Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative phosphatidate phosphatase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g8749 g8749.t15 TTS g8749.t15 32790268 32790268
chr_2 g8749 g8749.t15 isoform g8749.t15 32790601 32792993
chr_2 g8749 g8749.t15 exon g8749.t15.exon1 32790601 32790928
chr_2 g8749 g8749.t15 cds g8749.t15.CDS1 32790603 32790928
chr_2 g8749 g8749.t15 exon g8749.t15.exon2 32791015 32791189
chr_2 g8749 g8749.t15 cds g8749.t15.CDS2 32791015 32791189
chr_2 g8749 g8749.t15 exon g8749.t15.exon3 32791246 32791397
chr_2 g8749 g8749.t15 cds g8749.t15.CDS3 32791246 32791397
chr_2 g8749 g8749.t15 exon g8749.t15.exon4 32791460 32791634
chr_2 g8749 g8749.t15 cds g8749.t15.CDS4 32791460 32791634
chr_2 g8749 g8749.t15 exon g8749.t15.exon5 32792733 32792993
chr_2 g8749 g8749.t15 cds g8749.t15.CDS5 32792733 32792738
chr_2 g8749 g8749.t15 TSS g8749.t15 32792996 32792996

Sequences

>g8749.t15 Gene=g8749 Length=1091
CATTTGACAGCATTGAAACGACGCGGCAGTTGACATTTTAGCTTTAAAAAGTGCCTATAT
TTTTCAATTTTTTCTCTTTAAACTGCTTAAAAGTTGTCGAGATTACTACAAAAAGTTCAA
AAATTTTAGTGAAAATTTAAAAATTAAGAAAAAAACAAGAAAAAGTGATTAAAATAAAGT
TATTGCATGAAATTGGCTTTTTATAATTAAAATTAACTAGAAATCTCTATATTTATCTCG
ATTGCATATCATATTATGTATATGACAAACAGGCCCAATCGGTCAATACAAGCAATACAA
GAAGAAGCGACTGAAAACAGCCCATTAAACAATCGACCTGTATCTACAATTGATAATTCA
AACAAATTCACAATGGATGCTGAAACAAAACGAATATTGACAAAAATTGCTATTGATGTA
ATTCTTTTAGGCTCTGTTGGCTTTCCTGTTCTGGCATATTTCCTCTTTGGAGTTCCTTAT
GAACGTGGCTTTTTCTGTGATGATCAATCTTTGATGTATCCGTTTCATGATTCAACTGTA
ACAAGTGCAATGTTATATAGTTTTGGTTTTGGTATACCTACAATTTGCATTCTCATAATT
GAATACTTAAGATGGAGGCTTAATATGGAACCTGAAAGAGAACTGAAACTTTTTGGTCGT
TCAATCCCCGTTTGGGTTATAAATGCATACAGATTTATAGGCATTCTTCTCTTTGGAGCT
GCTTGCAGTCAATTGATAACTGATATTGCAAAATATACAATTGGTCGATTACGTCCTCAT
TTCTTAAGTGTTTGCCAACCGATTATGCCTGATGGAACTAATTGCTCGGATATAATAAAT
CACAACAAATACATCATTGATTTCACATGCAGTAATGAAAATGCTTCAAAAAGGAAGTTA
AAAGAAATGAGATTGAGTTTTCTAAGTGGACATAGTTCATTTAGTATGTACACGATGGTC
TATGCTGCTCTTTATATTCATAGCCGCATGGAATGGAAAGGATCAAAGTTATTTAAACAT
TTTCTTCAATTTATATTTATTGCATTGGCATGGTATACAGCATTATCAAGAGTCAGCAAT
TATAAGCATCA

>g8749.t15 Gene=g8749 Length=278
MYMTNRPNRSIQAIQEEATENSPLNNRPVSTIDNSNKFTMDAETKRILTKIAIDVILLGS
VGFPVLAYFLFGVPYERGFFCDDQSLMYPFHDSTVTSAMLYSFGFGIPTICILIIEYLRW
RLNMEPERELKLFGRSIPVWVINAYRFIGILLFGAACSQLITDIAKYTIGRLRPHFLSVC
QPIMPDGTNCSDIINHNKYIIDFTCSNENASKRKLKEMRLSFLSGHSSFSMYTMVYAALY
IHSRMEWKGSKLFKHFLQFIFIALAWYTALSRVSNYKH

Protein features from InterProScan

Transcript Database ID Name Start End E.value
17 g8749.t15 CDD cd03384 PAP2_wunen 144 278 4.25008E-58
5 g8749.t15 Gene3D G3DSA:1.20.144.10 - 55 278 1.3E-21
2 g8749.t15 PANTHER PTHR10165 LIPID PHOSPHATE PHOSPHATASE 46 278 1.0E-83
3 g8749.t15 PANTHER PTHR10165:SF173 FI04477P-RELATED 46 278 1.0E-83
1 g8749.t15 Pfam PF01569 PAP2 superfamily 150 278 2.6E-17
7 g8749.t15 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1 54 -
14 g8749.t15 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 55 75 -
9 g8749.t15 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 76 94 -
13 g8749.t15 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 95 118 -
8 g8749.t15 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 119 138 -
16 g8749.t15 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 139 161 -
10 g8749.t15 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 162 219 -
15 g8749.t15 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 220 240 -
6 g8749.t15 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 241 251 -
12 g8749.t15 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 252 270 -
11 g8749.t15 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 271 278 -
22 g8749.t15 SMART SM00014 acid_phosph_2 148 278 2.7E-17
4 g8749.t15 SUPERFAMILY SSF48317 Acid phosphatase/Vanadium-dependent haloperoxidase 51 278 1.02E-17
21 g8749.t15 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 51 73 -
19 g8749.t15 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 93 115 -
20 g8749.t15 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 220 242 -
18 g8749.t15 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 257 276 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0042577 lipid phosphatase activity MF
GO:0006644 phospholipid metabolic process BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed