Gene loci information

Transcript annotation

  • This transcript has been annotated as Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g8739 g8739.t1 TTS g8739.t1 32735853 32735853
chr_2 g8739 g8739.t1 isoform g8739.t1 32735954 32741208
chr_2 g8739 g8739.t1 exon g8739.t1.exon1 32735954 32736126
chr_2 g8739 g8739.t1 cds g8739.t1.CDS1 32735954 32736126
chr_2 g8739 g8739.t1 exon g8739.t1.exon2 32736559 32736732
chr_2 g8739 g8739.t1 cds g8739.t1.CDS2 32736559 32736732
chr_2 g8739 g8739.t1 exon g8739.t1.exon3 32737713 32737992
chr_2 g8739 g8739.t1 cds g8739.t1.CDS3 32737713 32737992
chr_2 g8739 g8739.t1 exon g8739.t1.exon4 32738059 32738234
chr_2 g8739 g8739.t1 cds g8739.t1.CDS4 32738059 32738234
chr_2 g8739 g8739.t1 exon g8739.t1.exon5 32738292 32740321
chr_2 g8739 g8739.t1 cds g8739.t1.CDS5 32738292 32740321
chr_2 g8739 g8739.t1 exon g8739.t1.exon6 32740401 32740438
chr_2 g8739 g8739.t1 cds g8739.t1.CDS6 32740401 32740438
chr_2 g8739 g8739.t1 exon g8739.t1.exon7 32740505 32740789
chr_2 g8739 g8739.t1 cds g8739.t1.CDS7 32740505 32740789
chr_2 g8739 g8739.t1 exon g8739.t1.exon8 32740855 32740905
chr_2 g8739 g8739.t1 cds g8739.t1.CDS8 32740855 32740905
chr_2 g8739 g8739.t1 exon g8739.t1.exon9 32740983 32741096
chr_2 g8739 g8739.t1 cds g8739.t1.CDS9 32740983 32741096
chr_2 g8739 g8739.t1 exon g8739.t1.exon10 32741152 32741208
chr_2 g8739 g8739.t1 cds g8739.t1.CDS10 32741152 32741208
chr_2 g8739 g8739.t1 TSS g8739.t1 32741467 32741467

