General information for g8740.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g8740 is located on chr_2: 32741837..32742578 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8740 | g8740.t2 | isoform | g8740.t2 | 32741773 | 32742578 |
| chr_2 | g8740 | g8740.t2 | exon | g8740.t2.exon1 | 32741773 | 32742578 |
| chr_2 | g8740 | g8740.t2 | TTS | g8740.t2 | 32741794 | 32741794 |
| chr_2 | g8740 | g8740.t2 | cds | g8740.t2.CDS1 | 32741837 | 32742199 |
| chr_2 | g8740 | g8740.t2 | TSS | g8740.t2 | 32742681 | 32742681 |
Sequences
>g8740.t2 Gene=g8740 Length=806
ATGGATAAGTGGACAGGAAAAGTAGCAGTAATTACCGGTGGCTCATCAGGCATGGGTGCT
GCAATTCTTTCATTATTCATCAAAAATGGTTTGAAAGTCATCAATCATCAAAGACATAAA
TGTCACTGAAAATAGCTCAAAAGTTGATGAGAATTTTAAAGTTTTCAATCGCAAATGTGA
TGTTGCAAATTTGACATCAATTAAAGAAAATTTCAATTGGATTGAGGAAAATTTTGGTGT
TGTTCATATTCTTGTCAATAATGCTGGAATTTTGAGAAGTGGAAAAGTTCTTGATGAAAA
TTCAATTGAAATTTTGAATAAATTGATTGATGTAAATTTTACTGCTGTTGTCCACTGCAC
TCGTGAAGCTGTAAAATTAATGAAAAAGTCAGAAGACTATTGCATGATTATCAACATTTG
CTCAATTGCTGGCCATAAAATTCCATTTCCAAATGATTTTAACATTTATCCAGCTACAAA
ATTTGCTGTTAAAGCTTTTTCTGAAATTGTAAGACAAGAATTAGTTGTTGAAGAATGTGA
CAAAATTCGTGTGACTAATTTAAGCCCTGGATCAGTTAGAACTAATATTTTAGATAACTC
TGGTTTTCCTCAATTCGATGAATTTATTGAACAATATAAATTGAAATTTATTGAACCAGA
AGACATTGCTGAAGCTGTTTGTTACATTTTAAGCACTCAAATTAATGTCAATGTTAGTGA
ATTGACAATTATGAGTGCTTGAGAAATTGTATTTAGGCAAAATAAATTTTATTCAAAATT
AAAAATGAAATTGAATGTCATAAAGA
>g8740.t2 Gene=g8740 Length=120
MKKSEDYCMIINICSIAGHKIPFPNDFNIYPATKFAVKAFSEIVRQELVVEECDKIRVTN
LSPGSVRTNILDNSGFPQFDEFIEQYKLKFIEPEDIAEAVCYILSTQINVNVSELTIMSA
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g8740.t2 | Gene3D | G3DSA:3.40.50.720 | - | 1 | 114 | 1.4E-16 |
| 2 | g8740.t2 | PANTHER | PTHR43115 | DEHYDROGENASE/REDUCTASE SDR FAMILY MEMBER 11 | 10 | 117 | 9.7E-26 |
| 4 | g8740.t2 | PRINTS | PR00081 | Glucose/ribitol dehydrogenase family signature | 2 | 18 | 5.4E-11 |
| 3 | g8740.t2 | PRINTS | PR00081 | Glucose/ribitol dehydrogenase family signature | 30 | 49 | 5.4E-11 |
| 5 | g8740.t2 | PRINTS | PR00081 | Glucose/ribitol dehydrogenase family signature | 54 | 71 | 5.4E-11 |
| 6 | g8740.t2 | PRINTS | PR00081 | Glucose/ribitol dehydrogenase family signature | 86 | 106 | 5.4E-11 |
| 1 | g8740.t2 | Pfam | PF00106 | short chain dehydrogenase | 6 | 73 | 4.4E-10 |
| 8 | g8740.t2 | ProSitePatterns | PS00061 | Short-chain dehydrogenases/reductases family signature. | 17 | 45 | - |
| 7 | g8740.t2 | SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains | 7 | 107 | 1.35E-15 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0055114 | NA | NA |
| GO:0016491 | oxidoreductase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
