General information for g8737.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Chitotriosidase-1.
Parent gene
- The parent gene g8737 is located on chr_2: 32714270..32725419 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8737 | g8737.t1 | TTS | g8737.t1 | 32712580 | 32712580 |
| chr_2 | g8737 | g8737.t1 | isoform | g8737.t1 | 32713446 | 32725419 |
| chr_2 | g8737 | g8737.t1 | exon | g8737.t1.exon1 | 32713446 | 32713694 |
| chr_2 | g8737 | g8737.t1 | cds | g8737.t1.CDS1 | 32713446 | 32713694 |
| chr_2 | g8737 | g8737.t1 | exon | g8737.t1.exon2 | 32714270 | 32714881 |
| chr_2 | g8737 | g8737.t1 | cds | g8737.t1.CDS2 | 32714270 | 32714881 |
| chr_2 | g8737 | g8737.t1 | exon | g8737.t1.exon3 | 32717206 | 32721487 |
| chr_2 | g8737 | g8737.t1 | cds | g8737.t1.CDS3 | 32717206 | 32721487 |
| chr_2 | g8737 | g8737.t1 | exon | g8737.t1.exon4 | 32721541 | 32722289 |
| chr_2 | g8737 | g8737.t1 | cds | g8737.t1.CDS4 | 32721541 | 32722289 |
| chr_2 | g8737 | g8737.t1 | exon | g8737.t1.exon5 | 32722366 | 32722661 |
| chr_2 | g8737 | g8737.t1 | cds | g8737.t1.CDS5 | 32722366 | 32722661 |
| chr_2 | g8737 | g8737.t1 | exon | g8737.t1.exon6 | 32722821 | 32722911 |
| chr_2 | g8737 | g8737.t1 | cds | g8737.t1.CDS6 | 32722821 | 32722911 |
| chr_2 | g8737 | g8737.t1 | exon | g8737.t1.exon7 | 32722978 | 32723101 |
| chr_2 | g8737 | g8737.t1 | cds | g8737.t1.CDS7 | 32722978 | 32723101 |
| chr_2 | g8737 | g8737.t1 | exon | g8737.t1.exon8 | 32723165 | 32723257 |
| chr_2 | g8737 | g8737.t1 | cds | g8737.t1.CDS8 | 32723165 | 32723257 |
| chr_2 | g8737 | g8737.t1 | exon | g8737.t1.exon9 | 32723321 | 32723496 |
| chr_2 | g8737 | g8737.t1 | cds | g8737.t1.CDS9 | 32723321 | 32723496 |
| chr_2 | g8737 | g8737.t1 | exon | g8737.t1.exon10 | 32723872 | 32724057 |
| chr_2 | g8737 | g8737.t1 | cds | g8737.t1.CDS10 | 32723872 | 32724057 |
| chr_2 | g8737 | g8737.t1 | exon | g8737.t1.exon11 | 32724117 | 32724414 |
| chr_2 | g8737 | g8737.t1 | cds | g8737.t1.CDS11 | 32724117 | 32724414 |
| chr_2 | g8737 | g8737.t1 | exon | g8737.t1.exon12 | 32724470 | 32724491 |
| chr_2 | g8737 | g8737.t1 | cds | g8737.t1.CDS12 | 32724470 | 32724491 |
| chr_2 | g8737 | g8737.t1 | exon | g8737.t1.exon13 | 32724578 | 32724703 |