Sequences

>g8739.t1 Gene=g8739 Length=3378
ATGGAATCAGAAGATACAGAAAATAATAAAAATTCTTCAATGTTTTATTTTGGACAAGAT
GACGAGGAGGATAGCGATGATTATGAGACAGTTAAAGTCATTGTTGGCGTGTGTGCTATG
CAAAAAAAGTCACAAAGCAAACCTATGAAAGAGATATTGGAGAGATTACAGGAATTTGAA
TTTATTAAGATATACATTTTTCCTGAAGAAGTCATACTCAAGGAGGAGATTGAGAACTGG
GCTATAGTTGATTGTTTAATATCATTTCATTCAAAAGGTTTTCCATTAGAAAAAGCCATA
CGTTATGCACAAATGCGAAACTGTTATGTTCTCAATAATTTAAAAATGCAATTTGACATT
CAAGACAGACGCAAAGTTTATGCAATTTTAGAAAGAGAAGGAATTGAAATTCCACGTTAT
GCTGTCCTTGACCGCGATTCAAGCGAGCCCCATGAGCTTGTAGAATCAGAAGACCATGTT
GAAATTAATGGCATTACATTTAATAAGCCGTTTGTAGAGAAGCCAGTATCAGCTGAAGAT
CATAATATATACATTTATTATCCAACGTCGGCTGGTGGAGGCTCACAAAGATTATTTAGA
AAAATTGGCAGTAGATCATCTGTTTATAGTCCAGAGTCGCGTGTAAGAAAAAGTGGATCA
TTTATTTATGAGGATTTTCAAGCTACAGATGGAACTGATGTCAAAGTTTATACTGTTGGT
CCAGATTATGCACATGCTGAAGCACGTAAGAGTCCAGCTTTAGATGGTAAAGTTGAACGT
GATAGTGAAGGAAAAGAGATAAGATATCCAGTGATTTTATCTAATGCTGAAAAACTAATT
GCAAGAAAAGTTTGTCTCGCTTTTAAACAAACTGTTTGTGGTTTTGACTTGCTAAGGGCG
AATGGAAAATCTTATGTTTGTGATGTGAATGGATTTAGTTTTGTTAAAAATTCAAACAAA
TATTATGATGACACTGCGAAAATTTTGGGAAGTTTAATTTTAAGAAATTTAGCCCCAAAA
ATGAACATCCCACTGCCAATGAATTTTAATTTCTTTGATGATCCACCAGTTGTTCCAACT
ACGGTTGGTAAAATGATGGAACTTAGATGTGTTGTTGCTGTCATTCGTCATGGAGATAGA
ACACCAAAGCAAAAAATGAAAGTGGAAGTTCGACATCAAAAGTTTTTTGAAATTTTTGAA
AAATATGATGGCTATAAGAAACTTTCAATTAAATTAAAAAAGCCAAAGCAACTTCAAGAA
ATTTTAGACATTTCTCGTTATTTGTTAAGTGAAATTCAAGCTAATCCTGGATTTGATAAA
GAATTAGAAGAAAAGCAAGCAAAATTAGAGCAACTTAAAAGCGTATTAGAAATGTATGGG
CATTTTAGTGGAATAAATCGAAAAGTTCAGATGAAATATCAGCCATGTGGCAAACCAAAA
GGTTCGAGTAGTGATGAAGACATTCGTAATGATCCATCACTTGTACTTATTCTTAAATGG
GGAGGTGAACTGACTCCTGCTGGTAAAGTTCAATCGGAAGAACTTGGTAGAATGTTTAGA
TGCATGTATCCAGGTTCTGCTCCTCAAAATGATGGCACTAATGGCGATGAAATGGGCTTG
GGCCTTTTGAGACTTCATTCGACATTCAGACATGATCTTAAAATTTATGCCAGTGATGAA
GGTCGAGTGCAAATGACGGCAGCTGCTTTTGCAAAAGGATTATTAGCATTAGAAGGTGAA
TTGACACCAATTTTAGTCCAAATGGTGAAAAGTGCAAATACAAATGGACTTTTAGACAAT
GATTGTGAATCAAGTAAATATCAAACTTTAGCAAAATCCAAATTGCATGAACTTTTACAA
ATTAATAGAGAGTTGACTCAAGAAGAAAGAAATAAAATTAATCCATGTGGTTCTATTAGC
ATTGATCAAGCACTTGAATATGTAAAAAATCCTGTAGAAAGTTGCAGTCATGTTTTAAAT
TTAATCCATAAATTAGTTGAACTTGTTGAAACAAAAAAAGACGATCCAAAGACAAACGAA
AGTGTTTTATATCATGGTGAAACTTGGGACTTAATGCGAAGACGATGGGGAAAAATTGAG
AAAGATTTTTATAATAAAAACAGCTGCGTTTATGACATCTCAAAAATTCCCGAGATTTAT
GATGCTATAAAATATGATTATTGTCACAATCAGCACACACTTCAATTTCCAGAAGCTGAA
GAGCTTTATATTAGTGCTAAAAACCTCGCAGACATTGTAATACCACAAGAATATGGCTTA
ACAGTCGATGAAAAGTTAGCAATTGGCACAGGAATTTGTACACCTTTACTGAGAAAAATT
CGTGCTGATTTACAAAGAAATATTGAAGAACCGGAAGAAAGCGAAAGCGTAAATCGTTTA
AATCCACAATATTCACATGGCGTTTCGTCACCAGGTAGACACGTTCGTACTCGTTTATAT
TTCACATCAGAATCACACGTGCACTCATTACTAACTGTTTTACGTCATGGTGAATTACTG
CCATTAAGCGATTATCAATGGAAACGTGCTATGGACTATGTTTCTATGGTCAGCGAATTA
AATTATATGAGTCAAATCGTTGTGATGTTATATGAAGATCCCACAAAAGATCAAATATCG
GATGAAAGATTTCACGTAGAATTGCATTTTAGTCCAGGTGTGAATTGTTGTGTGCAAAAG
AATCTTCCTAAAGGTCCTGGCTTTAGACCTCATATTCAATCTAAAAATCCTTCAAGTGAA
GATGAAGGACTTGTAAGTAAAATAGATGAGGAATATGTTGATCAACTGTGTAGTATGATG
AATATGAGTGATAAAAAGCGATTATCGAGAATATCAAATCCAATTCATATCGGTCATCAT
ACAGTGTCAGGTCATGAAGCATTAAATTTAGCAAAACGATTGAGTGAAGAACTTGCAACA
CAAAATTCTACACCAACACCAGGCAATAAAACAAGAGCCATAAGTCCTGAAGTTTGTGAA
CCAATATCAAGGTCATTTGAGGGAAAGAAAGGTGCAAGAAGTCAACGCCACAGCTTATGC
CAGATGACTCAATTTAAATTAAATAGTAGACTATCATATCGCAACAGCAGCGCACAAAGC
CTTTTCTCGACAGCTTTAATTTCTGGTTCGAGTTCAGCCCCTAATCTTTCTGAAATGATG
ATGACAACAAATACAACACCGACAGTTCCAGGAATTTTTGGCGTACCTGCAATCAGAAGT
TTAGAGACACTACATAACTCTTTGTCTTTGAAGCAACTCGATACATTTTTAGAAAAAGTA
ACGACAATGACTAATTCTCAGCAGCAAGAAAACAAAAACAATCGAATTGATCGCCAGTTG
TCAGTGACACAAGAATAA

