Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative phosphatidate phosphatase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g8749 g8749.t6 TTS g8749.t6 32790268 32790268
chr_2 g8749 g8749.t6 isoform g8749.t6 32790384 32791935
chr_2 g8749 g8749.t6 exon g8749.t6.exon1 32790384 32790538
chr_2 g8749 g8749.t6 cds g8749.t6.CDS1 32790384 32790538
chr_2 g8749 g8749.t6 exon g8749.t6.exon2 32790599 32790928
chr_2 g8749 g8749.t6 cds g8749.t6.CDS2 32790599 32790928
chr_2 g8749 g8749.t6 exon g8749.t6.exon3 32791015 32791189
chr_2 g8749 g8749.t6 cds g8749.t6.CDS3 32791015 32791153
chr_2 g8749 g8749.t6 exon g8749.t6.exon4 32791263 32791397
chr_2 g8749 g8749.t6 exon g8749.t6.exon5 32791460 32791935
chr_2 g8749 g8749.t6 TSS g8749.t6 NA NA

Sequences

>g8749.t6 Gene=g8749 Length=1271
ATGCGACTCTTCTTTAAAAATAATCTTTTGTTTGTAAGTAATAGTAAGAAGCAATATTAA
TCTATTCGACAATTAATAGAATCATTTTTAATTCAGGAATAAAGCCAAAATTGCCTAAAA
TTCGTAAAACGTTTGTTTTCAAAATATTTTGAGTCATATAAGAAACTCGCACAAAAAACT
CTCATTAATCATCTTATTCATACTTCCTTTTCATTCAGAAGCACTTATCTTATCAATATA
TTTAAGATAAAATGAATGTTACTACGATTTTGATTTTAAAATAATTCAATTTTCTTTTTA
GATGACAAACAGGCCCAATCGGTCAATACAAGCAATACAAGAAGAAGCGACTGAAAACAG
CCCATTAAACAATCGACCTGTATCTACAATTGATAATTCAAACAAATTCACAATGGATGC
TGAAACAAAACGAATATTGACAAAAATTGCTATTGATGTAATTCTTTTAGGCTCTGTTGG
CTTTCCTGTTCTGGCATATTTCCTCTTTGGAGTTCCTTATGAACGTGGCTTTTTCTGTGA
TGATCAATCTTTGATGTATCCGTTTCATGATTCAACTGTAACAAGTGCAATGTTATATAG
TTTTGGTTTTGATTCTCATAATTGAATACTTAAGATGGAGGCTTAATATGGAACCTGAAA
GAGAACTGAAACTTTTTGGTCGTTCAATCCCCGTTTGGGTTATAAATGCATACAGATTTA
TAGGCATTCTTCTCTTTGGAGCTGCTTGCAGTCAATTGATAACTGATATTGCAAAATATA
CAATTGGTCGATTACGTCCTCATTTCTTAAGTGTTTGCCAACCGATTATGCCTGATGGAA
CTAATTGCTCGGATATAATAAATCACAACAAATACATCATTGATTTCACATGCAGTAATG
AAAATGCTTCAAAAAGGAAGTTAAAAGAAATGAGATTGAGTTTTCTAAGTGGACATAGTT
CATTTAGTATGTACACGATGGTCTATGCTGCTCTTTATATTCATAGCCGCATGGAATGGA
AAGGATCAAAGTTATTTAAACATTTTCTTCAATTTATATTTATTGCATTGGCATGGTATA
CAGCATTATCAAGAGTCAGCAATTATAAGCATCACTGGTCCGATGTGATGGCGGGTTCCA
TTCAAGGTCTATTTGTTTCATTGTTAATCGTCTTCGGTGTTTCTGGTCTATTCAAAAATA
AATTCAAAATTGTTGAACAACCAAAAGGATCACGTTATGAGTTAAACTCGCATAGTACCA
GAAGCAATTAG

>g8749.t6 Gene=g8749 Length=207
MEPERELKLFGRSIPVWVINAYRFIGILLFGAACSQLITDIAKYTIGRLRPHFLSVCQPI
MPDGTNCSDIINHNKYIIDFTCSNENASKRKLKEMRLSFLSGHSSFSMYTMVYAALYIHS
RMEWKGSKLFKHFLQFIFIALAWYTALSRVSNYKHHWSDVMAGSIQGLFVSLLIVFGVSG
LFKNKFKIVEQPKGSRYELNSHSTRSN

Protein features from InterProScan

Transcript Database ID Name Start End E.value
15 g8749.t6 CDD cd03384 PAP2_wunen 21 175 4.53709E-71
5 g8749.t6 Gene3D G3DSA:1.20.144.10 - 12 205 1.6E-32
2 g8749.t6 PANTHER PTHR10165 LIPID PHOSPHATE PHOSPHATASE 21 185 5.0E-68
3 g8749.t6 PANTHER PTHR10165:SF173 FI04477P-RELATED 21 185 5.0E-68
1 g8749.t6 Pfam PF01569 PAP2 superfamily 27 176 2.6E-26
6 g8749.t6 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1 20 -
14 g8749.t6 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 21 39 -
9 g8749.t6 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 40 96 -
12 g8749.t6 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 97 117 -
8 g8749.t6 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 118 128 -
13 g8749.t6 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 129 148 -
10 g8749.t6 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 149 159 -
11 g8749.t6 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 160 182 -
7 g8749.t6 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 183 207 -
21 g8749.t6 ProSiteProfiles PS51257 Prokaryotic membrane lipoprotein lipid attachment site profile. 1 34 5.0
20 g8749.t6 SMART SM00014 acid_phosph_2 25 175 9.9E-38
4 g8749.t6 SUPERFAMILY SSF48317 Acid phosphatase/Vanadium-dependent haloperoxidase 15 175 3.14E-24
19 g8749.t6 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 13 35 -
17 g8749.t6 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 97 119 -
16 g8749.t6 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 134 153 -
18 g8749.t6 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 160 182 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0042577 lipid phosphatase activity MF
GO:0006644 phospholipid metabolic process BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values