| chr_2 | g8737 | g8737.t1 | cds | g8737.t1.CDS13 | 32724578 | 32724703 |
| chr_2 | g8737 | g8737.t1 | exon | g8737.t1.exon14 | 32724769 | 32724837 |
| chr_2 | g8737 | g8737.t1 | cds | g8737.t1.CDS14 | 32724769 | 32724837 |
| chr_2 | g8737 | g8737.t1 | exon | g8737.t1.exon15 | 32724905 | 32725031 |
| chr_2 | g8737 | g8737.t1 | cds | g8737.t1.CDS15 | 32724905 | 32725031 |
| chr_2 | g8737 | g8737.t1 | exon | g8737.t1.exon16 | 32725297 | 32725419 |
| chr_2 | g8737 | g8737.t1 | cds | g8737.t1.CDS16 | 32725297 | 32725419 |
| chr_2 | g8737 | g8737.t1 | TSS | g8737.t1 | NA | NA |
Sequences
>g8737.t1 Gene=g8737 Length=7623
ATGCGACTCATACACAACGGCCTTGGAATTTTGGTAGCGTTTCTTGCGGCCTCTTTTATC
AATAATGCTGCATCAGAGCCGCGTGTTGTGTGTTATTACACAAATTGGTCTGTCTACCGT
CCTGGAACAGCGAAATTCAATCCACAAAATATTAATCCTTATTTATGCACACATTTAATT
TATGCTTTTGGTGGTTTTACAAAAGACAATCAGCTGAAACCATTTGATAAATATCAAGAT
ATTGAGCAAGGCGGTTATGCAAAGTTTACGGGACTTAAAACTTACAATAAAGAGCTGAAA
ACAATGCTCGCTATTGGAGGTTGGAATGAAGGTAGCACAAGGTTCTCGCCACTTGTCGCT
AGTGCTGATCGACGTGCTCAGCTTGTTAAAAATACAATAAAATTTTTGAGACAGAACAAG
TTTGATGGCTTAGACTTGGATTGGGAATATCCTGCATTCAGAGATGGCGGAAAGGCAAAA
GATCGTGAAAATTATGCAAAACTCGTTCAAGAGCTGCGTGAGGAATTTGATCGTGAACAT
CAAAAAACTGGACGACCACGATTGCTCTTGACCATGGCCGTGCCAGCTGGTTTCGAATAT
ATTGACAAAGGCTATGATGTGCCAAAACTCAATAAATATCTCGATTGGTTTAATTTGCTC
AGTTATGATTATCACTCAGCTTATGAACCAGCAGTTAATCATCATGCACCACTTTATCCT
ATTGAAGAAGAAAATGAATATAGCTTTGATAATGACTTAAATATCAATGCAACAATTAAC
TACTATATAAAAAGTGGTGCCGATCGTGATAAATTGGTTCTAGGAATTCCAACTTATGGA
CGATCATATACTTTATTTAATCCTGAATCAAATGAAATTGGTGCTCCTGCTGATGGACCA
GGTGACCAAGGTGATGCAACACGTGAAAAAGGTTATTTGGCTTATTATGAGATTTGCCAA
AGTTTAAAAGAACCAGATTCAACATGGACAGTTGTCCAACCAAATCCAGAAGCATTAGGA
CCTTATGCATATAGTGAAAATCAATGGGTTGGCTATGATGATGAAGAAATTGTCAGAAGA
AAATCAGAATTTGTTGTTGAACAGAAATTGGGCGGAATTATGTTTTGGTCAATTGACAAT
GACGATTTCCGAGGATTGTGTAATAACAAGCCATATCCACTTATTGAAGCTGCAAAAGAG
TCTTATCTTGATGGACTTGAAAATGGTGTACAAAGAAAGTCTTTGAGTGGCGCAAATAAA
CGCAAACAAACGACCACAACGACACGTAAACCAGATTCAAAGAAGAGCGGTAAAACAACA
ACACCAGCACCACCCACAACTCCGACATCTGGCAGTGATTTTAAATGTGAAGAGGAAGGT
TTCTACCCACATCCAAGTGATTGTGCAAAATATTTCTGGTGTTTAGAAGCTCCAGGTCTT
GGAATTGTCGCTCATCATTTCTCATGCCCTTCGGGCTTATTATTTAATAAGCAAGCAGAC
TCATGTGATTATGCTAGAAATGTTTATTGTACAACGAAAAAAGCAACAACAACAACAGAA
GCTGCACCAGTTTGGACAACAACAGTTAAAACAACAACAACGACAAGTGAGAAACCAATT
TATAATAAAGTTAGTTCAATTTATAAAGCACCAAGTAGAACGACAACAACAACAACATTA
TCGCCTGCCATTGACATTGATTCATCTGATCTTGAGCAAGAAGATCCAAAAGTTATTAAG
GAACTGATTGAATTGATCAAGAAAGCTGGTGGCATTGAAGAGTTAGAGAAGCAAATTAGC
ATACAAGAGGACAACAGCAATTCAGGTGGAAAATCTTCCGCTACAACACCAGCAACTCTC
ATTAATAAGACATTGGTTGACAAATTTAAAAATCGCGCATCGCTCTTTAAAACGCGTCCA
ATATTTAATGGCGCATCTCAAGCGGAACGAAAAACAGTTGAACAAAAAACAAGCAGCACA
TCAACACAAAAAGCTATTGCCTCGAGCAGCAGCAGCAGTGATGAAAAATCGTCATCAGTA
GCAAAGAAATATAATTCAATTAATCGATTTAGTCGACCTGAACCACAAAATACTGGTGTT
GATGAAATTCCTCAAGATGATGCTGTTCTGATTGAAAAACCTCAATATACTTCAATTCAA
AGAAGAAGGCCAGTCAAACCTGAGGTTATTGCTGAAAATGATTATAACAATGATTCAGAT
AGATCAAATGAAAATACATCAAAATTATCATCAGTTAGAGAAGATGAAGTAAGTAAAAAA
TACACGAGCATTACACGGCAAAGAAAGCCAGTAGTGACAGAAGTTGTCGAGTCTGAAGAA
GATGAAGACGAGGATGAAATTGAAGATGAAGAAGAGGAAGAAGAAATTACAACAAAATCA
ACAACAGTAGCAACAAAAGCACCAACAAAATATATTAATTTGAGTAGAAGACGATCAACA
ACTGCTGCACCAGATGAAAAACCACAACAGCAGGAAGAAAAAATAGAAGCAGTACAAGCA
AGTACACAATCATCATCATCATTCCGTAGACGTGTCACAACGACAGTAGTGCCAACATCG
AGTGCAGTTACACAGGCAGCAGTAGCAGTAACAGAAAAAACGGTATTAACTCTCGATAAT
AACAGTGATAATCAAATTTTACCAAGATTCTCACTTGATAATACATTATTCAAGAGAGAA
CAGGATTCATTAAATGTTAATAGACACTTACACGACGACGATGACGACATCAATCACATT
GCTCTACCAACAGAATCAATAACAGAAAATTTACCAATTCCCGATACCACAATCACCATC
ACCACCACTACACAATTCCCTAGCTTATCTTTATCCTCCCAAATTAATAATGCTAATAAT
GAACAGGTAAACGAAAGTGCCACGGAAAGTGTCACTGATAGTTCTGTTGATGATATTGAT
TTGACAACCATCATTAATGATAATGATGATGAAATTATTGAAAATGGCTTATCTAAGAAC
AACGTGAATATTCAAAAAACTAATTTCTTTGCACCTAGACCATTTGCACGCACAAAACCT
TCTCCTTCTTCCACTATTTCTACTTCTTCTCTTTCACCCACTCGAAATTTCCCTTCACGT
AAAAATTTTAACAGCAAATCTGATATTATTGATAATGAAACTTCTCCAACGAAAACAATT
CGACGTCGTCCGACAGTGACAAGAACTTTTGCATCTACAACTGAATCAAGTGATGAAGAA
GATGAAGCACCACGAACAAGACCAACTTATAGTTATAGACCAGGCTATCGTGGCACAGCA
CGTTTTAGATATTCAACATCAAAAACAGGTGAATATGATAAAAGTCGATTGGAAGGAAAT
TATCAGCCTATTGATGACAATCGTTTGAGATCATTAAATTTGGAAAGAGCGAATAACAGA
CCTGCTACAACAGCTACAACTGAAAGAACAACCATAGAAGATAGAACAACAACAAGAAGA
AGACCATTTGCAACCAGAACTCAAGCTGTTTCAAAAACATCAACCCAAGCACCTGAAAGT
AATGAAGAAACAACGACAGAATACAGAATTATTGAGGCAAAAAATCGATTCAATTTAAAT
GAAGGTGAACGACCTGATAGAATTCGATTTGAATTATCAGCTGGTGGAAAAATTAACTTT
GGAAGTTCATTTACAAAAGCTAAAGAGAAGCCAACACTTGCAACTAAAGAACCTGATTCA
AAAGTAAAAGTTATAACTGGCCCATTGGATAAATCACCATTGATTGAGTCAGGAAGATTG
TATAAGAAAGGTCATGTTGAAGAAATTCCAATTCAAAAAGAACCAGAGTCAGTTACAGTC
