General information for g874.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g874 is located on chr_3: 6611229..6611789 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g874 | g874.t1 | TSS | g874.t1 | 6610956 | 6610956 |
| chr_3 | g874 | g874.t1 | isoform | g874.t1 | 6611229 | 6611789 |
| chr_3 | g874 | g874.t1 | exon | g874.t1.exon1 | 6611229 | 6611789 |
| chr_3 | g874 | g874.t1 | cds | g874.t1.CDS1 | 6611229 | 6611789 |
| chr_3 | g874 | g874.t1 | TTS | g874.t1 | 6612488 | 6612488 |
Sequences
>g874.t1 Gene=g874 Length=561
ATGAGTCAACAGATAAATTCCACATTTGAAATAACAAATTGGCCTTTTTTAAAGTACGCA
TACAACAATATTATAAGAGATCAAAATATTAATGAAAATGCAACTTTAAAAATAATTGGC
AATCATTTAAATGGCTATTCAAATAAAGATGTCAATGCAATTTCTTTTATTGGCTGTAAA
TTTTCAAAATTTCCTCAACAATTAACTGCAGTTTTTCCCAATATTGAAGCTATTTATATT
TATCAGTCTAATATGCCATACATTCTTCGAGAAGATCTAAAAGAATACAAGAAAATTAAA
CAATTTTATATTGAAGAAAATAAAATAACTTTTTTGCAGCAAGACTTGTTGGCGGATATG
AAATCATTAGAAATATTTTATGTTCATGAAAACAATTTGTTATATGTTGAGCCAGAAATT
TTTGATAATTTAGGAAACATACGATATATTAACTTTGATCAATGCAGCATTCACAATTTT
ACATTCAATGCTGATGGGTCAAAAGACTGCAAAACATTAGAAGAAGTGAAGAAAAAACTT
CAAGAGAAACATCAAAATTGA
>g874.t1 Gene=g874 Length=186
MSQQINSTFEITNWPFLKYAYNNIIRDQNINENATLKIIGNHLNGYSNKDVNAISFIGCK
FSKFPQQLTAVFPNIEAIYIYQSNMPYILREDLKEYKKIKQFYIEENKITFLQQDLLADM
KSLEIFYVHENNLLYVEPEIFDNLGNIRYINFDQCSIHNFTFNADGSKDCKTLEEVKKKL
QEKHQN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g874.t1 | Coils | Coil | Coil | 163 | 183 | - |
| 3 | g874.t1 | Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 12 | 177 | 4.9E-16 |
| 1 | g874.t1 | Pfam | PF13855 | Leucine rich repeat | 100 | 156 | 1.3E-7 |
| 2 | g874.t1 | SUPERFAMILY | SSF52058 | L domain-like | 50 | 163 | 1.26E-13 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
