General information for g8743.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Flavin reductase (NADPH).
Parent gene
- The parent gene g8743 is located on chr_2: 32748068..32748807 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8743 | g8743.t4 | TTS | g8743.t4 | 32747823 | 32747823 |
| chr_2 | g8743 | g8743.t4 | isoform | g8743.t4 | 32748068 | 32748807 |
| chr_2 | g8743 | g8743.t4 | exon | g8743.t4.exon1 | 32748068 | 32748597 |
| chr_2 | g8743 | g8743.t4 | cds | g8743.t4.CDS1 | 32748068 | 32748597 |
| chr_2 | g8743 | g8743.t4 | exon | g8743.t4.exon2 | 32748664 | 32748717 |
| chr_2 | g8743 | g8743.t4 | cds | g8743.t4.CDS2 | 32748664 | 32748717 |
| chr_2 | g8743 | g8743.t4 | exon | g8743.t4.exon3 | 32748768 | 32748807 |
| chr_2 | g8743 | g8743.t4 | cds | g8743.t4.CDS3 | 32748768 | 32748807 |
| chr_2 | g8743 | g8743.t4 | TSS | g8743.t4 | 32748946 | 32748946 |
Sequences
>g8743.t4 Gene=g8743 Length=624
ATGAATAAATTAGCAATTTTTGGTGGAACCGGCATGACAGAAAGTACTTTTTCTGACACA
GGTCGTTGTGCAGTAAACTATGCACTCGAAAAAGGCAAACATGTTCGTTTACTTGTACGC
GATGAGTCGGCAATTCCAGAGGAATTCAAGGGCAAGGTTGAAATTATCAATGGCAATGTT
TTAAACCAAGCAGATGTTGACAAGACTGTTGAAGGTGTTGATGGAGTTGTGATAATTTTA
GGTACTAGAGGAAGTACTGAGCCAACTACAATGATGTCCGAAGGAACAAGAAATATTATT
GAAGCAATGAAAAAATTTGGTTTGAAAAAATTCTCAGCTTGTTTAAGTTCTTTTCTATTT
ATGCCAGTGGAAAATGTTCCAAAAGTTTTTCATGAATTAAATGCTGATCATCAACGAATG
TTGGATGTAATCAAAGCATCTGGTTTGGAATACAGAGCTGTTTTGCCGCCTCATATCGCG
GATGAACCTTCTGGAAATTTTAAAATTCTCTATAATGAGAGAGTTGGCCGAACAATCTCA
AAATATGACCTTGGAAAATTCTTTATCGACTGTTTGGAGAATGACGAGCATAGTGGAAAG
GTCATCGGAATTGCTACAGTCTAA
>g8743.t4 Gene=g8743 Length=207
MNKLAIFGGTGMTESTFSDTGRCAVNYALEKGKHVRLLVRDESAIPEEFKGKVEIINGNV
LNQADVDKTVEGVDGVVIILGTRGSTEPTTMMSEGTRNIIEAMKKFGLKKFSACLSSFLF
MPVENVPKVFHELNADHQRMLDVIKASGLEYRAVLPPHIADEPSGNFKILYNERVGRTIS
KYDLGKFFIDCLENDEHSGKVIGIATV
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g8743.t4 | CDD | cd05244 | BVR-B_like_SDR_a | 3 | 204 | 0 |
| 5 | g8743.t4 | Gene3D | G3DSA:3.40.50.720 | - | 1 | 206 | 0 |
| 2 | g8743.t4 | PANTHER | PTHR43355 | FLAVIN REDUCTASE (NADPH) | 1 | 205 | 0 |
| 3 | g8743.t4 | PANTHER | PTHR43355:SF2 | FLAVIN REDUCTASE (NADPH) | 1 | 205 | 0 |
| 1 | g8743.t4 | Pfam | PF13460 | NAD(P)H-binding | 20 | 195 | 0 |
| 4 | g8743.t4 | SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains | 1 | 204 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K05901 (biliverdin reductase / flavin reductase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