CAAAGTCATTCTAATAAATTAGATTTGAGTGAAATTCCATTAAATAAATCTGATATTGCT
AGCTTTGTGTCAAATGATGATTTAAAATCAGATGAAACCACAAAAAGACCAAGATTGAAA
CCGAGTGTTGTTGGATTTAAGAAACGAATTGAAAACGAAGAAGAACCATCGACAACAGCT
TCTATTGAAGAAATTGAGACAACGACAAAAACTAGATCAAGATTAAGACCAAGTCAAAGT
CGATTTGCACAACGTGAGCAAGCAAGAATTGAAGGTGAAGTAAAGGATGAATTGTCAGAA
GAAATTTCATCGAAGAAAATTTTGACAAGAAATAGAATATCACAGCGTGGTAGAGAAAGA
TCAGATTCATCAGAAAGAGAATTTGTAAGAAAGTCTCAAATAACACCAGATCAAAATGAT
AGATCAGAGACAGCAAGTCCAAAAAGTTTCCAAAGTAGATTTTCAGGTAGAACGAGAGCA
CAAGTTGCCAAAGAAATCAATAGTCTTCAAGAGTCGACAGCATCAGAAGAATTAACAACA
AAAAGTTATCTAACAAGGGTAAAAGCAAGTGATTTGTTCTTAAAAAATAGAAAATCTAAT
GCAGTTGCAGACAGTGAAAATTCCGAGTCACAAAATAATTTTGAAGAGACAAGCACTTTA
AGAGAACGATTTAGGCCAAATAAAAATCGATTTGTGACACAAGAATCATCGACTGATTTT
GACATTCAAGACTTAGTAACTGACAGACCATCATTTGAAGAAAATGAAATTGACTTTACG
ACAATTGAAAATTCTGAAGAAGAAACGACAGAAAATTCATTACTTGAAGCTTCATCACAT
TTGCCACCAAAACGTTTGACTATAAGAAAAAGACCAGCAAAAAAAATTAATTTTACAGCA
ACAAGACAGACAATTACAGAATCAGGAAATGATATAGGTAAAGAAATTGAAAACACATCA
AGCTCAATTTTTACAAGTGAGTCAGATGATGATGAAATTTATGAAACTGAAATTGAAACT
GCGACTGATGAAAAGAAATTCGAAACGACAACAACTGAAAATATTTTAGTGCCAGCAAGT
AAACCAACACGTCGTGTTTTAGTCACAAGAAAGCGAGTCTCAACTGAAAAGCCAGCTGAA
GAAGAGGAACAAAGTGCAGAGCGTGAGCCAGTCATTCCAAGAACAACAACAAGAAAAAGA
GTAATTGCGATAAAAACAAAGACAGGTGTAATTAAACAAACAGTAGAACTTGGTAATTAT
GAGACAACAGAGCCATCGACAGAAGCACCAGTTGATGAGAGTGCAAAAATAGAAGATTCT
GATGTCATTCGCAAGAGAATCAAAGTTTATCGATCAAGAGCCACTACTGAGAGAATTGTT
GAAGAGAGTAGCACTCATAAGCCAATTTATACTCGTACAAAAATTTATAGACGACCAGTA
AAAACAGAAGATGAAACTTCAGAAGCAAGTGTTGACACTTCAACCTCAGAAAGAATTCGA
ACGAGTCCAAGAAGAAGAATCGTAAAAGTCACAAGAAGACCAACACAAGCAGCAGCTATT
GTAACAGAAGAAACAGAAAATGAAAGAGTTGAAAGTGAAGAACCAATAATTGAAAGCTCA
TCAATTGCACCAAAGAAAGTTTTTAAGAAAATTTTAAGAACAAAAACTCCAAGAGTTATT
GCTGATAGACCATTAGAAGAAGATTCATTGGTAATTAAATCAGAAGATGAAATTCAACAA
ATTGATCAAGCAAATGAAGAAAAAGGTGATGAAAATAATGAAGAAAATGTAGAAGTTTCA
TCAGAAGAGCCATCATCACGTCCATTATTAAAATATCCAACAAGACCAAATGGAAGAGTT
CAATCAGTGACAATAAGGAAAAGACCAGCATTTGCACAAACTTCACGAACTAGCACAGTT
CATCCAGCATCAACAAGATTCGGAGGAGCAAATATCACACCAACTCGTACCAAACAAGTC
ACAAGAAAACGTTATAGACCAAGTAGTTCTGTAAGCACAGAAGCTGCAATTGTTGATGAA
ATTGATAATGAAAAGCGAATTGAATTGGGAGAGAAAAGAAAGAAAATTTTCTCAGCAAAG
GGTGGAAATTACAGAAAAACGAGCAGTACAACAAATGCACCAAACATTACACCACATACA
GACACAGAATCTGAAATAAACGAATATGACGACGAAGATACAACTGACATTTCACAAACT
AATATTAATAATGATGGTATTTTGCAGAATAAACCACGATTTTCACTCAATCGTTATAAG
ACATCAACCACACCAAAGCCGACAACACTTCATCATGTCTTTGCAATTGATGAGGATGAA
GAGACACAAAAGGCAAGAAATGGAACATCACAAGCTGAAAATGCTGATGAAGTCATTAAA
AAACTTCAAAAATTGATTGAAATTAACAGAATTGTTGAAGTTTATTCGAAAGAAGAAAAA
TTGAAATTGTTGAAAAATAAAAAATTAAAATCAATTAAAGCTGGTGAATTGACAGTTGAA
AAACCGCCAGTTGTTGATAAATTTGGTGAAATTAGTAGACATGTTGTGATTAAACTTGCA
AAACCAGCAGTAAATGTAACAGTTAATGCAACAACAGAAAGTCCAGAAGAATCAAGATCA
GCTAAGAGCATAATGTTTGCTGAAACAGTCTTTGGCAAAGCAGAGACATCGACAATAAGT
CTTGAAGGATTATTTGAGCGAGAAAAGAAAGAATTGGAACAAAAAGATGAGAAAAAAGTG
GAAATTTCATCAGCATCGCAATTGAATGAGAAAAAACCTATAGTCATAAGCATAGCAAAT
CTAGATCAAGTCATTCTTAGTAAAGTTCAACGAACGTCAAACGGTGATGGAAGCGAGGAC
ACAACAACTGAAAATAGCGTCGATGAAGAAACGACGACTTTAGCACGACCAACTGTTGGT
CCAACTTCAGTGAGAAAAAATCAAGCTAGAGTCACAATTAGGGCTAGAAATCCATTGACA
TCTCGACGAACGACTGATGCCACGACTTTGCCTGCTACGACAACTAGTGTGAAAACTTCA
CCAGTATTTTTGACAACAAATCGTCCTAGAACGACTAGAATTGTTAGAAAAAGAATTACA
AATACTGCCACGACGCCTGGAAAAACTGTGACAGTTTCAACAACTCCACAAACGACAATA
CCTTCCACAACAACCACAAGTTTGTCTAAAACTTCAAGATTTCCTGTCATTGAACAATTT
TCAAATGAATTAGATGACGAAGTTGCAAGCATTTTGCCAGCACTGACTTCAGTAAGACCA
AGAAAAGCACCACAGCCTGTTACAGTCATAAATTCAGATATTGCAACACATCGTGCTTTA
AAAACAATTCCAATAACTCCAATTCAAATTGAAACTTCTTCAATCAAATCAATTCCAACG
ACAACTTTTGATAAAATTCTTGAACATCAATATAAAATTAAAGGACTTGATGTTGATTTT
GAAGAAGAAAAAGTTGAAGAAGAAGAAAAATTAATTGGTGTTTTAGGATCACAAGTAAAA
GTAGTTCTTCATTCTGTCAGTGCTGATCCTGAAAAGACCAAAATAGAATGTTTAGAGCAT
GGAAATTATCCACATCCGTTATCATGCAGCATGTATATTTCATGTGCTCGAAATCGAGGC
TTTCTTGAAGGCTATATTTTCTCATGTGGTGAAGAAATGTCTTTCGATCCAGCAACTGGT
GTATGCGATTGGAATTATAAAATTGGCTGCACTAGAAATAATGTGAAAATTCTTCATAAT
TAA
>g8737.t1 Gene=g8737 Length=2540
MRLIHNGLGILVAFLAASFINNAASEPRVVCYYTNWSVYRPGTAKFNPQNINPYLCTHLI
YAFGGFTKDNQLKPFDKYQDIEQGGYAKFTGLKTYNKELKTMLAIGGWNEGSTRFSPLVA
SADRRAQLVKNTIKFLRQNKFDGLDLDWEYPAFRDGGKAKDRENYAKLVQELREEFDREH
QKTGRPRLLLTMAVPAGFEYIDKGYDVPKLNKYLDWFNLLSYDYHSAYEPAVNHHAPLYP
IEEENEYSFDNDLNINATINYYIKSGADRDKLVLGIPTYGRSYTLFNPESNEIGAPADGP
GDQGDATREKGYLAYYEICQSLKEPDSTWTVVQPNPEALGPYAYSENQWVGYDDEEIVRR
KSEFVVEQKLGGIMFWSIDNDDFRGLCNNKPYPLIEAAKESYLDGLENGVQRKSLSGANK
RKQTTTTTRKPDSKKSGKTTTPAPPTTPTSGSDFKCEEEGFYPHPSDCAKYFWCLEAPGL
GIVAHHFSCPSGLLFNKQADSCDYARNVYCTTKKATTTTEAAPVWTTTVKTTTTTSEKPI
YNKVSSIYKAPSRTTTTTTLSPAIDIDSSDLEQEDPKVIKELIELIKKAGGIEELEKQIS
