Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative phosphatidate phosphatase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g8749 g8749.t12 TTS g8749.t12 32790268 32790268
chr_2 g8749 g8749.t12 isoform g8749.t12 32790384 32792993
chr_2 g8749 g8749.t12 exon g8749.t12.exon1 32790384 32790538
chr_2 g8749 g8749.t12 cds g8749.t12.CDS1 32790384 32790538
chr_2 g8749 g8749.t12 exon g8749.t12.exon2 32790599 32790928
chr_2 g8749 g8749.t12 cds g8749.t12.CDS2 32790599 32790928
chr_2 g8749 g8749.t12 exon g8749.t12.exon3 32791015 32791189
chr_2 g8749 g8749.t12 cds g8749.t12.CDS3 32791015 32791189
chr_2 g8749 g8749.t12 exon g8749.t12.exon4 32791246 32791397
chr_2 g8749 g8749.t12 cds g8749.t12.CDS4 32791246 32791397
chr_2 g8749 g8749.t12 exon g8749.t12.exon5 32791460 32791623
chr_2 g8749 g8749.t12 cds g8749.t12.CDS5 32791460 32791623
chr_2 g8749 g8749.t12 exon g8749.t12.exon6 32792733 32792993
chr_2 g8749 g8749.t12 cds g8749.t12.CDS6 32792733 32792734
chr_2 g8749 g8749.t12 TSS g8749.t12 32792996 32792996

Sequences

>g8749.t12 Gene=g8749 Length=1237
CATTTGACAGCATTGAAACGACGCGGCAGTTGACATTTTAGCTTTAAAAAGTGCCTATAT
TTTTCAATTTTTTCTCTTTAAACTGCTTAAAAGTTGTCGAGATTACTACAAAAAGTTCAA
AAATTTTAGTGAAAATTTAAAAATTAAGAAAAAAACAAGAAAAAGTGATTAAAATAAAGT
TATTGCATGAAATTGGCTTTTTATAATTAAAATTAACTAGAAATCTCTATATTTATCTCG
ATTGCATATCATATTATGTATGCCCAATCGGTCAATACAAGCAATACAAGAAGAAGCGAC
TGAAAACAGCCCATTAAACAATCGACCTGTATCTACAATTGATAATTCAAACAAATTCAC
AATGGATGCTGAAACAAAACGAATATTGACAAAAATTGCTATTGATGTAATTCTTTTAGG
CTCTGTTGGCTTTCCTGTTCTGGCATATTTCCTCTTTGGAGTTCCTTATGAACGTGGCTT
TTTCTGTGATGATCAATCTTTGATGTATCCGTTTCATGATTCAACTGTAACAAGTGCAAT
GTTATATAGTTTTGGTTTTGGTATACCTACAATTTGCATTCTCATAATTGAATACTTAAG
ATGGAGGCTTAATATGGAACCTGAAAGAGAACTGAAACTTTTTGGTCGTTCAATCCCCGT
TTGGGTTATAAATGCATACAGATTTATAGGCATTCTTCTCTTTGGAGCTGCTTGCAGTCA
ATTGATAACTGATATTGCAAAATATACAATTGGTCGATTACGTCCTCATTTCTTAAGTGT
TTGCCAACCGATTATGCCTGATGGAACTAATTGCTCGGATATAATAAATCACAACAAATA
CATCATTGATTTCACATGCAGTAATGAAAATGCTTCAAAAAGGAAGTTAAAAGAAATGAG
ATTGAGTTTTCTAAGTGGACATAGTTCATTTAGTATGTACACGATGGTCTATGCTGCTCT
TTATATTCATAGCCGCATGGAATGGAAAGGATCAAAGTTATTTAAACATTTTCTTCAATT
TATATTTATTGCATTGGCATGGTATACAGCATTATCAAGAGTCAGCAATTATAAGCATCA
CTGGTCCGATGTGATGGCGGGTTCCATTCAAGGTCTATTTGTTTCATTGTTAATCGTCTT
CGGTGTTTCTGGTCTATTCAAAAATAAATTCAAAATTGTTGAACAACCAAAAGGATCACG
TTATGAGTTAAACTCGCATAGTACCAGAAGCAATTAG

>g8749.t12 Gene=g8749 Length=325
MPNRSIQAIQEEATENSPLNNRPVSTIDNSNKFTMDAETKRILTKIAIDVILLGSVGFPV
LAYFLFGVPYERGFFCDDQSLMYPFHDSTVTSAMLYSFGFGIPTICILIIEYLRWRLNME
PERELKLFGRSIPVWVINAYRFIGILLFGAACSQLITDIAKYTIGRLRPHFLSVCQPIMP
DGTNCSDIINHNKYIIDFTCSNENASKRKLKEMRLSFLSGHSSFSMYTMVYAALYIHSRM
EWKGSKLFKHFLQFIFIALAWYTALSRVSNYKHHWSDVMAGSIQGLFVSLLIVFGVSGLF
KNKFKIVEQPKGSRYELNSHSTRSN

Protein features from InterProScan

Transcript Database ID Name Start End E.value
19 g8749.t12 CDD cd03384 PAP2_wunen 139 293 7.57987E-70
5 g8749.t12 Gene3D G3DSA:1.20.144.10 - 50 323 9.1E-32
26 g8749.t12 MobiDBLite mobidb-lite consensus disorder prediction 1 21 -
2 g8749.t12 PANTHER PTHR10165 LIPID PHOSPHATE PHOSPHATASE 41 302 1.0E-94
3 g8749.t12 PANTHER PTHR10165:SF173 FI04477P-RELATED 41 302 1.0E-94
1 g8749.t12 Pfam PF01569 PAP2 superfamily 145 294 9.3E-26
9 g8749.t12 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1 49 -
14 g8749.t12 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 50 70 -
12 g8749.t12 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 71 89 -
18 g8749.t12 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 90 113 -
7 g8749.t12 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 114 133 -
15 g8749.t12 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 134 156 -
11 g8749.t12 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 157 214 -
16 g8749.t12 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 215 235 -
6 g8749.t12 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 236 246 -
13 g8749.t12 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 247 266 -
10 g8749.t12 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 267 277 -
17 g8749.t12 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 278 300 -
8 g8749.t12 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 301 325 -
25 g8749.t12 SMART SM00014 acid_phosph_2 143 293 9.9E-38
4 g8749.t12 SUPERFAMILY SSF48317 Acid phosphatase/Vanadium-dependent haloperoxidase 46 293 3.66E-26
21 g8749.t12 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 46 68 -
22 g8749.t12 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 88 110 -
24 g8749.t12 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 215 237 -
23 g8749.t12 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 252 271 -
20 g8749.t12 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 278 300 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0042577 lipid phosphatase activity MF
GO:0006644 phospholipid metabolic process BP

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values