Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative ER degradation-enhancing alpha-mannosidase-like protein 2.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g8744 g8744.t2 TSS g8744.t2 32749889 32749889
chr_2 g8744 g8744.t2 isoform g8744.t2 32749955 32750639
chr_2 g8744 g8744.t2 exon g8744.t2.exon1 32749955 32750040
chr_2 g8744 g8744.t2 cds g8744.t2.CDS1 32749955 32750040
chr_2 g8744 g8744.t2 exon g8744.t2.exon2 32750098 32750352
chr_2 g8744 g8744.t2 cds g8744.t2.CDS2 32750098 32750352
chr_2 g8744 g8744.t2 exon g8744.t2.exon3 32750409 32750568
chr_2 g8744 g8744.t2 cds g8744.t2.CDS3 32750409 32750568
chr_2 g8744 g8744.t2 exon g8744.t2.exon4 32750624 32750639
chr_2 g8744 g8744.t2 cds g8744.t2.CDS4 32750624 32750638
chr_2 g8744 g8744.t2 TTS g8744.t2 NA NA

Sequences

>g8744.t2 Gene=g8744 Length=517
ATGAAGTTATTCTTAATTTTAACATTAGCATTCAATTTAACAAATTCACTTCGACAATAT
AAGAAGGAAGATGTTTTAAGATTAAGAGAACAAGCTAGAAAAATGTTTTATCATGGATAT
GACAACTATCTTAAATATGCATCAAAATATGATGAATTAAAACCTCTGAGTTGTACAGGA
GTAAATACATGGAGCAGTTCTTCTTTAACATTAATTGACTCTTTAGACACATTAATTGTA
ATGGGCAATTATTCTGAATTTAAAAGAGTCTCATCATATATAGTTGAAAATTTTGATTTT
GATAAAGACATTAATGTGTCAGTTTTTGAAGTAAATATTAGGATTGTTGGCGGTCTATTA
TCAGCACACTTGCTTTCACATAAAGCAGGAATAAATTATGTAGGATTTCCTTGCAATGGA
CCACTACTTCAACTTGCGGAAAAAGTTGCAAGAAAATTGTTGCCAGCATTCGATACAAAG
ACTGGAATGCCTTATGGCACGGTAAATTTAAAATATG

>g8744.t2 Gene=g8744 Length=172
MKLFLILTLAFNLTNSLRQYKKEDVLRLREQARKMFYHGYDNYLKYASKYDELKPLSCTG
VNTWSSSSLTLIDSLDTLIVMGNYSEFKRVSSYIVENFDFDKDINVSVFEVNIRIVGGLL
SAHLLSHKAGINYVGFPCNGPLLQLAEKVARKLLPAFDTKTGMPYGTVNLKY

Protein features from InterProScan

Transcript Database ID Name Start End E.value
10 g8744.t2 Gene3D G3DSA:1.50.10.10 - 17 172 3.7E-52
2 g8744.t2 PANTHER PTHR45679 ER DEGRADATION-ENHANCING ALPHA-MANNOSIDASE-LIKE PROTEIN 2 14 172 2.8E-70
3 g8744.t2 PANTHER PTHR45679:SF6 ER DEGRADATION-ENHANCING ALPHA-MANNOSIDASE-LIKE PROTEIN 2 14 172 2.8E-70
4 g8744.t2 PRINTS PR00747 Glycosyl hydrolase family 47 signature 35 55 2.7E-33
6 g8744.t2 PRINTS PR00747 Glycosyl hydrolase family 47 signature 68 82 2.7E-33
5 g8744.t2 PRINTS PR00747 Glycosyl hydrolase family 47 signature 105 123 2.7E-33
7 g8744.t2 PRINTS PR00747 Glycosyl hydrolase family 47 signature 155 172 2.7E-33
1 g8744.t2 Pfam PF01532 Glycosyl hydrolase family 47 35 171 5.7E-42
12 g8744.t2 Phobius SIGNAL_PEPTIDE Signal peptide region 1 16 -
13 g8744.t2 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide. 1 2 -
14 g8744.t2 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide. 3 11 -
15 g8744.t2 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide. 12 16 -
11 g8744.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 17 172 -
8 g8744.t2 SUPERFAMILY SSF48225 Seven-hairpin glycosidases 23 171 3.27E-52
9 g8744.t2 SignalP_EUK SignalP-noTM SignalP-noTM 1 16 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016020 membrane CC
GO:0005509 calcium ion binding MF
GO:0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity MF
GO:0005975 carbohydrate metabolic process BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values