General information for g8749.t16
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Putative phosphatidate phosphatase.
Parent gene
- The parent gene g8749 is located on chr_2: 32791246..32792993 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g8749 | g8749.t16 | TTS | g8749.t16 | 32790268 | 32790268 |
| chr_2 | g8749 | g8749.t16 | isoform | g8749.t16 | 32791246 | 32792993 |
| chr_2 | g8749 | g8749.t16 | exon | g8749.t16.exon1 | 32791246 | 32791397 |
| chr_2 | g8749 | g8749.t16 | cds | g8749.t16.CDS1 | 32791246 | 32791397 |
| chr_2 | g8749 | g8749.t16 | exon | g8749.t16.exon2 | 32791460 | 32791634 |
| chr_2 | g8749 | g8749.t16 | cds | g8749.t16.CDS2 | 32791460 | 32791634 |
| chr_2 | g8749 | g8749.t16 | exon | g8749.t16.exon3 | 32792737 | 32792993 |
| chr_2 | g8749 | g8749.t16 | TSS | g8749.t16 | 32792996 | 32792996 |
Sequences
>g8749.t16 Gene=g8749 Length=584
CATTTGACAGCATTGAAACGACGCGGCAGTTGACATTTTAGCTTTAAAAAGTGCCTATAT
TTTTCAATTTTTTCTCTTTAAACTGCTTAAAAGTTGTCGAGATTACTACAAAAAGTTCAA
AAATTTTAGTGAAAATTTAAAAATTAAGAAAAAAACAAGAAAAAGTGATTAAAATAAAGT
TATTGCATGAAATTGGCTTTTTATAATTAAAATTAACTAGAAATCTCTATATTTATCTCG
ATTGCATATCATATTATATGACAAACAGGCCCAATCGGTCAATACAAGCAATACAAGAAG
AAGCGACTGAAAACAGCCCATTAAACAATCGACCTGTATCTACAATTGATAATTCAAACA
AATTCACAATGGATGCTGAAACAAAACGAATATTGACAAAAATTGCTATTGATGTAATTC
TTTTAGGCTCTGTTGGCTTTCCTGTTCTGGCATATTTCCTCTTTGGAGTTCCTTATGAAC
GTGGCTTTTTCTGTGATGATCAATCTTTGATGTATCCGTTTCATGATTCAACTGTAACAA
GTGCAATGTTATATAGTTTTGGTTTTGGTATACCTACAATTTGC
>g8749.t16 Gene=g8749 Length=109
MTNRPNRSIQAIQEEATENSPLNNRPVSTIDNSNKFTMDAETKRILTKIAIDVILLGSVG
FPVLAYFLFGVPYERGFFCDDQSLMYPFHDSTVTSAMLYSFGFGIPTIC
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 1 | g8749.t16 | PANTHER | PTHR10165 | LIPID PHOSPHATE PHOSPHATASE | 44 | 108 | 4.1E-15 |
| 2 | g8749.t16 | PANTHER | PTHR10165:SF173 | FI04477P-RELATED | 44 | 108 | 4.1E-15 |
| 5 | g8749.t16 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 44 | - |
| 7 | g8749.t16 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 45 | 69 | - |
| 6 | g8749.t16 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 70 | 109 | - |
| 3 | g8749.t16 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 49 | 71 | - |
| 4 | g8749.t16 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 86 | 108 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0042577 | lipid phosphatase activity | MF |
| GO:0006644 | phospholipid metabolic process | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
