General information for g8743.t9
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Flavin reductase (NADPH).
Parent gene
- The parent gene g8743 is located on chr_2: 32748068..32748807 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8743 | g8743.t9 | TTS | g8743.t9 | 32747823 | 32747823 |
| chr_2 | g8743 | g8743.t9 | isoform | g8743.t9 | 32748068 | 32748807 |
| chr_2 | g8743 | g8743.t9 | exon | g8743.t9.exon1 | 32748068 | 32748597 |
| chr_2 | g8743 | g8743.t9 | cds | g8743.t9.CDS1 | 32748068 | 32748597 |
| chr_2 | g8743 | g8743.t9 | exon | g8743.t9.exon2 | 32748750 | 32748807 |
| chr_2 | g8743 | g8743.t9 | cds | g8743.t9.CDS2 | 32748750 | 32748807 |
| chr_2 | g8743 | g8743.t9 | TSS | g8743.t9 | 32748946 | 32748946 |
Sequences
>g8743.t9 Gene=g8743 Length=588
ATGAATAAATTAGCAATTTTTGGTGGAACCGGCATGACAGGTTGGTCAAAAATAAAAAGC
AAACATGTTCGTTTACTTGTACGCGATGAGTCGGCAATTCCAGAGGAATTCAAGGGCAAG
GTTGAAATTATCAATGGCAATGTTTTAAACCAAGCAGATGTTGACAAGACTGTTGAAGGT
GTTGATGGAGTTGTGATAATTTTAGGTACTAGAGGAAGTACTGAGCCAACTACAATGATG
TCCGAAGGAACAAGAAATATTATTGAAGCAATGAAAAAATTTGGTTTGAAAAAATTCTCA
GCTTGTTTAAGTTCTTTTCTATTTATGCCAGTGGAAAATGTTCCAAAAGTTTTTCATGAA
TTAAATGCTGATCATCAACGAATGTTGGATGTAATCAAAGCATCTGGTTTGGAATACAGA
GCTGTTTTGCCGCCTCATATCGCGGATGAACCTTCTGGAAATTTTAAAATTCTCTATAAT
GAGAGAGTTGGCCGAACAATCTCAAAATATGACCTTGGAAAATTCTTTATCGACTGTTTG
GAGAATGACGAGCATAGTGGAAAGGTCATCGGAATTGCTACAGTCTAA
>g8743.t9 Gene=g8743 Length=195
MNKLAIFGGTGMTGWSKIKSKHVRLLVRDESAIPEEFKGKVEIINGNVLNQADVDKTVEG
VDGVVIILGTRGSTEPTTMMSEGTRNIIEAMKKFGLKKFSACLSSFLFMPVENVPKVFHE
LNADHQRMLDVIKASGLEYRAVLPPHIADEPSGNFKILYNERVGRTISKYDLGKFFIDCL
ENDEHSGKVIGIATV
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g8743.t9 | CDD | cd05244 | BVR-B_like_SDR_a | 3 | 192 | 2.16946E-55 |
| 6 | g8743.t9 | Coils | Coil | Coil | 194 | 195 | - |
| 5 | g8743.t9 | Gene3D | G3DSA:3.40.50.720 | - | 1 | 194 | 1.7E-33 |
| 2 | g8743.t9 | PANTHER | PTHR43355 | FLAVIN REDUCTASE (NADPH) | 1 | 193 | 6.8E-47 |
| 3 | g8743.t9 | PANTHER | PTHR43355:SF2 | FLAVIN REDUCTASE (NADPH) | 1 | 193 | 6.8E-47 |
| 1 | g8743.t9 | Pfam | PF13460 | NAD(P)H-binding | 20 | 183 | 5.6E-26 |
| 4 | g8743.t9 | SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains | 1 | 192 | 2.32E-29 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K05901 (biliverdin reductase / flavin reductase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed