General information for g875.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g875 is located on chr_3: 6611865..6612401 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g875 | g875.t1 | TSS | g875.t1 | 6610956 | 6610956 |
| chr_3 | g875 | g875.t1 | isoform | g875.t1 | 6611865 | 6612401 |
| chr_3 | g875 | g875.t1 | exon | g875.t1.exon1 | 6611865 | 6612401 |
| chr_3 | g875 | g875.t1 | cds | g875.t1.CDS1 | 6611865 | 6612401 |
| chr_3 | g875 | g875.t1 | TTS | g875.t1 | 6612488 | 6612488 |
Sequences
>g875.t1 Gene=g875 Length=537
ATGCAAAATGAAAAATTAAAAGATTTCAAAGTTTTTGTTGATGCTGATAAATTTAATGCA
CATAAGTTTGTATTGGCAGCTCGCAGTCCAGTTTTTGCTGAAATGATTGAAAATAATCCT
GATGCAGAAAGTTTGAACCTTGTTGATGTTTCACCTGATATATTCCATGAAATTTACAAT
TTTATGTACACAAATGAATTTCCAAAAACAGAAAGTGTCAACTTCATTCATTTATTGATT
GCAAGTGAAAAATTGAAAATTAAAAAGTTAGCAGATTTTGCAGCAAATGAATTAACAAGT
AAAATTACTAATGAAAATGCATTTGAGCTGATGTCATTAGGAAAAAAATATAACTATGAA
AAATTAATGAAAAATTCATTTGAGAAGATTAAAAAACTCTTTGATGGTGAACAAATTGAT
GAAGGACTAGTCAATAAACCTGAAAAATTAAAGAAGCTGCTTGATTTGAAAATGGAGAAA
ATTCGTTATTTAAATGAATTAGAAGAAAAATTTAAATCTGTATTGAATGAAGAATAA
>g875.t1 Gene=g875 Length=178
MQNEKLKDFKVFVDADKFNAHKFVLAARSPVFAEMIENNPDAESLNLVDVSPDIFHEIYN
FMYTNEFPKTESVNFIHLLIASEKLKIKKLADFAANELTSKITNENAFELMSLGKKYNYE
KLMKNSFEKIKKLFDGEQIDEGLVNKPEKLKKLLDLKMEKIRYLNELEEKFKSVLNEE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g875.t1 | CDD | cd18186 | BTB_POZ_ZBTB_KLHL-like | 8 | 85 | 9.67957E-19 |
| 6 | g875.t1 | Coils | Coil | Coil | 150 | 170 | - |
| 5 | g875.t1 | Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 1 | 136 | 8.4E-28 |
| 2 | g875.t1 | PANTHER | PTHR24413:SF213 | FI01029P-RELATED | 2 | 130 | 7.8E-22 |
| 3 | g875.t1 | PANTHER | PTHR24413 | SPECKLE-TYPE POZ PROTEIN | 2 | 130 | 7.8E-22 |
| 1 | g875.t1 | Pfam | PF00651 | BTB/POZ domain | 2 | 100 | 2.5E-19 |
| 9 | g875.t1 | ProSiteProfiles | PS50097 | BTB domain profile. | 7 | 71 | 16.466 |
| 8 | g875.t1 | SMART | SM00225 | BTB_4 | 7 | 102 | 8.1E-17 |
| 4 | g875.t1 | SUPERFAMILY | SSF54695 | POZ domain | 2 | 101 | 3.14E-20 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