IQEDNSNSGGKSSATTPATLINKTLVDKFKNRASLFKTRPIFNGASQAERKTVEQKTSST
STQKAIASSSSSSDEKSSSVAKKYNSINRFSRPEPQNTGVDEIPQDDAVLIEKPQYTSIQ
RRRPVKPEVIAENDYNNDSDRSNENTSKLSSVREDEVSKKYTSITRQRKPVVTEVVESEE
DEDEDEIEDEEEEEEITTKSTTVATKAPTKYINLSRRRSTTAAPDEKPQQQEEKIEAVQA
STQSSSSFRRRVTTTVVPTSSAVTQAAVAVTEKTVLTLDNNSDNQILPRFSLDNTLFKRE
QDSLNVNRHLHDDDDDINHIALPTESITENLPIPDTTITITTTTQFPSLSLSSQINNANN
EQVNESATESVTDSSVDDIDLTTIINDNDDEIIENGLSKNNVNIQKTNFFAPRPFARTKP
SPSSTISTSSLSPTRNFPSRKNFNSKSDIIDNETSPTKTIRRRPTVTRTFASTTESSDEE
DEAPRTRPTYSYRPGYRGTARFRYSTSKTGEYDKSRLEGNYQPIDDNRLRSLNLERANNR
PATTATTERTTIEDRTTTRRRPFATRTQAVSKTSTQAPESNEETTTEYRIIEAKNRFNLN
EGERPDRIRFELSAGGKINFGSSFTKAKEKPTLATKEPDSKVKVITGPLDKSPLIESGRL
YKKGHVEEIPIQKEPESVTVQSHSNKLDLSEIPLNKSDIASFVSNDDLKSDETTKRPRLK
PSVVGFKKRIENEEEPSTTASIEEIETTTKTRSRLRPSQSRFAQREQARIEGEVKDELSE
EISSKKILTRNRISQRGRERSDSSEREFVRKSQITPDQNDRSETASPKSFQSRFSGRTRA
QVAKEINSLQESTASEELTTKSYLTRVKASDLFLKNRKSNAVADSENSESQNNFEETSTL
RERFRPNKNRFVTQESSTDFDIQDLVTDRPSFEENEIDFTTIENSEEETTENSLLEASSH
LPPKRLTIRKRPAKKINFTATRQTITESGNDIGKEIENTSSSIFTSESDDDEIYETEIET
ATDEKKFETTTTENILVPASKPTRRVLVTRKRVSTEKPAEEEEQSAEREPVIPRTTTRKR
VIAIKTKTGVIKQTVELGNYETTEPSTEAPVDESAKIEDSDVIRKRIKVYRSRATTERIV
EESSTHKPIYTRTKIYRRPVKTEDETSEASVDTSTSERIRTSPRRRIVKVTRRPTQAAAI
VTEETENERVESEEPIIESSSIAPKKVFKKILRTKTPRVIADRPLEEDSLVIKSEDEIQQ
IDQANEEKGDENNEENVEVSSEEPSSRPLLKYPTRPNGRVQSVTIRKRPAFAQTSRTSTV
HPASTRFGGANITPTRTKQVTRKRYRPSSSVSTEAAIVDEIDNEKRIELGEKRKKIFSAK
GGNYRKTSSTTNAPNITPHTDTESEINEYDDEDTTDISQTNINNDGILQNKPRFSLNRYK
TSTTPKPTTLHHVFAIDEDEETQKARNGTSQAENADEVIKKLQKLIEINRIVEVYSKEEK
LKLLKNKKLKSIKAGELTVEKPPVVDKFGEISRHVVIKLAKPAVNVTVNATTESPEESRS
AKSIMFAETVFGKAETSTISLEGLFEREKKELEQKDEKKVEISSASQLNEKKPIVISIAN
LDQVILSKVQRTSNGDGSEDTTTENSVDEETTTLARPTVGPTSVRKNQARVTIRARNPLT
SRRTTDATTLPATTTSVKTSPVFLTTNRPRTTRIVRKRITNTATTPGKTVTVSTTPQTTI
PSTTTTSLSKTSRFPVIEQFSNELDDEVASILPALTSVRPRKAPQPVTVINSDIATHRAL
KTIPITPIQIETSSIKSIPTTTFDKILEHQYKIKGLDVDFEEEKVEEEEKLIGVLGSQVK
VVLHSVSADPEKTKIECLEHGNYPHPLSCSMYISCARNRGFLEGYIFSCGEEMSFDPATG
VCDWNYKIGCTRNNVKILHN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 24 | g8737.t1 | CDD | cd02872 | GH18_chitolectin_chitotriosidase | 29 | 400 | 0.0 |
| 16 | g8737.t1 | Coils | Coil | Coil | 162 | 182 | - |
| 17 | g8737.t1 | Coils | Coil | Coil | 773 | 793 | - |
| 18 | g8737.t1 | Coils | Coil | Coil | 1854 | 1874 | - |
