General information for g8743.t17
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Flavin reductase (NADPH).
Parent gene
- The parent gene g8743 is located on chr_2: 32748068..32748807 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8743 | g8743.t17 | TTS | g8743.t17 | 32747823 | 32747823 |
| chr_2 | g8743 | g8743.t17 | isoform | g8743.t17 | 32748068 | 32748807 |
| chr_2 | g8743 | g8743.t17 | exon | g8743.t17.exon1 | 32748068 | 32748597 |
| chr_2 | g8743 | g8743.t17 | cds | g8743.t17.CDS1 | 32748068 | 32748421 |
| chr_2 | g8743 | g8743.t17 | exon | g8743.t17.exon2 | 32748746 | 32748807 |
| chr_2 | g8743 | g8743.t17 | TSS | g8743.t17 | 32748946 | 32748946 |
Sequences
>g8743.t17 Gene=g8743 Length=592
ATGAATAAATTAGCAATTTTTGGTGGAACCGGCATGACAGGTTGGTCAAAAATAAAAATA
TTGCAAACATGTTCGTTTACTTGTACGCGATGAGTCGGCAATTCCAGAGGAATTCAAGGG
CAAGGTTGAAATTATCAATGGCAATGTTTTAAACCAAGCAGATGTTGACAAGACTGTTGA
AGGTGTTGATGGAGTTGTGATAATTTTAGGTACTAGAGGAAGTACTGAGCCAACTACAAT
GATGTCCGAAGGAACAAGAAATATTATTGAAGCAATGAAAAAATTTGGTTTGAAAAAATT
CTCAGCTTGTTTAAGTTCTTTTCTATTTATGCCAGTGGAAAATGTTCCAAAAGTTTTTCA
TGAATTAAATGCTGATCATCAACGAATGTTGGATGTAATCAAAGCATCTGGTTTGGAATA
CAGAGCTGTTTTGCCGCCTCATATCGCGGATGAACCTTCTGGAAATTTTAAAATTCTCTA
TAATGAGAGAGTTGGCCGAACAATCTCAAAATATGACCTTGGAAAATTCTTTATCGACTG
TTTGGAGAATGACGAGCATAGTGGAAAGGTCATCGGAATTGCTACAGTCTAA
>g8743.t17 Gene=g8743 Length=117
MMSEGTRNIIEAMKKFGLKKFSACLSSFLFMPVENVPKVFHELNADHQRMLDVIKASGLE
YRAVLPPHIADEPSGNFKILYNERVGRTISKYDLGKFFIDCLENDEHSGKVIGIATV
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g8743.t17 | Gene3D | G3DSA:3.40.50.720 | - | 1 | 116 | 2.4E-15 |
| 2 | g8743.t17 | PANTHER | PTHR43355 | FLAVIN REDUCTASE (NADPH) | 1 | 115 | 4.4E-22 |
| 3 | g8743.t17 | PANTHER | PTHR43355:SF2 | FLAVIN REDUCTASE (NADPH) | 1 | 115 | 4.4E-22 |
| 1 | g8743.t17 | Pfam | PF13460 | NAD(P)H-binding | 3 | 105 | 1.4E-12 |
| 7 | g8743.t17 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 35 | - |
| 8 | g8743.t17 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 20 | - |
| 9 | g8743.t17 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 21 | 31 | - |
| 10 | g8743.t17 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 32 | 35 | - |
| 6 | g8743.t17 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 36 | 117 | - |
| 4 | g8743.t17 | SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains | 3 | 114 | 6.49E-12 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed