGTACTTGGAACACATGAT
GGAAATGTCTATGAGAATCTCATTAATGCTGCAATGAAATCACCACTTAATCAGGAAGAT
GTCAACAAATCATTCCATGAACATTTGAAACCATTCATGAAATCAAACTTGTAAAAAAAT
TCCTCTATGAGCTTTCCAGTGAATTATTTTTCTAATGATTATTAATGACATGTCACATGT
GGTGGTATTTTTTTTTTGATATTCACGATAAAAAATTTTCTTTCTTCTTTTGCTTTAAGA
TTTTCAAATATTTTTCAAGAGAACATGGAAATTAAAGTGTAAAATTAGACATTGAAAATT
TATGACATTTAAGTAAAAAAAATTTGAATTTTTGATGTCATAAAACAAATTTTGAAAATT
CTACAACTTTTAAAAAAATTCGATGTTATTCATAGAATTCTATGTTTTTTATGACAACAA
TTGTAAACAAGAGAAAAAATCTATCTGAAAAAAAAAATTAAATCAAAGAATTTCAAAATA
TTTACCTTAATAGATTTTTATCGCTATTTTTCCACCTTAAAATAAAAAAAGTAATTTTTA
TACTTTATATATTCTGTGTTAAAAAAACAATCAAATCAAAATAAATAAAATTCAGAAAAA
AGTTGTTCTCTTTGAA
>g8735.t4 Gene=g8735 Length=244
MVTAAQTYEGENTVMFLQTARYLIKAWNQAMNNEKLTPTVAYLENYVNGKNSKQPFENST
RGILRAFQFAAAKKIAEGNQQLEKRKKTLSPEEAANQTGLVLTKASELHCQAFLLQAAIE
VLEESAKNVSPQLGAVFKDLLELYSVDLALRYTGFLLEFSNMTSKDIQSLQETLEASLKK
LRYNALGICEGFDHPDGILNSVLGTHDGNVYENLINAAMKSPLNQEDVNKSFHEHLKPFM
KSNL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g8735.t4 | Gene3D | G3DSA:1.20.140.10 | - | 1 | 33 | 1e-05 |
| 7 | g8735.t4 | Gene3D | G3DSA:1.20.140.10 | - | 60 | 193 | 0e+00 |
| 2 | g8735.t4 | PANTHER | PTHR10909:SF250 | ACYL-COENZYME A OXIDASE | 3 | 243 | 0e+00 |
| 3 | g8735.t4 | PANTHER | PTHR10909 | ELECTRON TRANSPORT OXIDOREDUCTASE | 3 | 243 | 0e+00 |
| 1 | g8735.t4 | Pfam | PF01756 | Acyl-CoA oxidase | 62 | 241 | 0e+00 |
| 4 | g8735.t4 | SUPERFAMILY | SSF47203 | Acyl-CoA dehydrogenase C-terminal domain-like | 3 | 45 | 0e+00 |
| 5 | g8735.t4 | SUPERFAMILY | SSF47203 | Acyl-CoA dehydrogenase C-terminal domain-like | 60 | 242 | 0e+00 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016627 | oxidoreductase activity, acting on the CH-CH group of donors | MF |
| GO:0006635 | fatty acid beta-oxidation | BP |
| GO:0003997 | acyl-CoA oxidase activity | MF |
| GO:0005777 | peroxisome | CC |
| GO:0055114 | NA | NA |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