| 14 | g8737.t1 | Gene3D | G3DSA:3.20.20.80 | Glycosidases | 29 | 400 | 4.0E-150 |
| 15 | g8737.t1 | Gene3D | G3DSA:3.10.50.10 | - | 278 | 352 | 4.0E-150 |
| 12 | g8737.t1 | Gene3D | G3DSA:2.170.140.10 | Antimicrobial Protein | 449 | 520 | 2.2E-9 |
| 13 | g8737.t1 | Gene3D | G3DSA:2.170.140.10 | Antimicrobial Protein | 2469 | 2538 | 2.1E-9 |
| 50 | g8737.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 413 | 452 | - |
| 31 | g8737.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 437 | 452 | - |
| 30 | g8737.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 647 | 755 | - |
| 34 | g8737.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 648 | 695 | - |
| 37 | g8737.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 725 | 755 | - |
| 51 | g8737.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 771 | 852 | - |
| 46 | g8737.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 776 | 796 | - |
| 40 | g8737.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 800 | 819 | - |
| 44 | g8737.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 834 | 852 | - |
| 45 | g8737.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1013 | 1094 | - |
| 42 | g8737.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1018 | 1073 | - |
| 39 | g8737.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1163 | 1184 | - |
| 47 | g8737.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1163 | 1185 | - |
| 48 | g8737.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1330 | 1457 | - |
| 43 | g8737.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1341 | 1365 | - |
| 32 | g8737.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1366 | 1417 | - |
| 33 | g8737.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1418 | 1457 | - |
| 36 | g8737.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1761 | 1780 | - |
| 49 | g8737.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1863 | 1890 | - |
| 35 | g8737.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1982 | 2023 | - |
| 41 | g8737.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1982 | 2002 | - |
| 38 | g8737.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 2230 | 2296 | - |
| 4 | g8737.t1 | PANTHER | PTHR11177 | CHITINASE | 13 | 439 | 4.0E-174 |
