General information for g8739.t6
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase.
Parent gene
- The parent gene g8739 is located on chr_2: 32739772..32741208 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8739 | g8739.t6 | TTS | g8739.t6 | 32735853 | 32735853 |
| chr_2 | g8739 | g8739.t6 | isoform | g8739.t6 | 32735954 | 32741208 |
| chr_2 | g8739 | g8739.t6 | exon | g8739.t6.exon1 | 32735954 | 32736126 |
| chr_2 | g8739 | g8739.t6 | exon | g8739.t6.exon2 | 32736559 | 32736674 |
| chr_2 | g8739 | g8739.t6 | cds | g8739.t6.CDS1 | 32736625 | 32736674 |
| chr_2 | g8739 | g8739.t6 | exon | g8739.t6.exon3 | 32740101 | 32740321 |
| chr_2 | g8739 | g8739.t6 | cds | g8739.t6.CDS2 | 32740101 | 32740321 |
| chr_2 | g8739 | g8739.t6 | exon | g8739.t6.exon4 | 32740401 | 32740438 |
| chr_2 | g8739 | g8739.t6 | cds | g8739.t6.CDS3 | 32740401 | 32740438 |
| chr_2 | g8739 | g8739.t6 | exon | g8739.t6.exon5 | 32740505 | 32740789 |
| chr_2 | g8739 | g8739.t6 | cds | g8739.t6.CDS4 | 32740505 | 32740789 |
| chr_2 | g8739 | g8739.t6 | exon | g8739.t6.exon6 | 32740855 | 32740905 |
| chr_2 | g8739 | g8739.t6 | cds | g8739.t6.CDS5 | 32740855 | 32740905 |
| chr_2 | g8739 | g8739.t6 | exon | g8739.t6.exon7 | 32740983 | 32741096 |
| chr_2 | g8739 | g8739.t6 | cds | g8739.t6.CDS6 | 32740983 | 32741096 |
| chr_2 | g8739 | g8739.t6 | exon | g8739.t6.exon8 | 32741152 | 32741208 |
| chr_2 | g8739 | g8739.t6 | cds | g8739.t6.CDS7 | 32741152 | 32741208 |
| chr_2 | g8739 | g8739.t6 | TSS | g8739.t6 | 32741467 | 32741467 |
Sequences
>g8739.t6 Gene=g8739 Length=1055
ATGGAATCAGAAGATACAGAAAATAATAAAAATTCTTCAATGTTTTATTTTGGACAAGAT
GACGAGGAGGATAGCGATGATTATGAGACAGTTAAAGTCATTGTTGGCGTGTGTGCTATG
CAAAAAAAGTCACAAAGCAAACCTATGAAAGAGATATTGGAGAGATTACAGGAATTTGAA
TTTATTAAGATATACATTTTTCCTGAAGAAGTCATACTCAAGGAGGAGATTGAGAACTGG
GCTATAGTTGATTGTTTAATATCATTTCATTCAAAAGGTTTTCCATTAGAAAAAGCCATA
CGTTATGCACAAATGCGAAACTGTTATGTTCTCAATAATTTAAAAATGCAATTTGACATT
CAAGACAGACGCAAAGTTTATGCAATTTTAGAAAGAGAAGGAATTGAAATTCCACGTTAT
GCTGTCCTTGACCGCGATTCAAGCGAGCCCCATGAGCTTGTAGAATCAGAAGACCATGTT
GAAATTAATGGCATTACATTTAATAAGCCGTTTGTAGAGAAGCCAGTATCAGCTGAAGAT
CATAATATATACATTTATTATCCAACGTCGGCTGGTGGAGGCTCACAAAGATTATTTAGA
AAAATTGGCAGTAGATCATCTGTTTATAGTCCAGAGTCGCGTGTAAGAAAAAGTGGATCA
TTTATTTATGAGGATTTTCAAGCTACAGATGGAACTGATGTCAAAGTTTATACTGTTGGT
CCAGATTATGCACATGCTGAAGCACGTAAGAGTCCAGCTTTAGATGACTATCATATCGCA
ACAGCAGCGCACAAAGCCTTTTCTCGACAGCTTTAATTTCTGGTTCGAGTTCAGCCCCTA
ATCTTTCTGAAATGATGATGACAACAAATACAACACCGACAGTTCCAGGAATTTTTGGCG
TACCTGCAATCAGAAGTTTAGAGACACTACATAACTCTTTGTCTTTGAAGCAACTCGATA
CATTTTTAGAAAAAGTAACGACAATGACTAATTCTCAGCAGCAAGAAAACAAAAACAATC
GAATTGATCGCCAGTTGTCAGTGACACAAGAATAA
>g8739.t6 Gene=g8739 Length=271
MESEDTENNKNSSMFYFGQDDEEDSDDYETVKVIVGVCAMQKKSQSKPMKEILERLQEFE
FIKIYIFPEEVILKEEIENWAIVDCLISFHSKGFPLEKAIRYAQMRNCYVLNNLKMQFDI
QDRRKVYAILEREGIEIPRYAVLDRDSSEPHELVESEDHVEINGITFNKPFVEKPVSAED
HNIYIYYPTSAGGGSQRLFRKIGSRSSVYSPESRVRKSGSFIYEDFQATDGTDVKVYTVG
PDYAHAEARKSPALDDYHIATAAHKAFSRQL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g8739.t6 | Gene3D | G3DSA:3.30.470.100 | - | 114 | 268 | 1.5E-65 |
| 4 | g8739.t6 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - |
| 2 | g8739.t6 | PANTHER | PTHR12750 | DIPHOSPHOINOSITOL PENTAKISPHOSPHATE KINASE | 19 | 255 | 3.6E-127 |
| 3 | g8739.t6 | PANTHER | PTHR12750:SF11 | INOSITOL HEXAKISPHOSPHATE AND DIPHOSPHOINOSITOL-PENTAKISPHOSPHATE KINASE 1 | 19 | 255 | 3.6E-127 |
| 1 | g8739.t6 | Pfam | PF18086 | Diphosphoinositol pentakisphosphate kinase 2 N-terminal domain | 33 | 122 | 1.2E-38 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0000829 | inositol heptakisphosphate kinase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed