General information for g8743.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Flavin reductase (NADPH).
Parent gene
- The parent gene g8743 is located on chr_2: 32748068..32748807 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8743 | g8743.t1 | TTS | g8743.t1 | 32747823 | 32747823 |
| chr_2 | g8743 | g8743.t1 | isoform | g8743.t1 | 32748068 | 32748807 |
| chr_2 | g8743 | g8743.t1 | exon | g8743.t1.exon1 | 32748068 | 32748597 |
| chr_2 | g8743 | g8743.t1 | cds | g8743.t1.CDS1 | 32748068 | 32748597 |
| chr_2 | g8743 | g8743.t1 | exon | g8743.t1.exon2 | 32748664 | 32748696 |
| chr_2 | g8743 | g8743.t1 | cds | g8743.t1.CDS2 | 32748664 | 32748696 |
| chr_2 | g8743 | g8743.t1 | exon | g8743.t1.exon3 | 32748768 | 32748807 |
| chr_2 | g8743 | g8743.t1 | cds | g8743.t1.CDS3 | 32748768 | 32748807 |
| chr_2 | g8743 | g8743.t1 | TSS | g8743.t1 | 32748946 | 32748946 |
Sequences
>g8743.t1 Gene=g8743 Length=603
ATGAATAAATTAGCAATTTTTGGTGGAACCGGCATGACAGGTCGTTGTGCAGTAAACTAT
GCACTCGAAAAAGGCAAACATGTTCGTTTACTTGTACGCGATGAGTCGGCAATTCCAGAG
GAATTCAAGGGCAAGGTTGAAATTATCAATGGCAATGTTTTAAACCAAGCAGATGTTGAC
AAGACTGTTGAAGGTGTTGATGGAGTTGTGATAATTTTAGGTACTAGAGGAAGTACTGAG
CCAACTACAATGATGTCCGAAGGAACAAGAAATATTATTGAAGCAATGAAAAAATTTGGT
TTGAAAAAATTCTCAGCTTGTTTAAGTTCTTTTCTATTTATGCCAGTGGAAAATGTTCCA
AAAGTTTTTCATGAATTAAATGCTGATCATCAACGAATGTTGGATGTAATCAAAGCATCT
GGTTTGGAATACAGAGCTGTTTTGCCGCCTCATATCGCGGATGAACCTTCTGGAAATTTT
AAAATTCTCTATAATGAGAGAGTTGGCCGAACAATCTCAAAATATGACCTTGGAAAATTC
TTTATCGACTGTTTGGAGAATGACGAGCATAGTGGAAAGGTCATCGGAATTGCTACAGTC
TAA
>g8743.t1 Gene=g8743 Length=200
MNKLAIFGGTGMTGRCAVNYALEKGKHVRLLVRDESAIPEEFKGKVEIINGNVLNQADVD
KTVEGVDGVVIILGTRGSTEPTTMMSEGTRNIIEAMKKFGLKKFSACLSSFLFMPVENVP
KVFHELNADHQRMLDVIKASGLEYRAVLPPHIADEPSGNFKILYNERVGRTISKYDLGKF
FIDCLENDEHSGKVIGIATV
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g8743.t1 | CDD | cd05244 | BVR-B_like_SDR_a | 3 | 197 | 0 |
| 5 | g8743.t1 | Gene3D | G3DSA:3.40.50.720 | - | 1 | 199 | 0 |
| 2 | g8743.t1 | PANTHER | PTHR43355 | FLAVIN REDUCTASE (NADPH) | 1 | 198 | 0 |
| 3 | g8743.t1 | PANTHER | PTHR43355:SF2 | FLAVIN REDUCTASE (NADPH) | 1 | 198 | 0 |
| 1 | g8743.t1 | Pfam | PF13460 | NAD(P)H-binding | 8 | 188 | 0 |
| 4 | g8743.t1 | SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains | 1 | 197 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