| 5 | g8737.t1 | PANTHER | PTHR11177:SF334 | CHITINASE 6, ISOFORM C | 13 | 439 | 4.0E-174 |
| 3 | g8737.t1 | Pfam | PF00704 | Glycosyl hydrolases family 18 | 28 | 381 | 1.8E-91 |
| 1 | g8737.t1 | Pfam | PF01607 | Chitin binding Peritrophin-A domain | 456 | 510 | 1.0E-11 |
| 2 | g8737.t1 | Pfam | PF01607 | Chitin binding Peritrophin-A domain | 2479 | 2530 | 3.3E-7 |
| 20 | g8737.t1 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 25 | - |
| 21 | g8737.t1 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 6 | - |
| 22 | g8737.t1 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 7 | 17 | - |
| 23 | g8737.t1 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 18 | 25 | - |
| 19 | g8737.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 26 | 2540 | - |
| 29 | g8737.t1 | ProSitePatterns | PS01095 | Chitinases family 18 active site. | 141 | 149 | - |
| 53 | g8737.t1 | ProSiteProfiles | PS50940 | Chitin-binding type-2 domain profile. | 453 | 512 | 13.126 |
| 52 | g8737.t1 | ProSiteProfiles | PS50940 | Chitin-binding type-2 domain profile. | 2474 | 2532 | 11.452 |
| 26 | g8737.t1 | SMART | SM00636 | 2g34 | 27 | 381 | 2.9E-144 |
| 27 | g8737.t1 | SMART | SM00494 | chi_10 | 454 | 512 | 3.0E-13 |
| 28 | g8737.t1 | SMART | SM00494 | chi_10 | 2475 | 2532 | 5.1E-11 |
| 9 | g8737.t1 | SUPERFAMILY | SSF51445 | (Trans)glycosidases | 28 | 399 | 9.76E-96 |
| 6 | g8737.t1 | SUPERFAMILY | SSF54556 | Chitinase insertion domain | 279 | 352 | 1.53E-19 |
| 8 | g8737.t1 | SUPERFAMILY | SSF57625 | Invertebrate chitin-binding proteins | 446 | 518 | 1.94E-14 |
| 7 | g8737.t1 | SUPERFAMILY | SSF57625 | Invertebrate chitin-binding proteins | 2471 | 2533 | 1.49E-11 |
| 11 | g8737.t1 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 25 | - |
| 25 | g8737.t1 | SignalP_GRAM_NEGATIVE | SignalP-noTM | SignalP-noTM | 1 | 23 | - |
| 10 | g8737.t1 | SignalP_GRAM_POSITIVE | SignalP-TM | SignalP-TM | 1 | 25 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds | MF |
| GO:0008061 | chitin binding | MF |
| GO:0005975 | carbohydrate metabolic process | BP |
| GO:0005576 | extracellular region | CC |
KEGG
Orthology
- This transcript has been annotated with K01183 (chitinase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