>g8739.t1 Gene=g8739 Length=1125
MESEDTENNKNSSMFYFGQDDEEDSDDYETVKVIVGVCAMQKKSQSKPMKEILERLQEFE
FIKIYIFPEEVILKEEIENWAIVDCLISFHSKGFPLEKAIRYAQMRNCYVLNNLKMQFDI
QDRRKVYAILEREGIEIPRYAVLDRDSSEPHELVESEDHVEINGITFNKPFVEKPVSAED
HNIYIYYPTSAGGGSQRLFRKIGSRSSVYSPESRVRKSGSFIYEDFQATDGTDVKVYTVG
PDYAHAEARKSPALDGKVERDSEGKEIRYPVILSNAEKLIARKVCLAFKQTVCGFDLLRA
NGKSYVCDVNGFSFVKNSNKYYDDTAKILGSLILRNLAPKMNIPLPMNFNFFDDPPVVPT
TVGKMMELRCVVAVIRHGDRTPKQKMKVEVRHQKFFEIFEKYDGYKKLSIKLKKPKQLQE
ILDISRYLLSEIQANPGFDKELEEKQAKLEQLKSVLEMYGHFSGINRKVQMKYQPCGKPK
GSSSDEDIRNDPSLVLILKWGGELTPAGKVQSEELGRMFRCMYPGSAPQNDGTNGDEMGL
GLLRLHSTFRHDLKIYASDEGRVQMTAAAFAKGLLALEGELTPILVQMVKSANTNGLLDN
DCESSKYQTLAKSKLHELLQINRELTQEERNKINPCGSISIDQALEYVKNPVESCSHVLN
LIHKLVELVETKKDDPKTNESVLYHGETWDLMRRRWGKIEKDFYNKNSCVYDISKIPEIY
DAIKYDYCHNQHTLQFPEAEELYISAKNLADIVIPQEYGLTVDEKLAIGTGICTPLLRKI
RADLQRNIEEPEESESVNRLNPQYSHGVSSPGRHVRTRLYFTSESHVHSLLTVLRHGELL
PLSDYQWKRAMDYVSMVSELNYMSQIVVMLYEDPTKDQISDERFHVELHFSPGVNCCVQK
NLPKGPGFRPHIQSKNPSSEDEGLVSKIDEEYVDQLCSMMNMSDKKRLSRISNPIHIGHH
TVSGHEALNLAKRLSEELATQNSTPTPGNKTRAISPEVCEPISRSFEGKKGARSQRHSLC
QMTQFKLNSRLSYRNSSAQSLFSTALISGSSSAPNLSEMMMTTNTTPTVPGIFGVPAIRS
LETLHNSLSLKQLDTFLEKVTTMTNSQQQENKNNRIDRQLSVTQE

Protein features from InterProScan

Transcript Database ID Name Start End E.value
12 g8739.t1 CDD cd07061 HP_HAP_like 502 599 3.35205E-17
11 g8739.t1 Gene3D G3DSA:3.40.50.11950 - 35 339 1.9E-155
10 g8739.t1 Gene3D G3DSA:3.30.470.100 - 114 313 1.9E-155
8 g8739.t1 MobiDBLite mobidb-lite consensus disorder prediction 1 24 -
9 g8739.t1 MobiDBLite mobidb-lite consensus disorder prediction 1104 1125 -
3 g8739.t1 PANTHER PTHR12750 DIPHOSPHOINOSITOL PENTAKISPHOSPHATE KINASE 19 1118 0.0
4 g8739.t1 PANTHER PTHR12750:SF11 INOSITOL HEXAKISPHOSPHATE AND DIPHOSPHOINOSITOL-PENTAKISPHOSPHATE KINASE 1 19 1118 0.0
1 g8739.t1 Pfam PF18086 Diphosphoinositol pentakisphosphate kinase 2 N-terminal domain 33 122 1.1E-37
2 g8739.t1 Pfam PF00328 Histidine phosphatase superfamily (branch 2) 367 891 1.1E-122
7 g8739.t1 ProSitePatterns PS00616 Histidine acid phosphatases phosphohistidine signature. 368 382 -
6 g8739.t1 SUPERFAMILY SSF56059 Glutathione synthetase ATP-binding domain-like 125 313 2.79E-5
5 g8739.t1 SUPERFAMILY SSF53254 Phosphoglycerate mutase-like 319 891 3.4E-53

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0000829 inositol heptakisphosphate kinase activity MF

KEGG

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values